BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486377
Length=1585
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59090.2 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein o... 1868 0.0
> AT3G59090.2 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein
of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis
thaliana protein match is: tobamovirus multiplication
1 (TAIR:AT4G21790.1); Has 198 Blast hits to 197 proteins in
29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
2; Plants - 190; Viruses - 0; Other Eukaryotes - 6 (source:
NCBI BLink). | chr3:21839197-21842727 FORWARD LENGTH=1537
Length=1537
Score = 1868 bits (1011), Expect = 0.0
Identities = 1155/1220 (95%), Gaps = 28/1220 (2%)
Strand=Plus/Plus
Query 1 GTCTCTCAGACCAGACCCAACCCATCTCCTACAACCATCTGTCTCGGTGGTGTTCTTTGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCTCTCAGACCAGACCCAACCCATCTCCTACAACCATCTGTCTCGGTGGTGTTCTTTGA 60
Query 61 T-C-CTCTCTCTTACAAACCTAAAATCTCGGCATTCGATCTC-T---G-GG---GA-AAG 109
| | |||||||||||||||||||||||| ||||||||||||| | | || || |||
Sbjct 61 TCCTCTCTCTCTTACAAACCTAAAATCTAGGCATTCGATCTCTTGGGGAGGATCGAGAAG 120
Query 110 ---AGA--GGATTCACGATGACGATCTTATTAGCGACGCTTTTCGAATCAACCAAGGATA 164
||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||
Sbjct 121 AAAAGAGCGGATTCACGATGAAGATC---TTAGCGACTCTTTTCGAATCAACCAAGGATA 177
Query 165 AATGCTATGCCCCAAGCTTCATCGCCGTCAATCTCTCTCTGGCTTTTATCGATGCCGCTC 224
|||||||||| || |||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 178 AATGCTATGCTCCTAGCTTCATCGCCGTCAATCTCTGTTTGGCTTTTATCGATGCCGCTC 237
Query 225 TTGCTTTCATCGCATTCCTTCAGTTATCTCGATTTCACAGGCGGAATAAACAAGTTGGAT 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTGCTTTCATCGCATTCCTTCAGTTATCTCGATTTCACAGGCGGAATAAACAAGTTGGAT 297
Query 285 GGACTCGGCAAAAAGTACTTCATCTTATGATTGGTTCTTCAAACACTGGTTCTGTCGTTT 344
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 298 GGACTCGGCAAAAAGTACTTCATCTTATGATTGCTTCTTCAAACACTGGTTCTGTTATTT 357
Query 345 ATTTTGTTGCTGCGATTATAGCGACTTGCACAAGGTGGCATCATTGGTCCAACGCATTAG 404
|||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATTTCGTGGCTGCGGTTATAGCGACTTGCACAAGGTGGCATCATTGGTCCAACGCATTAG 417
Query 405 GTTTTCTACTCATGGCCTTTCCCAAAATTCTGTTTCTGGCAACTTTTCTCCTGCTTCTCT 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GTTTTCTACTCATGGCCTTTCCCAAAATTCTGTTTCTGGCAACTTTTCTCCTGCTTCTCT 477
Query 465 CTTTCTGGGTAGATGTTTGCCATCAGGGAAATGGAGAGGAGgatgatgatgatgatgaAG 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CTTTCTGGGTAGATGTTTGCCATCAGGGAAATGGAGAGGAGGATGATGATGATGATGAAG 537
Query 525 AAAATAGCATCCAACAAGTTTTGCTTGAAAAAAGCAACACCAAGCCAGGTTCTTCAAATG 584
||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| ||||
Sbjct 538 AAAATAGCATCCAACAAGTGTTGCTTGAAAAAAGCAAGAGCAAGCCAGGTTCTTCGAATG 597
Query 585 CTAGTGATCGTAGAAAGTGTTGCTCTTTCCATGGGATTCATGTTGGAACCCGTCAGAAGT 644
| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 598 CAAGTGATCGTAGAAAGTGTTGCTCTTTCCATGGTATTCATGTTGGAACCCGGCAGAAGT 657
Query 645 TTGTTGTTGCGGTAATTATTCTTGTGTTCATCTTAATGATATCATTTGCAATCCTTATCT 704
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTGTTGTTGCGGCAATTATTCTTGTGTTCATCTTAATGATATCATTTGCAATCCTTATCT 717
