BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486375
Length=1978
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59080.1 | Symbols: | Eukaryotic aspartyl protease family p... 2789 0.0
AT2G42980.1 | Symbols: | Eukaryotic aspartyl protease family p... 992 0.0
> AT3G59080.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr3:21836579-21838620 FORWARD LENGTH=2042
Length=2042
Score = 2789 bits (1510), Expect = 0.0
Identities = 1763/1880 (94%), Gaps = 38/1880 (2%)
Strand=Plus/Plus
Query 117 ACTTTT-TATTCCCGGCGACTCGAAGCTTAATCGTCGCCGGCGATTTTTTGTTCTCAAGC 175
|||||| | ||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 165 ACTTTTCT-TTCCCGGCGACTCAAAGCTTAATTGTCGCCGGCGATTTTTTGTTCTCAAGC 223
Query 176 ATTTATTATCCTAATGTTTTCCAAGTACAGTTTCATTCTTTGTCTTATTTTCTTCTTCGT 235
| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 A--T-TGATCCTAATGTTTTCCAAGTACAGTTTCATTCTTTGTCTTATTTTCTTCTTCGT 280
Query 236 CACAGCATTTTCCGGCGACTCCAGAGCTCTTGCTGGAAACAATGAGCAGAAGAAGAACAT 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 281 CACAGCATTTTCCGGCGACTCCAGAGCTCTTGCTGGAAACAATGAGCAGAAGAA---CAT 337
Query 296 CTCTGGCTTTTCTGGGATTGACTTTCCTAATCCGATGCGTTTCGGTTCTGTTTCTTCTTC 355
||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||
Sbjct 338 CTCTGGCTTTTCTGGGATTGACTTTCCAAATCCAATGCGTTTCGGTTCTGCTTCTTCTTC 397
Query 356 CTCAAGCAACGATTGCGGCTTCTCTTCCTCTGAGAACGAACCAACCAAGGAACGGACCGG 415
| |||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||
Sbjct 398 CACAAGCAACGATTGCGGCTTCTCTTCCCCTGAGAAAGAACCCACCAAGGAACGGACCGG 457
Query 416 AGAAAACAAGACGGTGAAGTTTCACTTAAAGCGCCGAGAGTCTACGACTACAGAGAAGAC 475
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
Sbjct 458 AGAAAACAAGACGGTGAAGTTTCACTTAAAGCGCCGGGAGACTACGACTACAGAGAAGGC 517
Query 476 AACAACAAATTCAGTTCTTGAGCTTCAAATCCGAGATCTCACAAGAATTCAGACGCTTCA 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 AACAACAAATTCAGTTCTTGAGCTTCAAATCCGAGATCTCACAAGAATTCAGACGCTTCA 577
Query 536 CAAAAGGGTTTTGGagaagaagaaccaaaacactgtttcgcagaagcagaagaagaa-ga 594
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 578 CAAAAGAGTTTTGGAGAAGAACAACCAAAACACTGTTTCGCAGAAGCAGAAGAAGAATGA 637
Query 595 ataaagaagTCGTTACCACT-C-C-GGTGGCTTCTTCCGTGGAGGAGCAGGCTGGTCAAT 651
||||||||| ||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 638 -TAAAGAAGTTGTTACCACTACTCCGGTGGCTTCTTCCGTGGAGGAGCAGGCTGGTCAAT 696
Query 652 TGGTGGCAACGCTTGAGTCTGGTATGACTCTTGGTTCTGGCGAGTACTTCATGGACGTGT 711
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 697 TGGTGGCAACACTTGAGTCTGGTATGACTCTCGGTTCTGGCGAGTACTTCATGGACGTGT 756
Query 712 TGGTTGGTTCGCCACCAAAACACTTCTCCTTGATTCTTGATACAGGGAGTGACCTAAACT 771
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 757 TGGTTGGTTCGCCACCAAAACACTTCTCCTTGATTCTTGATACAGGGAGTGACTTAAACT 816
Query 772 GGATTCAATGCTTGCCTTGCCACGACTGTTTCCAGCAAAACGGTGCGTTTTATGACCCTA 831
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 817 GGATTCAATGCTTGCCTTGCTACGACTGTTTCCAGCAAAACGGTGCGTTTTATGACCCTA 876
