BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486400
Length=1762
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59350.1 | Symbols: | Protein kinase superfamily protein | ... 2724 0.0
AT2G43230.2 | Symbols: | Protein kinase superfamily protein | ... 1146 0.0
> AT3G59350.1 | Symbols: | Protein kinase superfamily protein
| chr3:21932685-21935192 FORWARD LENGTH=1781
Length=1781
Score = 2724 bits (1475), Expect = 0.0
Identities = 1691/1789 (95%), Gaps = 39/1789 (2%)
Strand=Plus/Plus
Query 1 CTAAATTTGGGATAAAAA-TGTCTATTCTTGATCATTTCCTCTCTGTATCTCTCTGCTTT 59
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 4 CTAAATTTGGGATAAAAATTGTCTATTCTTGATCA-TTCCTCTCTGTATCTCTCTGCTTT 62
Query 60 TGACACCTTCTCTTAGCTG--TTTTCATCTTTTATCTCTGTTTTTAAAATCTTTTGCCTC 117
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 63 TGACACCTTCTCTTAGCTGTTTTTTCATCTTTTATCTCTGTTTTTAAAATCTTTTGGCTC 122
Query 118 TTTCAAAGGGTTTCGAGTTGTTTTGAGTTCTTTGGG-TT--TCCCAAATTTCTCCACGAG 174
|||| ||||||||||||| |||||||||||||||| || |||||||||||||||||||
Sbjct 123 TTTCGAAGGGTTTCGAGTCCTTTTGAGTTCTTTGGGCTTCCTCCCAAATTTCTCCACGAG 182
Query 175 CTCGACCCCTTTCGTATCTTCCTTCTCAttttttttGCCAAATTCATTCGATCCGTCTTT 234
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 183 CTCGACCCCTTTCGTATCTTCCTTCTCA-TTTTTTTGCCAAATTTATTCGATCCGTCTTT 241
Query 235 CACTATGTATCCGATGGATTCTGACTATCATCGTCGTGGTCTGGTGGCGAACGATCGTTC 294
|||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||||
Sbjct 242 CACTATGTATCCGATGGATTCTGATTACCATCGCCGTGGTCTGGTGGCAAACGATCGTTC 301
Query 295 ACCAGCTCACTTTGTTAGACTGGATAAACCGAGAGCCGTAGACGATCTCTATATAGGCAA 354
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 302 ACCAGCTCAGTTTGTTAGGCTGGATAAACCGAGAGCCGTAGACGATCTCTATATAGGCAA 361
Query 355 GAGAGAAAAGATGCGTAGGTGGTTGTGCTGTGCTTGCCACGTTGAAGAACCTTACCATTC 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GAGAGAAAAGATGCGTAGGTGGTTGTGCTGTGCTTGCCACGTTGAAGAACCTTACCATTC 421
Query 415 TTCTGAAAATGAACACCTGAGAAGCCCTAAGCACCACAATGATTTTGGGCATCACACTAG 474
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TTCTGAAAATGAACACCTCAGAAGCCCTAAGCACCACAATGATTTTGGGCATCACACTAG 481
Query 475 AAAACCACAGGCAGCTGTGAAGCCTGATGCTTTGAAGGAGCCTCCATCTATTGATGTGCC 534
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 AAAACCACAGGCGGCTGTGAAGCCTGATGCTTTGAAGGAGCCTCCATCTATTGATGTGCC 541
Query 535 TGCATTGTCATTGGATGAGCTGAAAGAAAAGACTGATAATTTTGGATCAAAGGCATTGAT 594
||||||||||||||||||| ||||||||||||| ||||| |||||||||||| |||||||
Sbjct 542 TGCATTGTCATTGGATGAGTTGAAAGAAAAGACCGATAACTTTGGATCAAAGTCATTGAT 601
Query 595 TGGTGAAGGATCTTACGGAAGAGCCTACTATGCAACCTTGAAAGAAGGGAAAG-CTGTGG 653
|||||||||||||||||| |||||||| ||||||||||||||||| || |||| |||| |
Sbjct 602 TGGTGAAGGATCTTACGGCAGAGCCTATTATGCAACCTTGAAAGATGG-AAAGGCTGTCG 660
Query 654 CGGTGAAGAAGCTTGATAATTCAGCTGAACCTGAATCAAATGTTGAGTTCTTGACTCAGG 713
