BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486402
Length=1866
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59360.1 | Symbols: UTR6, ATUTR6 | UDP-galactose transporter... 2665 0.0
AT2G43240.1 | Symbols: | Nucleotide-sugar transporter family p... 1404 0.0
> AT3G59360.1 | Symbols: UTR6, ATUTR6 | UDP-galactose transporter
6 | chr3:21935283-21940244 REVERSE LENGTH=1902
Length=1902
Score = 2665 bits (1443), Expect = 0.0
Identities = 1602/1675 (96%), Gaps = 25/1675 (1%)
Strand=Plus/Plus
Query 175 TTGATTATTCACTCTGGAGCTCGAGTTCTGGATCCGTGTGGCTGGAGGGAATGTTTTGTT 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 208 TTGATTATTCACTCTGGAGCTCGAGTTCTGGATCCGTGTGGCTGGAGGGAATGTTCTGTT 267
Query 235 AAGCTGATTGTTTAGGCTTGTTGGCTCAGTCTA-ATAATTGTCATATTGAGAAAG---AC 290
|||||||||||||||||||||||| ||||| || | |||||||| |||||||||| ||
Sbjct 268 AAGCTGATTGTTTAGGCTTGTTGGATCAGTATAGA-AATTGTCAGATTGAGAAAGACAAC 326
Query 291 AAATGAAGAACGGTATAGCTGAGTGCAGTGTC-TGTCATTCAAAATTGGTCTCTCCCGGT 349
|||||||||||||||||||||||||| || | ||||||||||||||||||||||| |||
Sbjct 327 AAATGAAGAACGGTATAGCTGAGTGCCCTG-CATGTCATTCAAAATTGGTCTCTCCTGGT 385
Query 350 AGCAAAACTATTTCCAGGGCTTATGATGACCACAAGATTAGGGTTTCCTCAAAACAACGT 409
|||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 386 AGCAAAACTATTTCTAGGGCTTATGACGACCACAAGATTAGGGTATCCTCAAAACAACGT 445
Query 410 GTCCTCAATGTCCTTTTGGTAGTAGGTGATTGCATGCTTGTTGGTCTACAGCCTGTCTTG 469
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 446 GTCCTCAATGTCCTTTTGGTTGTAGGTGATTGCATGCTTGTTGGTCTCCAGCCTGTCTTG 505
Query 470 GTGTATATGTCGAAGGTTGATGGGAAATTCAACTTCAGTCCTATTAGCGTCAACTTCTTG 529
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 GTGTATATGTCGAAGGTGGATGGGAAATTCAACTTCAGTCCTATTAGCGTCAACTTCTTG 565
Query 530 ACAGAAATCGCAAAAGTTATTTTTGCGATCGTGATGCTTTTAATCCAGGCCAGGCACCAA 589
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 566 ACAGAAATCGCAAAAGTTATTTTTGCGATTGTGATGCTTTTAATCCAGGCCAGGCACCAA 625
Query 590 AAAGTTGGAGAGAAGCCTCTTCTATCCGTTTCCACATTTGTCCAGGCAGCTCGAAATAAT 649
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 626 AAAGTTGGAGAGAAGCCTCTTCTATCCGTTTCCACATTTGTCCAGGCAGCCCGAAATAAT 685
Query 650 GTGCTTCTTGCTGTTCCAGCCCTGTTGTATGCAATTAATAACTATCTGAAGTTCACAATG 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 GTGCTTCTTGCTGTTCCAGCCCTGTTGTATGCAATTAATAACTATCTGAAGTTCACAATG 745
Query 710 CAGCTATATTTTAATCCTGCTACTGTAAAGATGCTTAGCAACCTAAAGGTTCTGGTCATT 769
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 CAGCTATATTTCAATCCTGCTACTGTAAAGATGCTTAGCAACCTAAAGGTTCTGGTCATC 805
Query 770 GCTGTTCTATTAAAGATGGTAATGAAGCGGCGGTTTTCTATCATACAGTGGGAGGCACTT 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 GCTGTTCTATTAAAGATGGTAATGAAGCGGCGGTTTTCTATCATACAGTGGGAGGCACTT 865
Query 830 GCTCTGCTGCTGATAGGGATTAGTGTAAACCAACTACGTTCTCTTCCTGAAGGTGCTACA 889
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 866 GCTCTGTTGCTGATAGGGATTAGTGTAAACCAATTACGTTCTCTTCCTGAAGGTGCTACA 925
