BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486373
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59070.1 | Symbols: | Cytochrome b561/ferric reductase tran... 1751 0.0
AT5G48750.1 | Symbols: | Cytochrome b561/ferric reductase tran... 521 6e-147
AT3G59068.1 | Symbols: | Potential natural antisense gene, loc... 255 6e-67
> AT3G59070.1 | Symbols: | Cytochrome b561/ferric reductase transmembrane
with DOMON related domain | chr3:21832364-21834514
REVERSE LENGTH=1401
Length=1401
Score = 1751 bits (948), Expect = 0.0
Identities = 1123/1208 (93%), Gaps = 10/1208 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTTGTCTTCGAGAGCCACGTTAGTCGTTTTGTGTTGTCTGTTCGTGTTGATTCCA 60
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGTCCTTGTCTTCGAGAGCCACGTTAGTCGTTTTGTGTTGTCTGTTCATGTTGATTCCA 60
Query 61 TCTTTTACGACAGCAACAACAGAACAAGGACTTCA---T-G--CTAGATGTGAATCTTAC 114
||||||||||||||| ||||||||||||||||||| | | |||||||||||||||||
Sbjct 61 TCTTTTACGACAGCAGCAACAGAACAAGGACTTCATGCTAGATCTAGATGTGAATCTTAC 120
Query 115 AGCTTCAACAACGGAAAAAGCTTTCGCTCGTGCACGGATCTTCCGGTGCTAAACTCTTAT 174
||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct 121 AGCTTCAACAACGGAAAAAGCTTTCGCTCTTGCACGGATCTTTTGGTGTTAAACTCTTAT 180
Query 175 CTACACTTTAATTATGCTCAAGAAACCGGAGTTCTTGAAATTGCCTACCGTCACTCCAAT 234
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 181 CTACACTTTAATTATGCTCAAGAAACCGGAGTTCTTGAAATTGCATACCATCACTCCAAT 240
Query 235 CTTGAGTCTTCTAGTTGGATCGCGTGGGCTATAAACCCGACGAGTAAAGGCATGTTGGGA 294
|||||||||||||||||||| ||||||||||||||||||| || ||||||||| |||||
Sbjct 241 CTTGAGTCTTCTAGTTGGATATCGTGGGCTATAAACCCGACAAGCAAAGGCATGGTGGGA 300
Query 295 GCTCAAGCACTTGTGGCTTATCGAAACTCAACTTCTAGTGTTATGCGTGCTTATACTTCC 354
||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 301 GCTCAAGCACTCGTGGCTTATCGAAACTCAACTTCTGGTGTCATGCGTGCTTATACTTCC 360
Query 355 TCCATTAATAGCTACTCTCCTATGCTTCAAGAATCTCCTCTTAGCTTTCGTGTAATGCAA 414
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct 361 TCCATTAATAGCTACTCTCCTATGCTTCAAGAGTCTCCTCTTAGCCTTCGTGTAACACAA 420
Query 415 GTATCCGCCGAGTATTTTAATGGAGAGATGATGATATTTGCAACTTTAGTCTTGCCTCCT 474
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTATCCGCTGAGTATTCTAATGGAGAGATGATGATATTTGCAACTTTAGTCTTGCCTCCT 480
Query 475 AACACAACCGTCGTTAATCACTTATGGCAAGACGGTCCGTTGAAGGAAGGAGGTAGACTT 534