|||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 661 CGGTGAAGAAGCTTGACAATGCAGCGGAACCTGAATCAAATGTTGAGTTCTTGACTCAGG 720
Query 714 TCTCGAGGGTTTCCAAGCTGAAGCACGATAATTTTGTTGAGCTCTTCGGTTATTGTGTTG 773
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCTCTAGGGTTTCCAAGCTGAAGCACGATAATTTTGTTGAGCTCTTCGGTTATTGTGTTG 780
Query 774 AAGGGAATTTCCGCATTCTTGCGTATGAGTTTGCCACTATGGGATCTTTACATGACATCT 833
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 781 AAGGGAATTTCCGCATTCTTGCGTATGAGTTTGCTACTATGGGATCTTTACATGACATCT 840
Query 834 TACACGGGAGGAAAGGAGTCCAAGGAGCACAACCAGGTCCGACACTTGATTGGATCCAAC 893
|||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 841 TACACGGGAGGAAAGGAGTCCAAGGAGCACAACCAGGTCCTACGCTTGACTGGATCCAAC 900
Query 894 GGGTCAGAATAGCAGTTGATGCAGCTAGAGGACTCGAGTATTTACATGAGAAAGTTCAAC 953
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 901 GGGTCAGAATAGCAGTTGATGCAGCTAGAGGACTTGAGTATTTGCATGAGAAAGTTCAAC 960
Query 954 CTGCGGTAATACACAGAGATATTCGATCTAGCAATGTGCTTCTCTTTGAAGACTTTAAAG 1013
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 961 CTGCAGTAATACACAGAGATATTCGATCTAGCAATGTGCTTCTCTTTGAAGATTTTAAAG 1020
Query 1014 CCAAGATCGCTGATTTTAATCTATCGAATCAATCTCCTGATATGGCTGCTCGTCTTCATT 1073
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1021 CCAAGATCGCTGATTTTAATCTATCGAACCAATCTCCTGATATGGCTGCTCGTCTTCATT 1080
Query 1074 CTACCAGAGTTTTGGGAACCTTCGGTTACCATGCACCAGAGTATGCTATGACTGGTCAAC 1133
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1081 CTACCAGAGTTTTGGGAACCTTCGGTTACCACGCACCAGAGTATGCGATGACTGGTCAAC 1140
Query 1134 TGACACAGAAGAGTGATGTTTATAGTTTTGGTGTCGTGCTATTGGAGCTCTTGACTGGTA 1193
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1141 TGACACAGAAGAGTGATGTTTATAGTTTTGGTGTGGTGCTTTTGGAGCTCTTGACTGGTA 1200
Query 1194 GGAAACCCGTTGATCATACGATGCCTCGTGGTCAACAAAGTCTTGTCACTTGGGCTACTC 1253
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1201 GGAAACCCGTCGATCATACGATGCCTCGTGGTCAACAAAGTCTTGTTACTTGGGCTACTC 1260
Query 1254 CGAGGCTAAGTGAAGACAAAGTGAAGCAATGTGTTGATCCAAAACTGAAAGG-AGAATAT 1312
| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1261 CAAGGCTAAGTGAAGACAAAGTGAAGCAATGTGTTGATCCAAAACT-AAAGGGAGAATAT 1319
Query 1313 CCTCCTAAAGCTGTTGCAAAGCTCGCGGCAGTAGCAGCGTTGTGTGTGCAATATGAATCA 1372
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1320 CCTCCTAAAGCTGTTGCAAAGCTCGCTGCAGTAGCAGCATTGTGTGTGCAATATGAATCA 1379
Query 1373 GAGTTTAGGCCGAACATGAGCATTGTGGTAAAAGCTCTTCAACCATTGTTGAGGTCATCA 1432
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GAGTTTAGGCCAAACATGAGCATTGTGGTAAAAGCTCTTCAACCATTGTTGAGGTCATCA 1439
Query 1433 ACAGCAGCAGCTGTTCCAGTCCAGGAAACCTGATTCTTCTGTGCCATAATAATAATGGAA 1492
|||||||||||||| |||||||||||| |||||||||||||||| ||| || |||||||
Sbjct 1440 ACAGCAGCAGCTGTACCAGTCCAGGAAGCCTGATTCTTCTGTGCAATAGCAACAATGGAA 1499
