BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486409
Length=3363
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59420.1 | Symbols: ACR4, CR4 | crinkly4 | chr3:21959647-219... 5332 0.0
> AT3G59420.1 | Symbols: ACR4, CR4 | crinkly4 | chr3:21959647-21963041
REVERSE LENGTH=3395
Length=3395
Score = 5332 bits (2887), Expect = 0.0
Identities = 3218/3375 (95%), Gaps = 34/3375 (1%)
Strand=Plus/Plus
Query 1 CTCTAGCTCCTACTTTCATTACCCAATTTCTCTCTCTCAACACTTCTTTAGTCGGCAAAA 60
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 1 CTCTAGCTCCTACTTTCATTACCCAA-TT-ACTCTCTCAACACTTCTTTAGTCGGCAGAA 58
Query 61 AACTTTTGCGAGAtttttttttGAGAAGCTTAGCTTTAAAGGGTCTTT-GAGGATGTTAT 119
|| || ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 59 AA-------GA-TTTTTTTTTTGAGAAGCTTAGCTTCAAAGGGTCTTTGGAGGATGTTAT 110
Query 120 GATGTTGTTACCTTGCGGTCTGAGATCTCAAAGGGGTAAGTGTTTTTGTCTTCGTTGCAG 179
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 111 GATGTTGTTACCTTGCGGTCTGAGATCTGAAAGGAGTAAGTGTTTTTGTTTTCGTTGCAG 170
Query 180 AAGAACAGAGAGACAAGAGGTTCTTCTTTGACATGGTTGTCTGAATTTGCCACTTCAAGA 239
||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||
Sbjct 171 AAGAACAGAGAGACAAGAGGTCCTTCTTTGACTTGGTTGTCTGAATTTTCCACTTCAAGA 230
Query 240 TTGTCTCCTACATCTTCGGAGGTTGTCTGGCTGACGAGTCCTCTGTTTCTTCGACACTAA 299
|||| |||||||||| ||||| |||||||||||||||||||| |||||||||| ||||||
Sbjct 231 TTGTTTCCTACATCTCCGGAGATTGTCTGGCTGACGAGTCCTTTGTTTCTTCGTCACTAA 290
Query 300 TTCAGCTCTCATTGTTTGAAATTTCAATTCTTTTAGTTATTGCATGCCCTTGATTGCAGT 359
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 291 TTCAGCTCTCATTGTTTGTAATTTCTATTCTTTTAGTTATTGCATGCCCTTGATTGCAGT 350
Query 360 TTCACAG-TTTTGTGAACTTCTG-GTGACTCCTTTGCTATTTACCAATCAAGGGTCTCAC 417
| ||||| ||||||||||||| | ||||||| |||||||||||| ||||||||| |||
Sbjct 351 TCCACAGTTTTTGTGAACTTC-GTGTGACTCGTTTGCTATTTACTAATCAAGGG--TCAT 407
Query 418 ACTCTTAGTCAATCTATGGAATGTCTCTGAAAGTGAAGACAGTAGCTAAGAAGCGTGTGG 477
||||||||||| ||| ||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 408 ACTCTTAGTCACTCTGTGGAATGTCTCAGAAAGTGAAGACAGTAACTAAGAAGCGTGTGT 467
Query 478 GTTGACTTTGAAAAGAATGAGAATGTTCGAAAGGAGAGCAAGGGAATGGATTCTCCTTGT 537
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 468 GTTGACTTTGAAAAGAATGAGAATGTTCGAAACGAGAGCAAGGGAATGGATTCTCCTTGT 527
Query 538 AAAGCTTGTGCTTTTCACTAGTATATGGCAGCTTGCTTCAGCTCTTGGTTCAATGTCCTC 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 528 AAAGCTTGTGCTTTTCACTAGTATATGGCAGCTTGCTTCAGCTCTTGGTTCAATGTCTTC 587
Query 598 AATTGCAATTTCCTATGGAGAAGGTGGTTCTGTATTCTGTGGTCTGAAGTCTGATGGATC 657
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 588 AATTGCAATTTCTTATGGAGAAGGTGGTTCTGTATTCTGTGGTCTGAAGTCTGATGGGTC 647
Query 658 TCATCTTGTGGTTTGCTACGGATCGAACTCAGCGATCCTCTATGGGACTCCTGGTCATCT 717
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 648 TCATCTTGTGGTTTGCTACGGATCGAACTCAGCAATCCTCTATGGGACTCCTGGTCATCT 707
Query 718 CCAGTTCATCGGTTTAACGGGTGGAGATGGGTTTATGTGTGGGCTTCTGATGCTATCTCA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 CCAGTTCATCGGTTTAACGGGTGGAGATGGGTTTATGTGTGGGCTTCTGATGCTATCTCA 767