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 AACACAACCGTCGTTAATCACTTATGGCAAGACGGTCCGTTGAAGGAAGGAGATAGACTT 540
Query 535 GGAATGCACGCAATGAGTGGAGATCATCTCAAATTCATGGCTTCTTTGGATTTGCTTTCC 594
|||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||
Sbjct 541 GGAATGCACGCAATGAGTGGTGATAATCTCAAATCCATGGCTTCTTTGGATTTGCTTTCC 600
Query 595 GGACAAGTCACAACCACAAAATCAGTTAACAGAAACATGTTGTTGGTAAAGCGAATCCAT 654
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 601 GGACAAGTCACAACCACAAAATCAGTTAACAGAAACATGTTGTTGGTAAAACAAATCCAT 660
Query 655 GGAATAGTGAATACAGTAAGTTGGGGAATTTTCATGCCTATTGGAGTTATGGCTGCAAGA 714
| |||||||||| || | || ||||| ||| ||||||| || ||||||||||||||||||
Sbjct 661 GCAATAGTGAATGCATTGAGCTGGGGGATTCTCATGCCCATCGGAGTTATGGCTGCAAGA 720
Query 715 TATATGAAAAACTACGAGGTATTAGACCCCACATGGTTCTATGTACACGTAGTGTGTCAA 774
|||||||| || |||||||||||||| ||||||||||||||| ||||||| || ||||||
Sbjct 721 TATATGAAGAATTACGAGGTATTAGATCCCACATGGTTCTATATACACGTTGTTTGTCAA 780
Query 775 ACCATGGGTTATTTCGTC-GGTTTGATCGGAGGATTAGGAACAACAATCTACATGGCGAG 833
|||| ||||||||| || |||||||||||||||||||||||| ||||||||||||||||
Sbjct 781 ACCACGGGTTATTTT-TCCGGTTTGATCGGAGGATTAGGAACAGCAATCTACATGGCGAG 839
Query 834 ACATACCGGGATGAGGACTACATTGCATACCGTGATAGGATTGCTTCTATTTGCTTTAGG 893
|||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||
Sbjct 840 ACATACCGGGATGAGGACTACACTGCATACCGTGATAGGATTACTTCTGTTTGCTTTAGG 899
Query 894 GTTTTTGCAGATACTTGCGCTCAAAGCAAGACCGGACAAGGATCATAAATACAGAAAATA 953
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 900 GTTTTTGCAGATACTTTCGCTCAAAGCAAGACCGAACAAGGATCATAAATACAGAAAATA 959
Query 954 TTGGAACTGGTATCATCACACGGTAGGATACATAGTGATTGTACTAAGCATCTACAATAT 1013
||||||||||||||||| || | |||||||||||||||||||||||||| ||||||||
Sbjct 960 CTGGAACTGGTATCATCATACTATGGGATACATAGTGATTGTACTAAGCATATACAATAT 1019
Query 1014 CTACAAAGGCTTGTCAATTTTACAACCCGGAAGCGGCTGGAAGATTGCCTACACTACCAT 1073
||||||||||||||| |||||||||||||||||| |||||| || ||||| ||||||||
Sbjct 1020 CTACAAAGGCTTGTCTATTTTACAACCCGGAAGCATCTGGAAAATCGCCTATACTACCAT 1079
Query 1074 AATCTGTTGCATTGCAGCGTTTGCCATTGTGATGGAAATTTTACAGTTTAAGAAGAGATG 1133
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1080 AATCTGTTGCATTGCAGCGTTTGCGGTTGTGATGGAAATTTTACAGTTTAAGAAGAGATG 1139
Query 1134 GGCTGGATTGTT-TTGCAAGAAAACCAAAAACCTAGAAGCTGATCATCAAACTGCCTCCG 1192
|||| ||||||| || ||||||| ||||| || ||||||||||||| | |||| ||||
Sbjct 1140 GGCTAGATTGTTCTT-CAAGAAATCCAAAGACGTAGAAGCTGATCAACCCACTGTTTCCG 1198
