BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486397
Length=2383
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59300.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3437 0.0
AT3G59310.2 | Symbols: | Eukaryotic protein of unknown functio... 630 1e-179
AT3G59320.1 | Symbols: | Eukaryotic protein of unknown functio... 115 2e-24
> AT3G59300.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:21918455-21922706 FORWARD LENGTH=2421
Length=2421
Score = 3437 bits (1861), Expect = 0.0
Identities = 2257/2437 (93%), Gaps = 71/2437 (3%)
Strand=Plus/Plus
Query 1 AAAGAAAGCTGAAAGTTTCTGAAG--TCTCTGCAAAATTTAATAGATGCGACAGTAAACA 58
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1 AAAGAAAGCTGAAAGTTTCTGAAGTCTCTCTGCAACATTTAATAGATGCGACAGTAAACA 60
Query 59 TAAGAACACCAAACAAAAACGTGATCAGCGACGGCAACGAAGACGGCG--G---AC-AC- 111
|||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 61 TAAGAACACCAAACAAAAACGTGATCAGCGACGGCAACGAAGACGGCGAAGAATACGGCG 120
Query 112 G-CA--A--ATTCCCAACGATCAGATTCTTTGACATTTCACGGCGGCTGAGCTTTCAGCT 166
| || | |||||||||||||||||||||||||||| |||||||||| || | ||||||
Sbjct 121 GACACGAGGATTCCCAACGATCAGATTCTTTGACATTCCACGGCGGCTTAGATATCAGCT 180
Query 167 TCTCCGATCCGGTCCCTCTGTTTGTGTAAATTATGGTGATCGCGGCTGCTTCTTCTTTTT 226
||||||||||| || |||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 181 TCTCCGATCCGCTCTCTCTGTTTGTGTAAATCATGGTGATCGCGGCTGCTTCCTCTTTTT 240
Query 227 CCCTCGGAGCATCTCATTGTCATCAATCTTACGCGGATGAGTTCTCTTCATCCATACCTT 286
||||||| |||||||||| |||||||||||| |||||||||||||||| ||||||||||
Sbjct 241 CCCTCGGTCCATCTCATTGCCATCAATCTTACACGGATGAGTTCTCTTCCTCCATACCTT 300
Query 287 ACAAAAGAAACGGCAACGCAAGAAATCGTGTGTTTGATGGATGTGCCTCTGCTAATCTCT 346
||||||||| | |||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 ACAAAAGAACCAGCAATGCAAGAAATCGTGTGTTTGATGGATGTGGCTCTGCTAATCTCT 360
Query 347 CTGTTTTAAGCTCCAGATGCAAGATTCCTTTTTTCGGATCAGCATTTCATGTTTCATCCG 406
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 361 CTGTTTTAAGTTCCAGATGCAAGATTCCTTTTTTTGGATCAGCATTTCATGTATCATCCG 420
Query 407 GTGGACATGACCTCGGCCTCACGAAAGTTTCGGTTGCTGCTGATTATTCGGATTCGGTTC 466
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 GTGGACATGATCTCGGCCTCACGAAAGTTTCGGTTGCTGCTGATTATTCTGATTCGGTTC 480
Query 467 CTGATTCATCTTTCTATGGATATCATCCTCTAGAAGATTTGAAGCCGTCCAAAAGAGTCC 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTGATTCATCTTTCTATGGATATCATCCTCTAGAAGATTTGAAGCCGTCCAAAAGAGTCC 540
Query 527 AAGAGACAAAACTCTCTGCTTCTGAAGTAGCAAGGACTACCGTCGAGGCGAACAGCAGTG 586
| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 541 AGGAGACAAAGCTCTCTGCTTCTGAAGTTGCAAGGACTACCGTCGAGGCGAACAGCAGTG 600
