BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486344

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G58850.1 | Symbols: PAR2, HLH2 | phy rapidly regulated 2 | c...   730    0.0  


> AT3G58850.1 | Symbols: PAR2, HLH2 | phy rapidly regulated 2 | 
chr3:21759352-21759942 REVERSE LENGTH=591
Length=591

 Score =  730 bits (395),  Expect = 0.0
 Identities = 487/529 (92%), Gaps = 15/529 (3%)
 Strand=Plus/Plus

Query  1    AACACATCCTCTCTCCCTCCGTCAATGGAGAAAACCCTAGCCACTTCCCATACCAAACGC  60
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AACACATCTTCTCTCCCTCCGTCAATGGAGAAAACCCTAGCCACTTCCCATACCAAACGC  60

Query  61   TC-T-T-CTCCGTCTCCATCCACCGCCGTGAACACAAGCTCCACCGGTTTCAACCGCAGA  117
            || | | |||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct  61   TCTTCTCCTCCGTCTCCATCCTCCGCCGTGAACACAAGCTCCACTGGTTTCAACCGCAGA  120

Query  118  ACCAGACAGAGACTGTCCGATACAACGGCGAGTGTAAGTGAGACTGACGTAGAAGATGAA  177
            |||||||||||| |||||||| |||||||||||||||| ||||| |||||||||||||||
Sbjct  121  ACCAGACAGAGATTGTCCGATGCAACGGCGAGTGTAAGCGAGACCGACGTAGAAGATGAA  180

Query  178  GACGATGAAGAAGAAGGAGTGGATGAGAAGATCGAGGCACTTCAGACAATAGTTCCCGGA  237
            || || || |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct  181  GATGAAGATGAAGAAGGAGTGGAGGAGAAGATCGAGGCGCTTCAGACAATAGTTCCCGGA  240

Query  238  GGAACAGCACTTGGTGTCGACGCACTGTTTGAAGAGACAGCTAGTTACATTTTGGCTCTG  297
            ||||| | ||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct  241  GGAACGGAACTTGGTGTCGACGCGCTGTTCGAAGAGACAGCTAGTTACATTTTGGCTCTG  300

Query  298  CAATGTCAGATCAATGCCATTAAAGTTCTTACTGCATTTCTTGAGCGTGGTGACAAAGAA  357
            ||||||||||||||||||||||||||||||||| | |||||||||||| |||| ||| ||
Sbjct  301  CAATGTCAGATCAATGCCATTAAAGTTCTTACTACGTTTCTTGAGCGTTGTGAGAAAAAA  360

Query  358  GATATGAAGTTTGGAGGTTGAAGATTGAACAAACAATTT-GAATTCTGAAAATCAGaaaa  416
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  
Sbjct  361  GATATGAAGTTTGGAGGTTGAAGATTGAACAAACAATTTAGAATTCTGAAAATCAGAA--  418

Query  417  aaaaagaaaaaaaaaaaCAATTTGGAATTCTCTCTGttttttcatttattttcaccttat  476
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  419  -----GAAAAAAAAAAACAATTTGGAATTCTCTCTGTTTTTTCATTTATTTTCACCTTAT  473

Query  477  attatttctttttat-tGTGGCT-T--AGTTCGGGTTTATGATTTAGTT  521
            ||| ||| ||||||| | | ||| |  |||||||||| || ||||||||
Sbjct  474  ATTTTTTTTTTTTATATATTGCTGTTTAGTTCGGGTTCATAATTTAGTT  522


 Score = 62.1 bits (33),  Expect = 6e-09
 Identities = 33/33 (100%), Gaps = 0/33 (0%)
 Strand=Plus/Plus

Query  520  TTATGTGTTTTTATTCCAAAATATTACGAGAAA  552
            |||||||||||||||||||||||||||||||||
Sbjct  541  TTATGTGTTTTTATTCCAAAATATTACGAGAAA  573



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26473395469


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5