BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486406
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59390.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1546 0.0
> AT3G59390.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2054 (InterPro:IPR019352);
Has 35333 Blast hits to 34131 proteins in 2444
species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi
- 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink). | chr3:21946118-21948318 FORWARD LENGTH=1016
Length=1016
Score = 1546 bits (837), Expect = 0.0
Identities = 924/966 (96%), Gaps = 6/966 (1%)
Strand=Plus/Plus
Query 1 CGTGATTTGGTCGAAAGATTTGTTCTTTCTCCGACAAG-A--ATGTCCACATCTGGGTTT 57
|||||||||||||||||||| ||||||||||||||||| | ||||||| ||||||||||
Sbjct 1 CGTGATTTGGTCGAAAGATTGGTTCTTTCTCCGACAAGAATTATGTCCAAATCTGGGTTT 60
Query 58 AG--T-CTGTTCCTCGCTGTTCTACATCTCATGGGTTTCTTGTTTCCGTTGAGAGTTTCT 114
|| | |||||||||| | |||||| | ||||||||||||| ||||||||||||||||||
Sbjct 61 AGTCTGCTGTTCCTCGTTCTTCTACTTATCATGGGTTTCTTATTTCCGTTGAGAGTTTCT 120
Query 115 GCAATTAGGAAGGATATCGGATTTTTGGAAGAGCGGAGTTGCAGAACAACTGTCCAAGGA 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCAATTAGGAAGGATATCGGATTTTTGGAAGAGCGGAGTTGCAGAACAACTGTCCAAGGA 180
Query 175 AGATACTTGATCTCGGATGATGAAGGCAATGTGTGTGATGCTCTGTCATTGGAATCTCGA 234
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 AGATACTTGATCTCCGATGATGAAGGCAATGTGTGTGATGCTTTGTCATTGGAATCTCGA 240
Query 235 ACCCGTTGTTGTCCATGGAAAGGAGAAAGATTCTCTTGTCATGGATGCAACCTCCTTTCA 294
|| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 241 ACTCGTTGTTGTCCATGGAAAGGAGAAAGATTCTCTTGTCATGGATGCAACATACTTTCA 300
Query 295 CAATGCTGCAACTCTTATGAATTTTGCGTTTCTTGCTGCTTAAATCCGTCTCGGACGCTT 354
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 301 CAATGCTGCAACTCTTATGAATTTTGCGTTTCTTGCTGCTTGAATCCGTCTCAGACGCTT 360
Query 355 CTTGAGAAGGTGGTTAAGGTAAAAGTTGCAAAGCCGGATACAGCAGGGACTTACAAGAGT 414
|||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||
Sbjct 361 CTTGAGAAGGTGGTTAAGGTCAAAGTTGCAAAGCCGGCTACATCAGGGACTTACAAGAGT 420
Query 415 GTATTTGATTTTTGTGCTGGGAGATGCCGCCATAACTCTGAGAGTGTGGTTCATGAAAAT 474
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 421 GTATTTGATTTTTGTGCCGGGAGATGCCGGCATAACTCTGAGAGTGTGGTTCACGAAAAT 480
Query 475 GCTTACCACAGCGAGTTTCACCATTGTTTTTCTCTGACATCAAATGCTTCAGGTGCTAAT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCTTACCACAGCGAGTTTCACCATTGTTTTTCTCTGACATCAAATGCTTCAGGTGCTAAT 540
Query 535 CTTACACAAATTGAAACAAGACTTCTTGGCATTGACGTTATTGTTGGAAGTCAAGGAGAT 594
||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 541 CTTACACAAGTTGAAACAAGACTTCTTGGTATTGACGTTATTGTCGGAAGTCAAGGAGAT 600
Query 595 TCATGCGATGCAGTTTGCAAATCACGTGGACAATTGTGTGTGATGAATAAACTCTCACTT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCATGCGATGCAGTTTGCAAATCACGTGGACAATTGTGTGTGATGAATAAACTCTCACTT 660
Query 655 CTAAACCAATGTGACGTTATGAAAAGATACATGACCTGCAAAGGGTCGTGTTTAGCAAGT 714
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 661 CTAAACCAGTGTGACGTTATGAAAAGATACATGAACTGCAAAGGGTCGTGTTTAGCAAGT 720
Query 715 GCCGGGGCTGACCAACCTGCCGAAGTTGTCGAAGATGCACCCAGAGATTTGTATCCTGGC 774
|||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||
Sbjct 721 GCCGGGGCTGACCAACCTGCTGAAGTTGTCGAAGATGCGCCGAGAGATTTGTATCCAGGC 780
Query 775 GCGTGTTTGTATACCCGGACACAATCAATGCTTTCCTGTGACGGTTCACACCAACACACC 834
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 781 GCGTGTTTGTATACCCGGACACAATCATTGCTTTCCTGTGACGGTTCACACCAACACACC 840
Query 835 CGACGACTCTGCCCATGTGCCTAGAAACTAGTCAGTATTAAGACTTATGACATACTTTTT 894
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 841 CGACGACTCTGCCCATGTGCCTAGAAGCTAGTCAGTATTAAGACTTATGCCATACTTTTT 900
Query 895 TCCGCCTTCTTGTAGCAGTTTTAGAATGCTCTGATCATGTAATTGTCTCATGGTGAAAGA 954
||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 901 TCCTCCTTATTGTAGCAGTTTTAGAATGCTCTGATCATGTAATTTTCTCATGGTGAAAGA 960
Query 955 AAACAT 960
| ||||
Sbjct 961 ACACAT 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46968927445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5