Query 890 GCCATTGGAATTCCTCTTGCTACGGGTGCATACGTCTGTACCGTTATCTTTGTTACTGTC 949
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 926 GCCATTGGAATTCCTCTTGCTACGGGTGCATACGTCTGCACCGTTATCTTTGTCACTGTC 985
Query 950 CCGTCAATGGCATCTGTCTTCAACGAGTATGCTCTAAAGAGTCAGTATGACACAAGCATC 1009
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 CCGTCAATGGCATCTGTCTTCAACGAGTATGCTCTAAAGAGTCAGTATGACACAAGCATA 1045
Query 1010 TATCTTCAGAATTTATTTCTCTATGGTTATGGTGCGATATTCAACTTTCTTGGAATACTA 1069
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1046 TATCTTCAGAATTTATTCCTCTATGGTTATGGTGCAATATTCAACTTTCTTGGAATACTA 1105
Query 1070 GGAACTGTTATATATAAAGGTCCTGGCAGCTTTGATATCCTACAAGGACATTCTAGGGCT 1129
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1106 GGAACTGTTATATATAAAGGTCCTGGCAGCTTTGACATCCTACAAGGACATTCTAGGGCT 1165
Query 1130 ACCATGTTTTTGATACTGAACAACGCAGCACAAGGGATTTTATCCTCCTTTTTCTTCAAA 1189
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1166 ACCATGTTTTTGATACTGAACAACGCAGCACAAGGGATTTTATCGTCCTTTTTCTTCAAA 1225
Query 1190 TATGCAGATACAATCTTGAAGAAATATTCATCGACAGTTGCCACAATATTTACGGGCATA 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1226 TATGCAGATACAATCTTGAAGAAATATTCATCGACAGTTGCCACAATATTTACTGGCATA 1285
Query 1250 GCATCTGCAGCGCTCTTTGGACATGTTATAACCATGAACTTTCTTCTTGGAATTTCTATC 1309
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1286 GCATCTGCTGCGCTCTTTGGACATGTTATAACCATGAACTTCCTTCTCGGAATTTCTATC 1345
Query 1310 GTTTTCATTTCAATGCACCAGTTCTTTTCACCACTTGCCAAAGTGAGAGACGAGCAACAA 1369
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1346 GTTTTCATTTCGATGCACCAGTTCTTTTCACCACTTGCCAAAGCGAGAGACGAGCAACAA 1405
Query 1370 CAGAATGGGAACCTAGAACTAGTCAATGCAAAGGATACTCACAGGGCTAATGAATCATTC 1429
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1406 CAGAATGGGAACCTAGAACTAGGCAACACAAAGGATACTCACAGGGCTAATGAATCATTC 1465
Query 1430 ATCAACATGGCCGCAGGGGCAAATGAAGAGGCTAGTCACCGTGGTGAATCAGACGACAGA 1489
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1466 ATCAACATGGCCGCAGGAGCAAATGAAGAGGCTAGTCACCGCGGTGAATCAGACGACAGG 1525
Query 1490 ACCCCATTGCTTCCCAGATGAAA-GTTTCTTAAAAGTAGGTACAGGATTTTTGTTCTGAA 1548
|| ||| |||||||||||||||| |||||||||| | | | ||||||||| |||
Sbjct 1526 ACTCCACTGCTTCCCAGATGAAAAGTTTCTTAAA--T-G--A-----TTTTTGTTCGGAA 1575
Query 1549 GAATTCTTTTGGCCAAGAATATTCTAGAAATTGGGGGGTTTTCCAGTCGTATACTAGTAG 1608
||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||
Sbjct 1576 GAATTATTTTGGCCAAGAATATTCTAGAAATTGGGGG-TTTTCCATTCGTATACTAGCAG 1634
Query 1609 AGGATACAGTGAAGCAAATTTCATGACACCAACTCTTACTTCTCTCAAGAGTCGGTTTTA 1668
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1635 AGGAAACAGTGAAGCAAACTTCATGACACCAACTCTTACTTCTCTCAAGAGTCGGTTTTA 1694
Query 1669 A-GTTCGATGAAGAACCTCTCAAGTCTGAAGCTGTATTGTTTTAAGATAGAGTGAGAACA 1727
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1695 AAGTTCGTTGAAGAACCTCTCAAGTCTGAAGCTGTATTGTTTTAAGATAGAGTGAGAACA 1754