Query 587 CTGTGCTGGTGTTTCCTGGAGCTATTCACTGTGAACCACACGATCATAATTCATGGTCCG 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTGTGCTGGTGTTTCCTGGAGCTATTCACTGTGAACCACACGATCATAATTCATGGTCCG 660
Query 647 AATTTAAGTATGTCATTGATGATTATGGAGATATCTTTTTCGAAATTCCTGATGATGAGA 706
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 661 AATTTAAGTATGTCATTGATGATTATGGAGATATCTTTTTTGAAATTCCTGATGATGAGA 720
Query 707 ACATCTTAGAAGATCCTGGAGCTAGTAACCCAGTGAAAGCCTTTTTTGGAATGGATGTCC 766
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 721 ACATCTTAGAAGATCCTGGAGCTAGTAATCCAGTGAAAGCCTTTTTTGGAATGGATGTCC 780
Query 767 CGCGATACGAAAACACACGGCTCCATGAGGAATATAACGTTTCAGACATTGGTAATCTTG 826
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 781 CGCGATACGAAAACACACGGCACCATGAGGAATATAACATTTCAGACATTGGTAATCTTG 840
Query 827 ACCAAATTATTTTTGATGACCATTATTTCGAGATTATGGATTCTGAAGCTAGAGATATTC 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ACCAAATTATTTTTGATGACCATTATTTCGAGATTATGGATTCTGAAGCTAGAGATATTC 900
Query 887 CGATAGATTGGGGAATGCCTGACACCTCCAACGGGGTTCATCCTATTTACTTTGCCAAAC 946
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 901 CGATAGATTGGGGAATGCCTGACACCTCCAACGGTGTTCATCCTATTTACTTTGCCAAAC 960
Query 947 ACCTGTCGAAGGCCATCAGCATGGACTATGACAGGAAAATGGACTATCCATCTAATGGTG 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ACCTGTCGAAGGCCATCAGCATGGACTATGACAGGAAAATGGACTATCCATCTAATGGTG 1020
Query 1007 TATCCATACTCGGATGCCTTAGGCCTGCTTTCCTTGACGAGGAATCCTATATAAGAAGAT 1066
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1021 TATCCATACTTGGATGCCTTAGGCCCGCTTTCCTTGACGAGGAATCTTATATAAGAAGAT 1080
Query 1067 TATTTCTCTCGGAAGATAGAGATGACTATAGCTGGGAGGTTCAAGGTGATGATAATCCAA 1126
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TATTTCTTTCGGAAGATAGAGATGACTATAGCTGGGAGGTTCAAGGTGATGATAATCCAA 1140
Query 1127 ACACTAGTTCCAGACAG-GACGAGAACGATATGAGTTCAAGTCTATATAGACTAGAGATT 1185
|||||||||||||| | |||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1141 TCACTAGTTCCAGAC-GTGACGAGAATGATATGAGTTCAAGTCTATATAGATTAGAGATT 1199
Query 1186 GTGGGAATAGAGCTACTATCCCTCTATGGAGCAGAGTCTTCTATAAGTTTGCAAGATTTT 1245
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GTGGGAATAGAGCTTCTCTCCCTCTATGGAGCAGAGTCTTCTATAAGTTTGCAAGATTTT 1259
Query 1246 CAAGATGCCGAACCAGACATTCTAGTGCACTCTA-TGTCTGCAATCATAGAGCGCTTCAA 1304
|||||||| ||||||||||| ||||||||||||| | ||||||||||| |||||||||||
Sbjct 1260 CAAGATGCTGAACCAGACATCCTAGTGCACTCTACT-TCTGCAATCATCGAGCGCTTCAA 1318
Query 1305 TAACAGGGGGATTAACTCGAGCATTGCCCTTAAAGCTCTCTGCAAAAAGAAGGGTCTTCA 1364
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1319 CAACAGGGGGATTAACTCCAGCATTGCACTTAAAGCTCTCTGCAAAAAGAAGGGTCTTCA 1378