Query 832 CAGCCTCTGCTTCTTACAAGAACATAACTTGCAATGACCCAAGATGCAATCTAGTCTCAC 891
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 877 AAGCCTCTGCTTCTTACAAGAACATAACTTGCAATGACCAAAGATGCAACCTAGTCTCAT 936
Query 892 CACCTGACCCTCCAAAGCCCTGCAAATCAGATAACCAATCATGCCCTTACTACTACTGGT 951
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 CACCTGACCCTCCAATGCCCTGCAAATCAGATAACCAATCATGCCCTTACTACTACTGGT 996
Query 952 ATGGGGATAGCTCCAACACTACCGGAGATTTTGCAGTCGAGACTTTCACGGTTAATCTCA 1011
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 997 ATGGGGATAGCTCCAACACTACCGGAGATTTTGCAGTAGAGACTTTCACGGTTAACCTCA 1056
Query 1012 CTACAAGTGGAGGGAGCTCGGAGTTGTATAATGTCGAAAACATGATGTTCGGTTGTGGTC 1071
| |||| ||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 1057 CGACAAATGGAGGGAGCTCGGAGTTGTATAATGTTGAAAATATGATGTTCGGTTGCGGTC 1116
Query 1072 ATTGGAACAGAGGTCTCTTCCATGGTGCTGCAGGCTTGCTTGGGTTAGGAAGAGGCCCGC 1131
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1117 ATTGGAACCGAGGTCTCTTCCATGGTGCTGCAGGCTTGCTTGGTTTAGGAAGAGGCCCGC 1176
Query 1132 TTTCGTTTTCCTCTCAGCTTCAGTCTCTTTATGGTCATTCCTTCTCATATTGCCTTGTTG 1191
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1177 TTTCGTTTTCCTCTCAGCTTCAGTCTCTTTATGGTCATTCCTTCTCTTATTGCCTTGTCG 1236
Query 1192 ATAGAAATAGCGATACCAATGTTAGTAGCAAATTGATTTTTGGGGAAGACAAGGATTTGT 1251
| ||||| ||||||||||| |||||||||||| ||||||| || ||||||||||||||||
Sbjct 1237 ACAGAAACAGCGATACCAACGTTAGTAGCAAACTGATTTTCGGAGAAGACAAGGATTTGT 1296
Query 1252 TGAGCCATCCGAATCTGAACTTCACTTCTTTTGTCGCTGGGAAAGAGAACCTCGTCGACA 1311
| || || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1297 TAAGTCACCCGAATCTGAACTTCACTTCTTTTGTCGCTGGGAAAGAAAACCTCGTCGACA 1356
Query 1312 CATTTTACTACGTACAGATCAAATCCATTATAGTCGCGGGAGAAGTACTAAAGATACCTG 1371
|||||||||||||||| |||||||||||| |||||||||||||||| ||||| |||||||
Sbjct 1357 CATTTTACTACGTACAAATCAAATCCATTCTAGTCGCGGGAGAAGTTCTAAACATACCTG 1416
Query 1372 AAGAAACATGGAATATCTCATCAAATGGAGCTGGAGGTACAATCATCGATTCGGGTACAA 1431
||||||||||||||||||||||| ||||||||||||| || ||||| ||||| |||||||
Sbjct 1417 AAGAAACATGGAATATCTCATCAGATGGAGCTGGAGGGACGATCATTGATTCAGGTACAA 1476
Query 1432 CCTTAAGTTATTTCGCGGAACCTGCATATGAATTCATCAAGAACAAGATAGCAGAGAAAG 1491
|||||||||| ||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 1477 CCTTAAGTTACTTCGCAGAACCTGCATATGAATTCATCAAGAACAAGATTGCTGAGAAAG 1536
Query 1492 CGAAAGGGAAGTACCCGGTTTATAGAGATTTCCCAATCCTAGATCCTTGTTTCAACGTCT 1551
| ||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1537 CTAAAGGGAAGTATCCGGTCTATAGAGATTTTCCAATCCTAGATCCTTGCTTCAACGTCT 1596
Query 1552 CTGGCAT-CGATAACATTCAGCTGCCAGAGCTTGGGATTGCTTTTGCAGATGGCGCGGTT 1610
||||||| | ||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1597 CTGGCATTC-ATAACGTTCAGCTGCCAGAGCTTGGGATTGCTTTTGCAGATGGCGCTGTT 1655
Query 1611 TGGAACTTCCCAACAGAGAATTCTTTCATATGGTTGAATGAGGATTTGGTTTGCTTGGCA 1670