Query 1493 GATTGGTTTCTGTTTCAATTGTTGCCATACCGTATAAATGTGTTCTTAAAGAGAGTCTTT 1552
|||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GATTGGGTTCGGTTTCAGTTGTTGCCATACCGTATAAATGTGTTCTTAAAGAGAGTCTTT 1559
Query 1553 TTGTCTGAGGCTTTTCTTCAGTTGGGATGTATATGTTTTTATTAAGGTGATGAGTAGTGA 1612
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1560 TTGTC-GAGGCTTTTCTTCAGTTGGGATGTATATGTTTT-ATTAAGGTGATGAGTAGTGA 1617
Query 1613 TTTGGTGTGTCTTTTCAAATG-TTTGGTGGAGTCTGTTTCTTTCTTCTTATAACAATCTA 1671
||||||||||||||||||||| |||| |||||||||||| || | ||||||| ||| ||
Sbjct 1618 TTTGGTGTGTCTTTTCAAATGCTTTG-TGGAGTCTGTTT-TT-C--CTTATAAAAATTTA 1672
Query 1672 TTCTATATCTGGTTT-T-TT--G-----CT-CTTT-CT-T--CTT--T-AACATAATACT 1714
||||| ||||||||| | || | || |||| || | ||| | |||| ||||||
Sbjct 1673 TTCTAAATCTGGTTTGTATTTTGGGGGTCTTCTTTGCTCTTTCTTCATTAACAGAATACT 1732
Query 1715 AATTATAAGTTTTTTCATATACAATC-TTGAAAGGAATTTTCATCAGTT 1762
||||||||| |||| ||||||||| | ||||||||||||||||||||||
Sbjct 1733 AATTATAAGCTTTT-CATATACAAACCTTGAAAGGAATTTTCATCAGTT 1780
> AT2G43230.2 | Symbols: | Protein kinase superfamily protein
| chr2:17966251-17968635 FORWARD LENGTH=1736
Length=1736
Score = 1146 bits (620), Expect = 0.0
Identities = 1000/1182 (85%), Gaps = 31/1182 (3%)
Strand=Plus/Plus
Query 280 GGCGAACGATCGTTCAC-CAGCTCACTTTGTTAGACTGGATAAACCGAGAGCCGTAGACG 338
|||||| |||||| ||| ||| |||||||| || |||||||||||||||| |||||||
Sbjct 359 GGCGAATGATCGTACACAAAGC-AACTTTGTTCGATTGGATAAACCGAGAGCTGTAGACG 417
Query 339 ATCTCT-ATATAGGCAAGAGAGAAAAGATGCGTAGGTGGTTGTGCTGTGCTTGCCACGTT 397
|||| | ||||||||||||||| |||||||||||||||||||||||| |||| | ||
Sbjct 418 ATCT-TGATATAGGCAAGAGAGGGAAGATGCGTAGGTGGTTGTGCTGTTCTTGTCGTGTA 476
Query 398 GAAGAACCTTA-CCATTCTTCTGAAAATGAA-C-ACCTGAGAA--GC-CCTAAGCACCAC 451
||||| |||| ||| || |||||||| || | | ||| || | |||| | |||
Sbjct 477 CAAGAATCTTACCCA-TCAGCTGAAAAT-AACCGA-TTGAAAACCCCTCCTACTCGCCAT 533
Query 452 AATGATTTTGGGCATCAC-ACTAGAAAACCA-CAGGCAGCTGTGAAGCCTGATGCTTTGA 509
| || | ||| | | || || |||||| || || || ||||||||||| || |||||
Sbjct 534 TACGACTATGGACGTAACAACAAGAAAA-CACCA-GCTCCTGTGAAGCCTCCTGTTTTGA 591
Query 510 AGGAGCCTCCATCTATTGATGTGCCTGCATTGTCATTGGATGAGCTGAAAGAAAAGACTG 569
|||||||||| |||||||||| || ||| ||||||||| |||||| ||||||||||||
Sbjct 592 AGGAGCCTCCGCCTATTGATGTCCCCGCAATGTCATTGGTTGAGCTCAAAGAAAAGACTC 651
Query 570 ATAATTTTGGATCAAAGGCATTGATTGGTGAAGGATCTTACGGAAGAGCCTACTATGCAA 629
| |||||||||||||||||||||||||| |||||||| || ||||||| ||||| ||||
Sbjct 652 AGAATTTTGGATCAAAGGCATTGATTGGAGAAGGATCCTATGGAAGAGTGTACTACGCAA 711
Query 630 CCTTGAAAGAAGGGAAAGCTGTGGCGGTGAAGAAGCTTGATAATTCAGCTGAACCTGAAT 689
||| || || ||||| || ||||| ||||| |||||||||||| || ||||||| |||
Sbjct 712 ACTTTAATGATGGGAAGGCCGTGGCTGTGAAAAAGCTTGATAATGCATCTGAACCCGAAA 771
Query 690 CAAATGTTGAGTTCTTGACTCAGGTCTCGAGGGTTTCCAAGCTGAAGCA-CGATAATTTT 748