Query 1365 TGCAGAGGAAGCTAACCTGATCAGTGTTGATAGTCTCGGTATGGATGTGAGAGTTTTCGC 1424
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1379 TGCAGAGGAAGCTAACCTGATCAGTGTTGATAGTCTTGGTATGGATGTGAGAGTTTTCGC 1438
Query 1425 AGGTGCACAAGTCCAAACTCACCGGTTCCCTTTCAAAACCAGGGCTACAACAGAAATGGC 1484
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1439 AGGTGCACAAGTCCAAACTCACCGTTTCCCTTTCAAAACCAGGGCTACAACAGAAATGGC 1498
Query 1485 AGCAGAGAAGAAGATCCACCAGCTACTGTTCCCTCGTTCACGCAGAAGGAAACTGAAGTC 1544
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1499 AGCAGAGAAGAAGATCCACCAGCTACTGTTCCCTCGTTCACGCAGAAGGAAGTTGAAGTG 1558
Query 1545 TCATGACGAGAGTTTGAATGATGCATATCGTT--AAAAACCTGCTTACTGATCAAAATCA 1602
|||||||||||||||||| ||||||| ||||| ||||||| | || ||||||||| |||
Sbjct 1559 TCATGACGAGAGTTTGAAGGATGCATTTCGTTAAAAAAACC-G-TTGCTGATCAAAGTCA 1616
Query 1603 CGAAACCAAG-ATACAAGTAAACAGAGAAGGAGCTGTTTAGCCACT-G----G---A-T- 1651
| ||| | || | | || ||||||||||| |||||||| |||||| | | | |
Sbjct 1617 CTAAA-CTAGAAAATGAGGAAACAGAGAAGAAGCTGTTTTGCCACTGGATCTGTCTAGTA 1675
Query 1652 C---T----G-TC--TGG--T-AC--TTGTGTACATAACGATGAGCTTTCAATTCACCGT 1696
| | | || ||| | | ||||||||||||||||||||||| || | || ||
Sbjct 1676 CTTATACGAGTTCTTTGGCCTGGCGATTGTGTACATAACGATGAGCTTTAAAGTGACTGT 1735
Query 1697 ACTAG-AGT-TGTGGAGATGCAGCCTCTTACATTGTAGTAGTAAGTAGAATAATCAATAC 1754
|||| | | ||||||||| ||||||||||| || ||||||||||| | || | ||
Sbjct 1736 TCTAGAACTGTGTGGAGATTCAGCCTCTTACGTTTTAGTAGTAAGT---A-AA-C--TAA 1788
Query 1755 ATTAAACCTAAGAATAAAGAGAAGTTGATACATTTGAAGTAACTTCTCTAACAAGTCGAA 1814
|||||||| ||||||||||||||||||||||| |||||||||||||| ||| |||| ||
Sbjct 1789 ATTAAACCCAAGAATAAAGAGAAGTTGATACAATTGAAGTAACTTCTATAA-TAGTCCAA 1847
Query 1815 TGTTGTTCTTACACGGTAAATCTTCATTTGTTTTTACAATCAAGATCAAATAAAGCCCTT 1874
||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 1848 TGTTGTTCTTACAATGTAAATCTTCGTTTATCTTTACAATCAAGATCAAATAAAGCCCTT 1907
Query 1875 TTTCTCTCTCTTTACAGTTACCAATTGTTTCCTTACTTTTCTCCACTCAAAAG-----TT 1929
|||||| ||||||||||| ||||| || |||||||||||||||||||||||| ||
Sbjct 1908 TTTCTCACTCTTTACAGTCACCAACGGTGTCCTTACTTTTCTCCACTCAAAAGATCCTTT 1967
Query 1930 CTTTTTGCTGGATGCAATAATATAATATCACACAGTCAAT-GACATTGACAAAAACCTGT 1988
|||||||||||||||||||||||||||||||||||| || || |||||||||||||| |
Sbjct 1968 ATTTTTGCTGGATGCAATAATATAATATCACACAGTCGATGGA-ATTGACAAAAACCTAT 2026
Query 1989 GTGGTTAGGTTCCCGGCTCATCATCCTCATCTAACAACTTCCTCTGCACAGCCTCCTCGT 2048
||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||
Sbjct 2027 GTGGTTAGGTTCCCGGCTCATCATCCTCACCTAACAACTTCCTCTGCATAGCCGCCTCGT 2086
Query 2049 CGACCACTTCTCCAGTTCTGTGTTCCTCTTGATCTTTCTCCTTCCTGAGAAAG-ATACAA 2107
|| |||||||| || ||||||||||||||||||||||||||||||||| ||| || |||