Query 1728 AACTTGGTAAGTGATGATATATGTATTTTGGATATATAATATTTGTATTCTTTGGTTTTT 1787
|| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1755 AAATTGGTAAGTGAT-ATAT--GTATTTTGGATATATAATATTTGTATTCTTTGGTTTTT 1811
Query 1788 GCAAAATATCAGGTCAC--TTTTTTGCTCTTGTTTATACAATTACTCTCACAGTT 1840
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1812 GCAAAATATCAGGTCACACTTTTTTGCTCTTGTTTATACAATTACTCTCACAGTT 1866
Score = 235 bits (127), Expect = 1e-60
Identities = 162/177 (92%), Gaps = 9/177 (5%)
Strand=Plus/Plus
Query 7 TTGTGAAATCAAAGCAAAAAagagag-a-gagagGTCGTGTTAGATAATTAGAGCGCACT 64
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1 TTGTGAAATCAAAGCAAAAAAGAGAGAAGGAGAGGTCGTGTTAGATAATTAGAGCGCACT 60
Query 65 TGCGAACAACAACCAACGACGACCCACTGATTC--TC-C-TC-TCT--GCATATTCCTTC 117
||||| ||||||| ||||||||||||||||||| || | || ||| |||||||||||
Sbjct 61 TGCGAGCAACAACGAACGACGACCCACTGATTCAATCTCCTCCTCTCTGCATATTCCTTG 120
Query 118 GCATCTTTTCTGGTACCCAAGCTGAGTCTTTGGAGAGTTTCTAGATCTTGTTCAATT 174
||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||
Sbjct 121 GCATCTTTTCTGGTACCGAAGCTGAGTCTCTGGAGAGTTTCTAGATCTTCTTCAATT 177
> AT2G43240.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr2:17970859-17975867 REVERSE LENGTH=1847
Length=1847
Score = 1404 bits (760), Expect = 0.0
Identities = 1086/1242 (87%), Gaps = 28/1242 (2%)
Strand=Plus/Plus
Query 293 ATGAAGAACGGTATAGCTGAGTGCAGTGTCTGTCATTCAAAATTGGTCTCTCCCGGTAGC 352
||||||||||| || ||||||||||| || |||| ||||| ||||| |||||| |||||
Sbjct 288 ATGAAGAACGGGATGGCTGAGTGCAGCGTATGTCGTTCAAGGTTGGTTTCTCCCAGTAGC 347
Query 353 AAAACTATTTCCAGGGCTTATG---A-TGAC--C-ACAAGATTAGGGTTTCCTCAAAACA 405
||| ||||||| |||||||||| | | || | |||||||||| || |||||||||||
Sbjct 348 AAAGCTATTTCAAGGGCTTATGACAACT-ACAACTACAAGATTAGAGTATCCTCAAAACA 406
Query 406 ACGTGTC-CTCAATGTCCTTTTGGTAGTAGGTGATTGCATGCTTGTTGGTCTACAGCCTG 464
||| | | ||||||||| |||||||||| ||||| |||||||| |||||||||||||| |
Sbjct 407 ACGAG-CTCTCAATGTCTTTTTGGTAGTCGGTGACTGCATGCTAGTTGGTCTACAGCCCG 465
Query 465 TCTTGGTGTATATGTCGAAGGTTGATGGGAAA-TTCAACTTCAGTCCTATTAGCGTCAAC 523
|||| ||||| ||||| || || ||| ||||| |||||||| ||||||||||||||||||
Sbjct 466 TCTTAGTGTACATGTCTAAAGTGGAT-GGAAAGTTCAACTTTAGTCCTATTAGCGTCAAC 524
Query 524 TTCTTGACAGAAATCGCAAAAGTTATTTTTGCGATCGTGATGCTTTTAATCCAGGCCAGG 583
||||||||||||||||| ||||||||||| ||||| || ||||| ||| |||||||||||
Sbjct 525 TTCTTGACAGAAATCGCGAAAGTTATTTTCGCGATGGTCATGCTATTATTCCAGGCCAGG 584
Query 584 CACCAAAAAGTTGGAGAGAAGCCTCTTCTATC-CGTTTCCACATTTGTCCAGGCAGCTCG 642
|||||||||||||||||||| ||||| ||||| | ||||||| |||||||||||||||||
Sbjct 585 CACCAAAAAGTTGGAGAGAAACCTCTACTATCTC-TTTCCACGTTTGTCCAGGCAGCTCG 643
Query 643 AAATAATGTGCTTCTTGCTGTTCCAGCCCTGTTGTATGCAATTAATAACTATCTGAAGTT 702
|| ||| ||||||| ||||||||||| ||||||||| |||||||||||||| |||||
Sbjct 644 GAACAATATGCTTCTCGCTGTTCCAGCAGGGTTGTATGCCATTAATAACTATCTTAAGTT 703
Query 703 CACAATGCAGCTATATTTTAATCCTGCTACTGTAAAGATGCTTAGCAACCTAAAGGTTCT 762
|||||||||||||||||| |||||||||||||| |||||||| ||||| ||||| |||||