||||||| |||||||||||||||||||| | ||||| | |||||| | || ||||||
Sbjct 772 CAAATGTCGAGTTCTTGACTCAGGTCTCTAAAGTTTCGAGGCTGAA-AAGTGACAATTTT 830
Query 749 GTTGAGC-TCTTCGGTTATTGTGTTGAAGGGAA-TTTCCGCATTCTTGCGTATGAGTTTG 806
||| ||| |||| ||||||||||| |||||||| || || | ||||| ||||||||||
Sbjct 831 GTTCAGCTTCTT-GGTTATTGTGTAGAAGGGAACCTT-CGTGTCCTTGCTTATGAGTTTG 888
Query 807 CCACTATGGGATCTTTACATGACATCTTACACGGGAGGAAA-GGAGTCCAAGGAGCACAA 865
|||| ||| |||| || || |||||||||||||||| |||| ||||| ||||||||||||
Sbjct 889 CCACAATGAGATCATTGCACGACATCTTACACGGGA-GAAAGGGAGTGCAAGGAGCACAA 947
Query 866 CCAGGTCCGACACTTGATTGGATCCAACGGGTCAGAATAGCAGTTGATGCAGCTAGAGGA 925
|| ||||| |||||||| ||||| ||||| ||| || | || ||||||||||||| ||||
Sbjct 948 CCTGGTCCAACACTTGAGTGGATGCAACGAGTCCGAGTTGCGGTTGATGCAGCTAAAGGA 1007
Query 926 CTCGAGTATTTACATGAGAAAGTTCAACCTGCGGTAATACACAGAGATATTCGATCTAGC 985
| || || ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1008 TTAGAATACTTACACGAGAAAGTTCAACCTGCGGTTATACACAGAGATATTCGATCTAGC 1067
Query 986 AATGTGCTTCTCTTT-GAAGACTTT-AAAGCCAAGATCGCTGATTTTAATCTATCGAATC 1043
||||||||| | ||| ||||| ||| ||||||||||| ||||| |||||||| || ||||
Sbjct 1068 AATGTGCTTAT-TTTCGAAGA-TTTCAAAGCCAAGATTGCTGACTTTAATCTTTCCAATC 1125
Query 1044 AATCTCCTGATATGGCTGCTCGTCTTCATTCTACCAGAGTTTTGGGAACCTTCGGTTACC 1103
|| |||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |
Sbjct 1126 AAGCTCCTGATATGGCTGCTCGTCTTCATTCCACTAGAGTTTTGGGGACCTTCGGTTATC 1185
Query 1104 ATGCACCAGAGTATGCTATGACTGGTCAACTGACACAGAAGAGTGATGTTTATAGTTTTG 1163
|||||||||| ||||| ||||| || || |||||||||||||||||||||| |||||||
Sbjct 1186 ATGCACCAGAATATGCGATGACAGGACAGTTGACACAGAAGAGTGATGTTTACAGTTTTG 1245
Query 1164 GTGTCGTGCTATTGGAGCT-CTTGACTGGTAGGAAACCCGTTGATCATACGATGCCTCGT 1222
| || ||||| ||||| || ||| || || || ||||| ||||||||||| |||||||||
Sbjct 1246 GAGTTGTGCTTTTGGAACTTCTT-ACCGGGAGAAAACCGGTTGATCATACTATGCCTCGT 1304
Query 1223 GGTCAACAAAGTCTTGTCACTTGGGCTACTCCGAGGCTAAGTGAAGACAAAGTGAAGCAA 1282
|||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 1305 GGTCAACAGAGTCTTGTCACTTGGGCTACTCCAAGGCTGAGTGAAGACAAAGTGAAACAA 1364
Query 1283 TGTGTTGATCCAAAACTGAAAGGAGAATATCCTCCTAAAGCTGTTGCAAAGCTCGCGGCA 1342
||||||||||||||||| |||||||| |||||||||||||| || |||||||| || ||
Sbjct 1365 TGTGTTGATCCAAAACTCAAAGGAGAGTATCCTCCTAAAGCAGTGGCAAAGCTTGCAGCG 1424
Query 1343 GTAGCAGCGTTGTGTGTGCAATATGAATCAGAGTTTAGGCCGAACATGAGCATTGTGGTA 1402
|| |||||||||||||||||||| ||| ||||||||||||| |||||||||||||| |||
Sbjct 1425 GTTGCAGCGTTGTGTGTGCAATACGAAGCAGAGTTTAGGCCAAACATGAGCATTGTAGTA 1484
Query 1403 AAAGCTCTTCAACCATTGTTGAGGTCATCAACAGCAGCAGCT 1444
|||||||||||||| | ||||||||| ||||||| || |||
Sbjct 1485 AAAGCTCTTCAACCGCTCTTGAGGTCAGCAACAGCTGCTGCT 1526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87148146120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5