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1656 TGGAACTTCCCGACAGAGAATTCTTTCATATGGTTGAATGAGGATTTGGTTTGCTTGGCA 1715
Query 1671 ATTCTTGGAACTCCCAAATCAGCCTTTTCAATCATTGGAAACTACCAGCAGCAGAATTTT 1730
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1716 ATGCTAGGAACTCCCAAATCAGCATTTTCAATCATTGGAAACTACCAGCAGCAGAATTTT 1775
Query 1731 CATATACTATATGATACAAAGAGGTCCAGGCTCGGGTATGCACCTACAAAGTGTGCTGAT 1790
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1776 CATATACTCTATGATACAAAGAGGTCTAGGCTCGGGTATGCACCTACAAAGTGTGCAGAT 1835
Query 1791 ATATAACCTTTCTTGTCAATTATACAGATTTTAAGTCCATCAAAGCAACTGTACACACAA 1850
|||||| |||||||||| ||| | || ||||||||||||||||||| ||||||||
Sbjct 1836 ATATAATCTTTCTTGTCGATT-T-----TT--AAGTCCATCAAAGCAACTGAACACACAA 1887
Query 1851 TAAGAACAGATTCAtttttttttCCCTTTAGATTTTTTCATTCTTTAGGATATTCCTTTA 1910
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1888 TAAGAACAGATTCATTTTTTT--CCCTTTAGATTTTTTCATTCTTTAGGATATTCCTTCA 1945
Query 1911 AACATGTA-T-T----G----A-A-CTAAGATCATACCAAACTAATGTACTTATTCAAAC 1958
|||||||| | | | | | | ||||||||||||||||||||||||||||||||
Sbjct 1946 AACATGTAATGTATTTGCTGTAGAACAAAGATCATACCAAACTAATGTACTTATTCAAA- 2004
Query 1959 TTCATTTCTAAATACAAAGT 1978
||||||||| ||||||||||
Sbjct 2005 TTCATTTCTGAATACAAAGT 2024
> AT2G42980.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr2:17875005-17876588 REVERSE LENGTH=1584
Length=1584
Score = 992 bits (537), Expect = 0.0
Identities = 965/1167 (83%), Gaps = 48/1167 (4%)
Strand=Plus/Plus
Query 657 GCAACGCTTGAGTCTGGTATGACTCTTGGTTCTGGCGAGTACTTCATGGACGTG-TTGGT 715
||||| ||||||||||||||||| || |||||||| || ||||||||||||||| || ||
Sbjct 439 GCAACACTTGAGTCTGGTATGACGCTCGGTTCTGGTGAATACTTCATGGACGTGCTT-GT 497
Query 716 TGGTTCGCCACCAAAACACTTCTCCTTGATTCTTGATACAGGGAGTGACCTAAACTGGAT 775
|| | ||||||||||||||||| ||||||||||| |||||||||||| |||||||| |
Sbjct 498 GGGCACACCACCAAAACACTTCTCATTGATTCTTGACACAGGGAGTGACTTAAACTGGCT 557
Query 776 TCAATG-CTTGCCTTGCCACGACTGTTTCCAGCAAAACGGTGCGTTTTATGACCCTACAG 834
||||| ||| |||||| ||||||||||||| ||||||||| ||||||||| || | |
Sbjct 558 CCAATGCCTT-CCTTGCTACGACTGTTTCCATCAAAACGGTATGTTTTATGATCCAAAAA 616
Query 835 CCTCTGCTTC-TTACAAGAACATAACTTGCAATGACCCAAGATGCAATC-TAGTCTCACC 892
| || ||||| || |||||||||||| ||||||||||| ||||||| | || ||||| |
Sbjct 617 CGTCCGCTTCATT-CAAGAACATAACATGCAATGACCCTAGATGCAGCCTTA-TCTCATC 674
Query 893 ACCTGACCCTCCA-AAGCCCTGCAAATCAGATAACCAATCATGCCCTTACTACTACTGGT 951
||| || |||||| | | ||| |||||||||||||||| |||||||| | ||||||||
Sbjct 675 ACCCGATCCTCCAGTA-CAGTGCGAATCAGATAACCAATCGTGCCCTTATTTCTACTGGT 733
Query 952 ATGGGGATAGCTCCAACACTACCGGAGATTTTGCAGTCGAGACTTTCACGGTTAATCTCA 1011
|||| || || || ||||| || |||||||| || || ||||||||||| ||||||||||
Sbjct 734 ATGGAGACAGGTCGAACACAACTGGAGATTTCGCGGTTGAGACTTTCACCGTTAATCTCA 793
Query 1012 CTA-CA---AGTGGAGGGAGCTCGGAGTTGTATAATGTCGAAAACATGATGTTCGGTTGT 1067
| | || || ||||| ||||| || ||| || || | ||| |||||||| || |||