Query 705 GGATCGCTTCCGGAAAGAATCCTATGAATTCTTCATTATTGGCTGAGGTGTATGTCGATA 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GGATCGCTTCCGGAAAGAATCCTATGAATTCTTCATTATTGGCTGAGGTGTATGTCGATA 777
Query 765 TTTTTGCTGCAATAATCCTAATCACGGGAGGAGGAATATGCTTCTATGGCCTGCGTCTGC 824
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 778 TTTTTGCTGCAATAATCCTAATCACTGGAGGAGGAATCTGCTTCTATGGCCTGCGTCTGC 837
Query 825 TCTTTAATCTAAGAAAGGTGCGGTCTGAACAAGTTTCAGCAGAGATGCGTAAGGTATCTG 884
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
Sbjct 838 TCTTTAATCTAAGAAAGGTGCGGTCTGAACAAGTTTCATCAGAGATGCGAAAGGTATCGG 897
Query 885 GTTTAGCAGGCGTCTCAGTTGTTTGCTTCACTGTTAGCTCTTTAATCGCTCTTCTCACAC 944
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GTCTAGCAGGAGTCTCAGTTGTTTGCTTCACTGTTAGCTCTTTAATCGCTCTTCTCACAC 957
Query 945 ACATTCCACTCTTCTATCATTGGAACCCAAGCAAATTACACGGCGTCAAAGCATTGGTTC 1004
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 958 ACATTCCACTCTTTTATCATTGGAACCCAAGCAAATTACACGGCATCAAAGCATTGGTTC 1017
Query 1005 TTCTGATCATATACTATTTCATAGGTTCCACTGTACCATTGGCTTTCGTTTTATGGGTTT 1064
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1018 TTCTGATCATATACTATTTCATAGGTTCCACCGTCCCATTGGCTTTCGTTTTATGGGTTT 1077
Query 1065 TGCGGGAGTTACCCCCTCAAAACATTGTGAGTAGACAAGAAGACACCAGAAGGATTACTT 1124
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1078 TGCGGGAGTTACCCCCTCAAAACATTGTGAGTAGGCAAGAAGACACCAGAAGGATTACTT 1137
Query 1125 ATGTCAACTATGAAACTGTTGCAAGGCAACCTC-----C---A-CAGGACTGGGCCTCCA 1175
|||||||||||||||||||| |||||||||||| | | || ||||||||||||
Sbjct 1138 ATGTCAACTATGAAACTGTTCCAAGGCAACCTCAAGGTCCTCAACAAGACTGGGCCTCCG 1197
Query 1176 CTACAGTGTCGAAAAATCAG 1195
| ||||||||||||||||||
Sbjct 1198 CCACAGTGTCGAAAAATCAG 1217
Score = 387 bits (209), Expect = 2e-106
Identities = 283/315 (90%), Gaps = 19/315 (6%)
Strand=Plus/Plus
Query 1277 AGTTACCGGGAAAAAGCCTCGTTGGATTGCGGAATGGTTGTTAGGCCCAATGTGGTGTGT 1336
|||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||
Sbjct 1216 AGTTACCGGGAAAAAGCCTCGTGGGATTGCAGAATGGTTCTTAGGCCCAATGTGGTGTGT 1275
Query 1337 TGTGCTGGAGTGAATGAAAGTGGTAACAAGCTCTCGTTTTCTTCTCTCT-ATGTCGCCTT 1395
|||| |||||||||||||||||| |||||| ||||||||||||||||| | ||||||||
Sbjct 1276 TGTGGTGGAGTGAATGAAAGTGGAAACAAG--CTCGTTTTCTTCTCTCTGA-GTCGCCTT 1332
Query 1396 GGAAGACAAAAAATTTGTTTATAAGATAGAAAGGGAGGTTTGAATCTAAGAAAGC--TCT 1453
|||| || |||||||||||||||||||||||| |||||||||||||| ||||||| |||
Sbjct 1333 GGAATAC-AAAAATTTGTTTATAAGATAGAAATGGAGGTTTGAATCTGAGAAAGCTGTCT 1391
Query 1454 GTAAATATTAACTTTTGATTGCAGTTTTTAGTTTTAGGTGCATCATGTGTTGGA---ACT 1510
||||||||||||||||||||||| ||| |||||| || ||||||||||||| |||
Sbjct 1392 GTAAATATTAACTTTTGATTGCAATTTATAGTTT-AG---CATCATGTGTTGGGGGGACT 1447
Query 1511 TGTGGATGGGATATAAAATGTGTTGTAAGGAAGAAGATATAAATTTTGTCTTCCTTTCTA 1570
||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 1448 TGTGGATGG-ATATAAAATGTGTTCCAAGGAAGA---TATAA-TTTTGTCTTCCTTTCTA 1502
Query 1571 AACAGCGTCGTTTAA 1585
|||||||||||||||
Sbjct 1503 AACAGCGTCGTTTAA 1517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78262649655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5