Sbjct 704 CACAATGCAGCTATATTTCAATCCTGCTACTGTGAAGATGCTCAGCAATCTAAAAGTTCT 763
Query 763 GGTCATTGCTGTTCTATTAAAGATGGTAATGAAGCGGCGGTTTTCTATCATACAGTGGGA 822
||| |||||||| ||| | |||||| |||||||||| |||||||| ||||||||||||||
Sbjct 764 GGTGATTGCTGTACTACTGAAGATGATAATGAAGCGTCGGTTTTCCATCATACAGTGGGA 823
Query 823 GGCACTTGCTCTGCTGCTGATAGGGATTAGTGTAAACCAACTACGTTCTCTTCCTGAAGG 882
||||||||| || ||||||||||||||||| |||| || || |||||||||||||||||
Sbjct 824 AGCACTTGCTTTGTTGCTGATAGGGATTAGTATAAATCAGCTGCGTTCTCTTCCTGAAGG 883
Query 883 TGCTACAGCCAT-TGG-AATTCCTCTTGCTACGGGTGCATACGTCTGTACCGTTATCTTT 940
|||||| | | ||| |||| ||||||||||||||||| | |||||| ||||||||
Sbjct 884 AGCTACA-AC-TGTGGCTGTTCCAATTGCTACGGGTGCATACATATGTACCTTTATCTTT 941
Query 941 GTTACTGTCCCGTCAATGGCATCTGTCTTCAACGAGTATGCTCTAAAGAGTCAGTATGAC 1000
||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 942 GTTACTGTCCCATCTTTGGCATCTGTCTACAACGAGTATGCTCTAAAGAGTCAGTATGAC 1001
Query 1001 ACAAGCATCTATCTTCAGAATTTATTTCTCTATGGTTATGGTGCGATATTCAACTTTCTT 1060
|||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 1002 ACAAGCATTTATCTCCAGAACTTATTTCTTTATGGTTATGGTGCGATATTCAACTTCCTC 1061
Query 1061 GGAATACTAGGAACTGTTATATATAAAGGTCCTGGCAGCTTTGATATCCTACAAGGACAT 1120
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1062 GGAATACTAGGAACTGTTATATATAAAGGTCCTGGCAGTTTTGACATCCTACAAGGACAT 1121
Query 1121 TCTAGGGCTACCATGTTTTTGATACTGAACAACGCAGCACAAGGGATTTTATCCTCCTTT 1180
||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1122 TCTAGGGCTACTATGTTTCTGATACTGAACAACGCAGCACAAGGGATTCTATCCTCCTTT 1181
Query 1181 TTCTTCAAATATGCAGATACAATCTTGAAGAAATATTCATCGACAGTTGCCACAATATTT 1240
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 1182 TTCTTCAAATATGCAGATACAATCTTGAAGAAATATTCGTCCACAGTAGCCACAATATTT 1241
Query 1241 ACGGGCATAGCATCTGCAGCGCTCTTTGGACATGTTAT-AACCATGAACTTTCTTCTTGG 1299
|| ||||||||||||||||| |||||||||||| | || ||| ||||| |||||||| ||
Sbjct 1242 ACTGGCATAGCATCTGCAGCACTCTTTGGACATAT-ATTAACAATGAATTTTCTTCTGGG 1300
Query 1300 AATTTCTATCGTTTTCATTTCAATGCACCAGTTCTTTTCACCACTTGCCAAAGTGAGAGA 1359
||||||||| ||||||||||||||||| |||||||||||||| ||| | |||| | |||
Sbjct 1301 AATTTCTATAGTTTTCATTTCAATGCATCAGTTCTTTTCACCCCTTTCAAAAGCAAAAGA 1360
Query 1360 CGAGCAACAACAGAATGGGAACCTAGAACTAGTCAATGCAAAGGATA-CTCACAGGGCTA 1418
||| |||||| | | || ||| |||| |||| | ||||||||| | || |||||||
Sbjct 1361 CGAACAACAA-A-AC-GGAAACATAGAGTTAGTTGACGCAAAGGATGGC-CATAGGGCTA 1416
Query 1419 ATGAATCATTCATCAACATGGCCGCAGGGGCAAATGAAGAGGCTAGTCACCGTGGTGAAT 1478
| || ||||||||||||||||| ||||| |||| |||||||||||||||||| |||||
Sbjct 1417 AAGACTCATTCATCAACATGGCAGCAGGAGCAACTGAAGAGGCTAGTCACCGCATTGAAT 1476
Query 1479 CAGACGACAGAACCCCA-TTGCTTCCCAGATGAAAG-TTTCT 1518
|||| |||||| ||| || |||||||||| ||| |||||
Sbjct 1477 CAGATGACAGAGTGCCACTT-CTTCCCAGATAAAAACTTTCT 1517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92369002800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5