Query 778 TCAGCCTTATTGTTGGGGAAACAGTGCATTTATTCAAATGGGAGTTCCTCAACCAATGAC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 TCAGCCTTATTGTTGGGGAAACAGTGCATTTATTCAAATGGGAGTTCCTCAACCAATGAC 827
Query 838 CAAAGGATCTGAGTACTTAGAAGTTAGTGCTGGCGATTACCATCTCTGTGGTTTGAGGAA 897
||||||| ||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 828 CAAAGGAGCTGAGTATTTAGAAGTTAGTGCTGGTGATTACCATCTTTGTGGTTTGAGGAA 887
Query 898 GCCAATAGTGGGAAGAAGAAA-AGGCAGCAACATT-TCTTCTTCTTCCCTTGTTGATTGT 955
||||||||||||||||||||| | |||||||||| | ||| ||||| ||||||||||||
Sbjct 888 GCCAATAGTGGGAAGAAGAAAGAA-CAGCAACATTAT-TTCCTCTTCTCTTGTTGATTGT 945
Query 956 TGGGGTTACAATATGACAAGAAACTTTGTCTTTGATAAGAAGTTATATTCACTCTCGGCT 1015
||||||||||||||||||||||||||||||||||||||| ||||| |||| || ||||||
Sbjct 946 TGGGGTTACAATATGACAAGAAACTTTGTCTTTGATAAGCAGTTACATTCGCTTTCGGCT 1005
Query 1016 GGCTCGGAATTCAACTGCGCGCTGTCCTCTAAAGACAAGTCTGTTTTCTGTTGGGGAGAC 1075
|| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1006 GGTTCGGAGTTCAACTGCGCGCTGTCCTCTAAAGATAAGTCGGTTTTCTGTTGGGGAGAT 1065
Query 1076 GAGAATAGCAGTCAAGTAATCAGTTTAATCCCAAAGGAAACAAAGTTTCAGAAAATTGCA 1135
|||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1066 GAGAATAGTAGTCAAGTAATCAGTTTAATCCCCAAGGAAAAAAAGTTTCAGAAAATTGCA 1125
Query 1136 GCTGGTGGATACCATGTCTGTGGCATTCTTGACGGGTTGGAATCGCGAGTGCTCTGTTGG 1195
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1126 GCTGGTGGATACCATGTTTGTGGCATTCTTGACGGGTTGGAATCGCGAGTGCTATGTTGG 1185
Query 1196 GGAAAGAGCTTAGAGTTCGAAGAGGAGATCACAGGGACTTCTACGGAAGAACAGATTCTT 1255
||||||||||||||||||||||||||| | |||||||||||||| |||||| ||||||||
Sbjct 1186 GGAAAGAGCTTAGAGTTCGAAGAGGAGGTTACAGGGACTTCTACAGAAGAAAAGATTCTT 1245
Query 1256 GATTTACCGCCAAAAGAGCCACTCTTGGCAGTGGTAGGTGGGAAGTTTTATGCTTGTGGA 1315
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1246 GATTTACCACCAAAAGAGCCACTCTTAGCAGTGGTAGGTGGGAAGTTTTATGCTTGTGGA 1305
Query 1316 ATCAAACGCTATGATCATAGTGCGGTTTGTTGGGGTTTTTTCGTGAACCGGAGTACACCT 1375
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1306 ATCAAACGCTATGATCATAGTGCGGTCTGTTGGGGTTTTTTCGTGAACAGGAGTACACCT 1365
Query 1376 GCTCCTAAAGGTATAGGCTTTTATGATCTTGCAGCGGGGAATTACTTCACTTGCGGAGTT 1435
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 GCTCCTACAGGTATCGGCTTTTATGATCTTGCAGCGGGGAATTACTTCACTTGCGGAGTT 1425
Query 1436 CTCTCAGGGACTTCTATGTCACCGGTCTGTTGGGGTCTTGGTTTCCCTGCTTCTATCCCT 1495
||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1426 CTCACAGGGACTTCTATGTCACCTGTTTGTTGGGGTCTTGGTTTCCCTGCTTCTATCCCT 1485
Query 1496 TTAGCTGTCTCACCAGGACTCTGTATAGACACTCCTTGTCCACCAGGAACTCATGAACTC 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 TTAGCTGTCTCACCAGGACTCTGTATAGACACTCCTTGTCCACCAGGAACTCATGAACTC 1545
Query 1556 AGTAACCAA-AACAACTCGCCTTGCAAAGTGACTGGCTCTCACATTTGCTTGCCCTGTAG 1614
||||||||| || ||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1546 AGTAACCAAGAA-AACTCGCCTTGCAAATTTACTGGCTCTCACATTTGCTTGCCCTGTAG 1604
Query 1615 TACCAGTTGCCCTCCTGGAATGTATCAGAAAAGCGAATGCACAGAGAGATCTGATCAAGT 1674