Query 1193 TTGATGTG 1200
||||||||
Sbjct 1199 TTGATGTG 1206
Score = 257 bits (139), Expect = 2e-67
Identities = 159/168 (95%), Gaps = 3/168 (2%)
Strand=Plus/Plus
Query 1251 TGATCGGAGAGACGGAAAAGGCGGAAG-GGAAAAA-GCGAGCGGCGGATTTGAAATTCAG 1308
|||||||||||||||||||||||| || ||||||| |||||||||||| |||||||||||
Sbjct 1205 TGATCGGAGAGACGGAAAAGGCGG-AGAGGAAAAAGGCGAGCGGCGGAATTGAAATTCAG 1263
Query 1309 ATTGAAAACTATAATTTAACGAAGAACTTCATGATCCCCTCAGTTTTTGTTGTTTCTTAT 1368
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1264 ATTGAAAACTATAATATAACGAAGAACTTCATGATCCCCTCAGTTTTTGTTATTTCTTAT 1323
Query 1369 CCACATACTTCTTCGCCGCTTCTAGCCTTTCATCCCTACCACCCTCCG 1416
|||||||||||| |||||||||||||||||||| ||||||||| ||||
Sbjct 1324 CCACATACTTCTCCGCCGCTTCTAGCCTTTCATTCCTACCACCATCCG 1371
> AT5G48750.1 | Symbols: | Cytochrome b561/ferric reductase transmembrane
with DOMON related domain | chr5:19770052-19770819
REVERSE LENGTH=768
Length=768
Score = 521 bits (282), Expect = 6e-147
Identities = 614/771 (80%), Gaps = 35/771 (5%)
Strand=Plus/Plus
Query 1 ATGTCTT-TGTCTTCGAGAGCCACGTTAGTCGTTTTGTGTTGTCTGTTCGTGTTGATTCC 59
|||| || ||||||||||| | | || || | |||||||| ||||||||| ||| |||
Sbjct 1 ATGT-TTCTGTCTTCGAGAACTATTTTTGTGGGTTTGTGTTTTCTGTTCGTTTTGGCTCC 59
Query 60 AT-CTTTTACGACAGCAACAA-CAGAACAAGGACTTCATGCTAGATGTGAATCTTACAGC 117
|| | ||||| | |||||||| || | || | |||| | ||| || || ||| ||| |
Sbjct 60 ATGC-TTTACTAGAGCAACAACCA-ATGAA-G--TTCAAGTTAGCTGCGACTCTCACAAC 114
Query 118 TTCAACAACGG-AAAAAGCTTTCGCTCGTGCACGGATCTTCCGGTGCTAAACTC-TTATC 175
|||||||| || ||| | ||| || || || || ||||| ||| || | || || ||
Sbjct 115 TTCAACAATGGCAAACA-CTTCCGTTCATGTGTTGACCTTCCTGTGTTAGATTCGTT-TC 172
Query 176 TACACTTTAATTATGCTCAAGAAACCGGAGTTCTTGAAATTGCCTACCGTCACT-CCAAT 234
|||||| | ||| | || |||||||||||| |||||| |||| || ||||| | ||||
Sbjct 173 TACACTACAGTTACGTTCGAGAAACCGGAGTGCTTGAAGTTGCATATCGTCA-TACCAA- 230
Query 235 C-TTGAGTCTTCTAGTTGGATCGCGT-GGGCTATAAACCCGACGAGTAAAGGCATGTTGG 292
| | ||||||||||||||||| || | |||| |||||||||||||| ||||||||| | |
Sbjct 231 CATCGAGTCTTCTAGTTGGATTGCTTGGGGC-ATAAACCCGACGAGCAAAGGCATGATAG 289
Query 293 GAGCTCAAGCACTTGTGGCTTATCGAAACTCAACTTCTAGTGTTATGCGTGCTTATACTT 352
| |||||| ||||| ||||||| || ||||| || || || |||||||||| |||||||
Sbjct 290 GTGCTCAAACACTTTTGGCTTACCGTAACTCCACGTCCGGTTTTATGCGTGCATATACTT 349
Query 353 CCTCCATTAATAGCTACTCTCCTATGCTTCAAGAA-TCTCCTCTTAGCTTTCGTGTAATG 411