Sbjct 794 CGACCACTGAG-GGAGGAAGCTC--AG-AGTACAAGGTGGGAAATATGATGTTTGGGTGT 849
Query 1068 GGTCATTGGAACAGAGGTCTCTTCCA-TGGTGCTGCAGGCT-TGCTTGGGTTAGGAAGAG 1125
|| ||||||||| |||||||||| || ||||||| |||| | ||||||||||||||||||
Sbjct 850 GGCCATTGGAACCGAGGTCTCTT-CAGTGGTGCTTCAGG-TCTGCTTGGGTTAGGAAGAG 907
Query 1126 GCCCGCTTTCGTTTTCCTCTCAGCTTCAGTCTCTTTATGGTCATTCCTTCTCATATTGCC 1185
| || ||||||||||| ||||||||||||||||| ||||| |||||||| || || || |
Sbjct 908 GACCTCTTTCGTTTTCTTCTCAGCTTCAGTCTCTCTATGGCCATTCCTTTTCCTACTGTC 967
Query 1186 TTGTTGATAGAAATAGCGATACCAATGTTAGTAGCAAATTGATTTTTGGGGAAGACAAGG 1245
|||| |||||||| ||| | |||||||| || ||||| ||||| ||||| |||||||| |
Sbjct 968 TTGTCGATAGAAACAGCAACACCAATGTAAGCAGCAAGTTGATATTTGGAGAAGACAAAG 1027
Query 1246 ATTTGTTGAGCCATC-CGAATCTGAACTTCACTTCTTTTGTCG--CTGGGAAAGAGAACC 1302
||||| ||| ||| | | ||||||||||||||||||||||| | | ||||| |||||
Sbjct 1028 ATTTGCTGAACCA-CACAAATCTGAACTTCACTTCTTTTGT-GAAC-GGGAAGGAGAA-T 1083
Query 1303 TC-GTCGACACATTTTACTACGTACAGATCAAATCCATTATAGTC-GCGGGAGAAG-TAC 1359
|| || || ||||||||||| ||||||||||||||||| ||||| |||| | ||| | |
Sbjct 1084 TCAGTGGAGACATTTTACTATATACAGATCAAATCCATTCTAGTCGGCGGCA-AAGCT-C 1141
Query 1360 TAAAGATACCTGAAGAAACATGGAATATCTCATCAAATGGAGCTGGAGGTACAATCATCG 1419
|| | |||||||||||||||||||||||||||||| |||| | ||| || || ||||| |
Sbjct 1142 TAGACATACCTGAAGAAACATGGAATATCTCATCAGATGGTGATGGTGGAACCATCATTG 1201
Query 1420 ATTCGGGTACAACCTTAAGTTATTTCGCGGAACCTGCATATGA-ATTCATCAAGAACAAG 1478
|||| |||||||||||||| |||||||| |||||||||||||| || |||||| ||||||
Sbjct 1202 ATTCTGGTACAACCTTAAGCTATTTCGCAGAACCTGCATATGAGAT-CATCAAAAACAAG 1260
Query 1479 ATAGCAGAGAAAGCGAAAGGGAAGTACCCGGT-TTATAGAGATTTCCCAATCCTAGATCC 1537
| ||||||||| ||||| || ||||| | || |||||||||||| |||| |||||
Sbjct 1261 TTTGCAGAGAAAATGAAAGAAAACTACCCAATATT-TAGAGATTTCCCGGTCCTTGATCC 1319
Query 1538 TTGTTTCAACGTCTCTGGCATCGAT-A-A-CAT--TC-AGCTGCCAGAGCTTGGGATTGC 1591
||| ||||| || |||||||| || | | || || | || || ||||| ||||||||
Sbjct 1320 TTGCTTCAATGTATCTGGCATAGAGGAGAACAACATCCACCTACCTGAGCTCGGGATTGC 1379
Query 1592 TTTTGCAGATGGCGCGGTTTGGAACTTCCCAACAGAGAATTCTTTCATATGGTTGAATGA 1651
|||| ||| ||| | |||||||| ||||| | ||||| || ||||| ||||||| ||
Sbjct 1380 ATTTGTAGACGGCACAGTTTGGAATTTCCCTGCTGAGAACTCCTTCATTTGGTTGAGCGA 1439
Query 1652 GGATTTGGTTTGCTTGGCAATTCTTGGAACTCCCAAATC-AGCCTTTTCAATCATTGGAA 1710
|||||||||||||||||||||||| |||||||| ||||| | |||| || ||||| ||||
Sbjct 1440 GGATTTGGTTTGCTTGGCAATTCTAGGAACTCCAAAATCTA-CCTTCTCGATCATCGGAA 1498
Query 1711 ACTACCAGCAGCAGAATTTTCATATACTATATGATACAAAGAGGTCCAGGCTCGGGTATG 1770
|||||||||| |||||||| |||||||| ||||||||||||||||| ||||| |||| |
Sbjct 1499 ACTACCAGCAACAGAATTTCCATATACTCTATGATACAAAGAGGTCTAGGCTAGGGT-TC 1557
Query 1771 -CACCTACAAAGTGTGCTGATATATAA 1796
|||| ||||||||||| || ||||||
Sbjct 1558 ACACCCACAAAGTGTGCGGACATATAA 1584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97991463840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5