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1605 CACCAGTTGCCCTCCTGGAATGTATCAGAAAAGCGTATGCACAGAGAGATCTGATCAAGT 1664
Query 1675 TTGTGCTTATAACTGCTCGAGTTGTTCCTCACCTGACTGCTCCTCAAACTGCTCTTCTTC 1734
||||| ||| |||||||| ||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1665 TTGTGTTTACAACTGCTCCAGTTGTTCCTCACATGATTGCTCCTCAAACTGCTCTTCTTC 1724
Query 1735 GTCTACCAGTGGAGGCAAAGAAAAAGGAAAGTTTTGGTCACTGCAGCTACCTATTGCAAC 1794
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 GGCTACCAGTGGAGGCAAGGAAAAAGGAAAGTTTTGGTCACTGCAGCTACCTATTGCAAC 1784
Query 1795 TGCAGAGATTGGATTTGCTCTGTTTTTGGTAGCAGTTGTCTCGATAACAGCGGCTTTATA 1854
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1785 TGCAGAGATTGGATTTGCTCTATTTTTGGTAGCGGTTGTCTCGATAACAGCGGCTTTATA 1844
Query 1855 CATTAGGTACAGATTGAGGAATTGTAGGTGCTCAGAAAATGATGCAAGGTCTTCTAAAGA 1914
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1845 CATTAGGTACAGATTGAGGAATTGTAGGTGCTCAGAAAATGATACAAGGTCTTCTAAAGA 1904
Query 1915 TTCAGCCTTTATGAAAGATAATGGCAAAATTCGTCCGGATCTCGATGAGCTACAAAAGCG 1974
||||||||||| |||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 1905 TTCAGCCTTTACGAAAGATAATGGCAAAATCCGTCCGGATCTTGATGAGCTGCAAAAGCG 1964
Query 1975 CAGAAGGGCTCGAGTTTTCACTTATGAGGAACTTGAAAAAGCCGCCGATGGATTCAAAGA 2034
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1965 CAGAAGGGCTAGAGTTTTCACTTATGAGGAACTTGAAAAAGCCGCTGATGGATTCAAAGA 2024
Query 2035 AGAATCAATAGTGGGGAAAGGGAGTTTCTCATGTGTGTACAAAGGAGTACTGAGAGATGG 2094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2025 AGAATCAATAGTGGGGAAAGGGAGTTTCTCATGTGTGTACAAAGGAGTACTGAGAGATGG 2084
Query 2095 AACCACTGTTGCAGTGAAGAAAGCGATAATGTCATCAGACAAACAGAAGAATTCAAATGA 2154
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2085 AACCACTGTTGCAGTGAAGAGAGCGATAATGTCATCAGACAAACAGAAGAATTCAAATGA 2144
Query 2155 GTTTCGCACGGAGCTGGATCTGTTATCAAGACTCAACCATGCTCATCTTCTTAGCCTTCT 2214
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2145 GTTTCGCACGGAGCTTGATCTGTTATCAAGACTCAACCATGCTCATCTTCTTAGCCTTCT 2204
Query 2215 TGGATACTGTGAAGAAGGTGGAGAAAGGCTTCTGGTTTATGAGTTTATGGCACACGGCTC 2274
|||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct 2205 TGGATACTGTGAAGAATGTGGAGAAAGGCTTTTAGTTTATGAGTTTATGGCACACGGCTC 2264
Query 2275 ACTGCACAACCATCTTCATGGAAAGAACAAGGCCTTGAAAGAGCAACTAGATTGGGTCAA 2334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2265 ACTGCACAACCATCTTCATGGAAAGAACAAGGCCTTGAAAGAGCAACTAGATTGGGTCAA 2324
Query 2335 ACGAGTAACGATTGCTGTCCAAGCTGCTAGAGGAATCGAATACTTGCACGGTTATGCTTG 2394
| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 2325 AAGAGTAACGATTGCTGTCCAAGCTGCTAGAGGAATCGAATACTTGCATGGTTACGCTTG 2384
Query 2395 CCCTCCCGTGATTCACCGGGATATTAAATCATCAAACATTCTTATAGATGAAGAACACAA 2454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2385 CCCTCCCGTGATTCACCGGGATATTAAATCATCAAACATTCTTATAGATGAAGAACACAA 2444
Query 2455 TGCTCGAGTAGCTGATTTTGGTCTCTCCTTACTTGGTCCTGTTGATAGCGGCTCTCCTTT 2514
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2445 TGCTCGAGTAGCTGATTTTGGTCTCTCCTTACTTGGTCCTGTCGATAGCGGCTCTCCTTT 2504
Query 2515 GGCAGAACTACCAGCAGGAACTCTCGGTTACCTTGATCCCGAGTACTATCGACTGCATTA 2574