|||| || ||| ||||| | ||||||||||||||| | ||||| ||||||||||||| |
Sbjct 350 CCTCAATAAATGGCTACACACCTATGCTTCAAGAAGGC-CCTCTGAGCTTTCGTGTAACG 408
Query 412 CAAGTATCCGCCGAGTATTTTAATGGAGAGATGA-TGATATTTGCAACTTTAGTCTTGCC 470
||| ||||||| || ||| | ||| ||||||||| | |||||||| ||| | || | |||
Sbjct 409 CAACTATCCGCTGAATATCTCAATAGAGAGATGACT-ATATTTGCCACTATGGTGTGGCC 467
Query 471 -TCCTAACACAACCGTCGTTAATCACTTATGGCAAGACGGTCCGTTGAAGGAAGGAGGTA 529
| ||||||||||||| || ||||| ||||||||||||||||||||||||||||| | ||
Sbjct 468 GT-CTAACACAACCGTTGTCAATCATTTATGGCAAGACGGTCCGTTGAAGGAAGGTGATA 526
Query 530 GACTTGGAATGCACGCAATGAGTGGAGATCATCTCAAATTCATGGCTTCTTTGGATTTGC 589
| ||||| |||||||| ||||||||| |||||||||||| ||||||| ||||||||||
Sbjct 527 GGCTTGGGATGCACGCCATGAGTGGAAATCATCTCAAATCCATGGCTAATTTGGATTTG- 585
Query 590 TT-TCCGGACAAGTCACAACCACAAAATCAGTTAACAGA-AACATGTTGTTGGT-AAA-G 645
|| ||||||||||||| ||||| ||| ||| ||| || |||||||| | || ||| |
Sbjct 586 TTGTCCGGACAAGTCATGACCACTAAAGCAGCTAAT-GATAACATGTTACTAGTCAAAAG 644
Query 646 CGAATCCATGGAATAGTGAATACAGTAAGTTGGGGAATTTTCATGCCTATTGGAGTTATG 705
| | || ||||| |||||||| |||| ||||||| |||||||| || ||||| || |||
Sbjct 645 C-ATTC-ATGGACTAGTGAATGCAGTGTGTTGGGGGATTTTCATACCCATTGGTGTCATG 702
Query 706 GCTGCAAGATATATGAAAAACTACGA-GGTATTAGACCCCACATGGTTCTA 755
|||||||| || |||| | |||| | || | | |||||||| ||||||||
Sbjct 703 GCTGCAAGGTACATGAGGACCTACAAAGG-ACTGGACCCCACTTGGTTCTA 752
> AT3G59068.1 | Symbols: | Potential natural antisense gene, locus
overlaps with AT3G59070 | chr3:21832343-21832701 FORWARD
LENGTH=359
Length=359
Score = 255 bits (138), Expect = 6e-67
Identities = 158/167 (95%), Gaps = 3/167 (2%)
Strand=Plus/Minus
Query 1252 GATCGGAGAGACGGAAAAGGCGGAAG-GGAAAAA-GCGAGCGGCGGATTTGAAATTCAGA 1309
||||||||||||||||||||||| || ||||||| |||||||||||| ||||||||||||
Sbjct 217 GATCGGAGAGACGGAAAAGGCGG-AGAGGAAAAAGGCGAGCGGCGGAATTGAAATTCAGA 159
Query 1310 TTGAAAACTATAATTTAACGAAGAACTTCATGATCCCCTCAGTTTTTGTTGTTTCTTATC 1369
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 158 TTGAAAACTATAATATAACGAAGAACTTCATGATCCCCTCAGTTTTTGTTATTTCTTATC 99
Query 1370 CACATACTTCTTCGCCGCTTCTAGCCTTTCATCCCTACCACCCTCCG 1416
||||||||||| |||||||||||||||||||| ||||||||| ||||
Sbjct 98 CACATACTTCTCCGCCGCTTCTAGCCTTTCATTCCTACCACCATCCG 52
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70983570630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5