Sbjct 2087 CGCCCACTTCTTCAAATCTGTGTTCCTCTTGATCTTTCTCCTTCCTGAG-AAGCATCCAA 2145
Query 2108 AATGGGAAAAATGGAGAAGAATAATAAAGTTCATTGATGGATTGTATATTATACTTGAAG 2167
|||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||
Sbjct 2146 CATGGGAAAAATGGAGAAGAATAAT-AAGTTCATTGATGGATTGTTTATTGTACTTGAA- 2203
Query 2168 AAA-GATTAAAAAAGACTGTACATGGAGTATATGATCAGTCCAGTAGCTGTAGTAGCAAA 2226
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2204 AAATGATTAGAAAAGACTGTACATGGAGTATATGATCAGTCCAGTAGCTGTAGTAGCAAA 2263
Query 2227 TGCCAAGAAGTAGAGCCAATCAACCTGGTATTAACATCATTAGCTGCTTTCTACAGATAG 2286
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2264 TGCCAAGAAGTAGAGCCAATCAACCTGGTATTAACATCATTAGCTGATTTCTACAGATAG 2323
Query 2287 AAAATGTAAGAGTTTCCTGATGTTTGATATACAAAGTGAGCAGACCTTCTCGTGGTAACC 2346
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2324 AAAATGTAAGGGTTTCCTGATGTTTGATATTCAAAGTGAGCAGACCTTCTCGTGGTAACC 2383
Query 2347 AAAAGTGCGGATCAAAACAGCCCACATGTCTGATGTG 2383
||||||||||||||||||||||||||| |||||||||
Sbjct 2384 AAAAGTGCGGATCAAAACAGCCCACATATCTGATGTG 2420
> AT3G59310.2 | Symbols: | Eukaryotic protein of unknown function
(DUF914) | chr3:21921746-21924412 REVERSE LENGTH=1761
Length=1761
Score = 630 bits (341), Expect = 1e-179
Identities = 563/662 (85%), Gaps = 48/662 (7%)
Strand=Plus/Minus
Query 1467 GGCTACAACAGAAATGGCAGCAGAGAAGAAGATCCACCAGCTACTGTTCCCTCGTTCACG 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 GGCTACAACAGAAATGGCAGCAGAGAAGAAGATCCACCAGCTACTGTTCCCTCGTTCACG 1682
Query 1527 CAGAAGGAAACTGAAGTCTCATGACGAGAGTTTGAATGATGCATATCGTT--AAAAACCT 1584
||||||||| |||||| |||||||||||||||||| ||||||| ||||| |||||||
Sbjct 1681 CAGAAGGAAGTTGAAGTGTCATGACGAGAGTTTGAAGGATGCATTTCGTTAAAAAAACC- 1623
Query 1585 GCTTACTGATCAAAATCACGAAACCAAG-ATACAAGTAAACAGAGAAGGAGCTGTTTAGC 1643
| || ||||||||| |||| ||| | || | | || ||||||||||| |||||||| ||
Sbjct 1622 G-TTGCTGATCAAAGTCACTAAA-CTAGAAAATGAGGAAACAGAGAAGAAGCTGTTTTGC 1565
Query 1644 CACT-G----G---A-T-C---T----G-TC--TGG--T-AC--TTGTGTACATAACGAT 1678
|||| | | | | | | | || ||| | | ||||||||||||||||
Sbjct 1564 CACTGGATCTGTCTAGTACTTATACGAGTTCTTTGGCCTGGCGATTGTGTACATAACGAT 1505
Query 1679 GAGCTTTCAATTCACCGTACTAG-AGT-TGTGGAGATGCAGCCTCTTACATTGTAGTAGT 1736
||||||| || | || || |||| | | ||||||||| ||||||||||| || |||||||
Sbjct 1504 GAGCTTTAAAGTGACTGTTCTAGAACTGTGTGGAGATTCAGCCTCTTACGTTTTAGTAGT 1445
Query 1737 AAGTAGAATAATCAATACATTAAACCTAAGAATAAAGAGAAGTTGATACATTTGAAGTAA 1796
|||| | || | || |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1444 AAGT---A-AA-C--TAAATTAAACCCAAGAATAAAGAGAAGTTGATACAATTGAAGTAA 1392