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2505 GGCAGAACTACCAGCAGGAACTCTCGGTTACCTTGATCCCGAGTACTATCGACTTCACTA 2564
Query 2575 TCTCACAACCAAATCCGATGTCTACAGCTTTGGAGTCCTGCTTCTAGAGATCCTAAGTGG 2634
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 2565 TCTCACAACCAAATCCGATGTCTACAGCTTTGGAGTCCTGCTTCTCGAGATCCTAAGCGG 2624
Query 2635 AAGAAAAGCCATAGACATGCACTACGAAGAAGGGAACATAGTAGAATGGGCGGTTCCTTT 2694
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2625 AAGAAAAGCCATTGACATGCACTACGAAGAAGGGAACATAGTAGAATGGGCAGTTCCTTT 2684
Query 2695 GATCAAAGCTGGAGATATAAACGCACTCTTGGACCCGGTCTTGAAACATCCATCTGAAAT 2754
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2685 GATCAAAGCAGGAGATATAAACGCACTCTTGGACCCGGTCTTGAAACATCCATCTGAAAT 2744
Query 2755 CGAAGCTTTGAAAAGAATCGTGAGTGTGGCTTGCAAATGCGTGAGGATGAGAGGGAAAGA 2814
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2745 CGAAGCTTTGAAAAGAATCGTGAGTGTGGCTTGCAAATGCGTGAGAATGAGAGGGAAAGA 2804
Query 2815 TAGACCATCGATGGATAAAGTGACAACATCATTGGAACGAGCGCTTGCACAGCTAATGGG 2874
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2805 TAGACCATCAATGGATAAAGTGACAACAGCATTGGAACGAGCGCTTGCACAGCTAATGGG 2864
Query 2875 AAACCCAAGCAGTGAGCAGCCAATATTACCAACAGAAGTAGTGCTCGGGAGCAGCAGAAT 2934
|||||| |||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 2865 AAACCCGAGCAGTGAGCAGCCAATATTACCAACAGAAGTGGTTCTTGGGAGCAGCAGAAT 2924
Query 2935 GCACAAGAAGTCATGGAGGATCGGTTCAAAAGGGTCTGGTTCCGAGAATACGGAATTTAG 2994
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||
Sbjct 2925 GCACAAGAAGTCATGGAGGATCGGTTCAAAAAGGTCTGGTTCCGAGAACACGGAATTCAG 2984
Query 2995 AGGCGGATCATGGATAACTTTCCCGAGCGTGACATCATCGCAGAGGCG-AAAGTCGTCGG 3053
|||||||||||||||||| ||||||||||||||||||||||||||| | ||| || ||||
Sbjct 2985 AGGCGGATCATGGATAACATTCCCGAGCGTGACATCATCGCAGAGGAGGAAA-TCATCGG 3043
Query 3054 CATCTGAAGGAGATGTAGCGGAGGAGGAGGATG--GG-AGGAAACAACAAGAAGCATTGA 3110
|||||||||||||||| || ||||||||||||| || ||||| ||||||||||||||||
Sbjct 3044 CATCTGAAGGAGATGTCGCAGAGGAGGAGGATGAAGGGAGGAAGCAACAAGAAGCATTGA 3103
Query 3111 GGAGTCTTGAGGAAGAGATAGGGCCAGCTTCTCCTGGACAGAGCTTGTTCTTGCATCATA 3170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3104 GGAGTCTTGAGGAAGAGATAGGGCCAGCTTCTCCTGGACAGAGCTTGTTCTTGCATCATA 3163
Query 3171 ATTTCTGAAAACAAGTGT-TGTTTTCTCAAGTCTTTAGTAACCAATGACATATATAAGTA 3229
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
Sbjct 3164 ATTTCTGAAAACAAGTGTCTGTTTTCTCAAGTCTTTAGTAACTAATGACATATATAAG-A 3222
Query 3230 AGATATTTACTCTGATGTATAATGTGTTCCTTAAGGCAGGAATGTAACAAAGAGGCAGAG 3289
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3223 T-AT-TTTACTCTGATGTATAATGTGTTCCTTAAGGCAGGAAAGTAACAAAGAGGCAGAG 3280
Query 3290 AGACTCTCTTCAAGGAAGAATGTATCAAGtttttttt-CAACTAATTATTACTAAGTTCT 3348
||||||| | |||| |||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 3281 AGACTCT-T-CAAGCAAGAATGTATCAAGTTTTTTTTTCAACTAATTATTACAAAGTTCT 3338
Query 3349 TTTGTAGAAGTGAAC 3363
|||||| ||||||||
Sbjct 3339 TTTGTATAAGTGAAC 3353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 167356921848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5