BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486404
Length=491
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59455.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 604 2e-172
AT5G39532.1 | Symbols: | Pseudogene of AT3G59455 | chr5:158309... 302 3e-81
> AT3G59455.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr3:21976820-21977393
FORWARD LENGTH=574
Length=574
Score = 604 bits (327), Expect = 2e-172
Identities = 445/500 (89%), Gaps = 16/500 (3%)
Strand=Plus/Plus
Query 1 AGATACTAAATAATCAGAAAATGAAGATCAATCCATTGATGTTCATCGCCTTGATGGTAC 60
||||||||| | ||||||||||||||| || | |||||||||||||||||||| | ||||
Sbjct 1 AGATACTAAGTTATCAGAAAATGAAGAACATTTCATTGATGTTCATCGCCTTGGTTGTAC 60
Query 61 TCTTGACATCATTCCCCACTCCAACGCTCTCTTATTGCAAAGAGTCACTTTATTTATGTA 120
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 61 TCTTGACATCATTCCCCACTCCAACGCTCTCTTATTGCAAAGAGTCACTTCATTTATGCA 120
Query 121 TACAACATATGAA----A--GATAGAGCCACGTGGCTGAAATGTTGTGATAGACTAATAG 174
| |||||| |||| | |||||| |||||||| |||| ||||||||||||||||||
Sbjct 121 TGCAACATTTGAAGTTGAACGATAGACCCACGTGGTTGAAGTGTTGTGATAGACTAATAA 180
Query 175 TAGCAGGACCATGTATGTGTAAGTATATTAAAGATCCTGTGCAAAAGAAAGATGCTTACC 234
|| ||||||||||||||||||||||||||||||||||||| ||| |||||| ||||| |
Sbjct 181 TACCAGGACCATGTATGTGTAAGTATATTAAAGATCCTGTACAATGGAAAGAAGCTTATC 240
Query 235 GTCTTATGGCTTCTTGTGGAAAGACTATTCCTATAAATCAG-GATCTCAGGAAATATTAC 293
|||||||||||||||||||||||||| ||||| ||||||| | ||||| | |||| |
Sbjct 241 GTCTTATGGCTTCTTGTGGAAAGACTGTTCCTCTAAATCAAAG-TCTCAAGTCCTATTTC 299
Query 294 AAGTGTGGCTAAAAATAGTCAACCAACGAAAGCGATAAGCGGTCGTCAAGCCGAACCGGA 353
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 300 AAGTGTGGCTAAAAATAGTCAACCAACAAAAGCAATAAGCGGTCGTCAAGCCGAACCGGA 359
Query 354 GATACTTAAATA-GATTAGTACTTATATCGAGTGTTTCCTTGTCTTCTTTTAATCGT-TC 411
||||||||| || ||||||| | | ||| ||| |||||||||||| |||||||||| |
Sbjct 360 GATACTTAA-TAAGATTAGT--T-A-ATCAAGTCTTTCCTTGTCTTTTTTTAATCGTAT- 413
Query 412 AAGTTGTTGCTCGAATTGGCCTTGTTTATGTTTATGAACCATCTCTCCCACTTTCCACGT 471
|||||||||||| |||||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct 414 AAGTTGTTGCTCTAATTGGCCTTCATTATATTTATGAACCATCTCTCCCACATTCCACGT 473
Query 472 TTTTCTTGCTTTTTGGAATT 491
||||||||||||||||||||
Sbjct 474 TTTTCTTGCTTTTTGGAATT 493
> AT5G39532.1 | Symbols: | Pseudogene of AT3G59455 | chr5:15830985-15831271
REVERSE LENGTH=287
Length=287
Score = 302 bits (163), Expect = 3e-81
Identities = 249/290 (86%), Gaps = 8/290 (3%)
Strand=Plus/Plus
Query 21 ATGAAGATCAATCCATTGATGTTCATCGCCTTGATGGTACTCTTGACATCATTCCCCACT 80
||||||| || | |||||||||||| | ||||| | ||||||||||||||||||||||||
Sbjct 1 ATGAAGAACATTTCATTGATGTTCACCACCTTGGTCGTACTCTTGACATCATTCCCCACT 60
Query 81 CCAACGCTCTCTTATTGCAAAGAGTCACTTTATTTATGTATACAACATATGAAAGATAGA 140
|||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |
Sbjct 61 CCAACGCTCTCTTATTGCAAAGAGTCACTTCATTTATGCCTGCAACATATGAAAGATATA 120
Query 141 GCCACG-TGGCTGAAATGTTGTGATAGACTA--ATAGTAGCAGGACCATGTATGTGTAAG 197
||||| ||| | |||||||||||||||| ||| || ||||||||||||||||||||
Sbjct 121 CCCACGTTGG-ACAGATGTTGTGATAGACTAGTATAATACCAGGACCATGTATGTGTAAG 179
Query 198 TATATTAAAGATCCTGTGCAAAAGAAAGATGCTTACCGTCTTATGGCTT-CTTGTGGAAA 256
||||||||||||||||||||| |||| | ||||| |||||||| | || |||||||| |
Sbjct 180 TATATTAAAGATCCTGTGCAATGGAAACAAGCTTATCGTCTTATTG-TTGCTTGTGGAGA 238
Query 257 -GACTATTCCTATAAATCAGGATCTCAGGAAATATTACAAGTGTGGCTAA 305
| | ||||||||||||| ||||||| | |||| |||||||||||||
Sbjct 239 TGG-TGTTCCTATAAATCAAGATCTCAAGTCTTATTTCAAGTGTGGCTAA 287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23409112502
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5