Query 1797 CTTCTCTAACAAGTCGAATGTTGTTCTTACACGGTAAATCTTCATTTGTTTTTACAATCA 1856
||||| ||| |||| ||||||||||||||| |||||||||| ||| | ||||||||||
Sbjct 1391 CTTCTATAA-TAGTCCAATGTTGTTCTTACAATGTAAATCTTCGTTTATCTTTACAATCA 1333
Query 1857 AGATCAAATAAAGCCCTTTTTCTCTCTCTTTACAGTTACCAATTGTTTCCTTACTTTTCT 1916
|||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||
Sbjct 1332 AGATCAAATAAAGCCCTTTTTCTCACTCTTTACAGTCACCAACGGTGTCCTTACTTTTCT 1273
Query 1917 CCACTCAAAAG-----TTCTTTTTGCTGGATGCAATAATATAATATCACACAGTCAATG- 1970
||||||||||| || |||||||||||||||||||||||||||||||||||| |||
Sbjct 1272 CCACTCAAAAGATCCTTTATTTTTGCTGGATGCAATAATATAATATCACACAGTCGATGG 1213
Query 1971 ACATTGACAAAAACCTGTGTGGTTAGGTTCCCGGCTCATCATCCTCATCTAACAACTTCC 2030
| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1212 A-ATTGACAAAAACCTATGTGGTTAGGTTCCCGGCTCATCATCCTCACCTAACAACTTCC 1154
Query 2031 TCTGCACAGCCTCCTCGTCGACCACTTCTCCAGTTCTGTGTTCCTCTTGATCTTTCTCCT 2090
|||||| |||| |||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1153 TCTGCATAGCCGCCTCGTCGCCCACTTCTTCAAATCTGTGTTCCTCTTGATCTTTCTCCT 1094
Query 2091 TC 2092
||
Sbjct 1093 TC 1092
Score = 121 bits (65), Expect = 4e-26
Identities = 65/65 (100%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 2188 CATGGAGTATATGATCAGTCCAGTAGCTGTAGTAGCAAATGCCAAGAAGTAGAGCCAATC 2247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 CATGGAGTATATGATCAGTCCAGTAGCTGTAGTAGCAAATGCCAAGAAGTAGAGCCAATC 1033
Query 2248 AACCT 2252
|||||
Sbjct 1032 AACCT 1028
Score = 95.3 bits (51), Expect = 2e-18
Identities = 53/54 (98%), Gaps = 0/54 (0%)
Strand=Plus/Minus
Query 2330 ACCTTCTCGTGGTAACCAAAAGTGCGGATCAAAACAGCCCACATGTCTGATGTG 2383
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1031 ACCTTCTCGTGGTAACCAAAAGTGCGGATCAAAACAGCCCACATATCTGATGTG 978
> AT3G59320.1 | Symbols: | Eukaryotic protein of unknown function
(DUF914) | chr3:21924523-21926840 REVERSE LENGTH=1202
Length=1202
Score = 115 bits (62), Expect = 2e-24
Identities = 64/65 (98%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 2188 CATGGAGTATATGATCAGTCCAGTAGCTGTAGTAGCAAATGCCAAGAAGTAGAGCCAATC 2247
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 CATTGAGTATATGATCAGTCCAGTAGCTGTAGTAGCAAATGCCAAGAAGTAGAGCCAATC 844
Query 2248 AACCT 2252
|||||
Sbjct 843 AACCT 839
Score = 89.8 bits (48), Expect = 1e-16
Identities = 52/54 (96%), Gaps = 0/54 (0%)
Strand=Plus/Minus
Query 2330 ACCTTCTCGTGGTAACCAAAAGTGCGGATCAAAACAGCCCACATGTCTGATGTG 2383
||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 842 ACCTTTTCGTGGTAACCAAAAGTGCGGATCAAAATAGCCCACATGTCTGATGTG 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118322684565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5