BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486411
Length=746
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59440.1 | Symbols: | Calcium-binding EF-hand family protei... 1016 0.0
> AT3G59440.1 | Symbols: | Calcium-binding EF-hand family protein
| chr3:21970355-21971122 FORWARD LENGTH=768
Length=768
Score = 1016 bits (550), Expect = 0.0
Identities = 654/704 (93%), Gaps = 8/704 (1%)
Strand=Plus/Plus
Query 1 AAGTTCCTCTGTATAACAAACAATTGAAAACTCTCTCTCCATCTCTGTTCTCAACAAAGG 60
||||||||||||||| ||||| || |||| |||||||||| ||||||||||||||||
Sbjct 1 AAGTTCCTCTGTATACCAAACTATCAAAAAAACTCTCTCCATTTCTGTTCTCAACAAAGC 60
Query 61 CAAGAGTTATGGTGAGAGTCTTTCTTCCCTACAACCTCTTTAACTCCTTTCTTCTTTGTT 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 CAAGAGTTATGGTGAGAGTCTTTCTTCTCTACAACCTCTTTAACTCCTTTCTTCTTTGTT 120
Query 121 TAGTTCCCAAGAAGCTTAGAGTTTTCTGCCCTCCTTCTTGGTACATCGACGACAAGAACC 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 TAGTTCCCAAGAAGCTTAGAGTTTTCTTCCCTCCTTCTTGGTACATCGACGACAAGAACC 180
Query 181 CACCACAGTCTGAATCCCCGGGGAGAA--G-AGATCCGGTGGATCTAAAACGAGTGTTTC 237
|||||| | ||| || ||| || | | |||||| |||||||||||||||||||
Sbjct 181 CACCACCGCCTG-AT-GAATCGGA-AACTGAATCTCCGGTAGATCTAAAACGAGTGTTTC 237
Query 238 AGATGTTCGACAAGAATGGAGACGGACGCATCACAAAGGAAGAGCTAAACGATTCTCTAG 297
|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 238 AGATGTTCGACAAGAACGGAGATGGACGCATCACAAAGGAAGAGCTGAACGATTCTCTAG 297
Query 298 AGAATCTAGGAATCTTTATGCCTGACAAAGATCTGGTCCAGATGATCCAAAAGATGGATG 357
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 298 AGAATCTAGGAATCTTTATGCCTGACAAAGATCTGATCCAGATGATCCAGAAGATGGATG 357
Query 358 CAAATGGAGATGGGA-TCGTAGACATAAAAGAGTTTGAGTCTCTTTACGGTTCGATTGTG 416
|||||||||||||| | ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 358 CAAATGGAGATGGGTGT-GTAGACATAAACGAGTTTGAGTCTCTTTATGGTTCGATTGTG 416
Query 417 GAGGAAAAGGAGGAAGAGGACATGAGAGATGCGTTCAATGTGTTTGATCAAGACGGTGAT 476
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 417 GAGGAAAAGGAGGAAGGGGACATGAGAGACGCGTTCAATGTGTTTGATCAAGACGGTGAT 476
Query 477 GGGTTTATCACTGTTGAGGAGTTGAAGTCTGTGATGGCTTCCTTGGGGCTCAAGCAAGGT 536
|| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 477 GGATTTATCACTGTTGAGGAGTTGAATTCTGTGATGACTTCCTTGGGGCTCAAGCAAGGT 536
Query 537 AAAACCCTAGAGTGTTGTAAAGAGATGATTAAGCAAGTGGATGAAGATGGAGATGGTAGA 596
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 537 AAAACCCTAGAATGTTGTAAAGAGATGATTATGCAAGTGGATGAAGATGGAGATGGTAGA 596
Query 597 GTCAATTACATGGAGTTCCTTCAGATGATGAAAAGTGGTGACTTTAGCAATAGATCATGA 656
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GTCAATTACAAGGAATTCCTTCAGATGATGAAAAGTGGTGACTTTAGCAATAGATCATGA 656
Query 657 GTTGATTCTAACATGGAGAAGAAGGACCAATCTATCTACATCTA 700
||| ||||| ||||||||||||||||||||| ||| ||| ||||
Sbjct 657 GTTTATTCTGACATGGAGAAGAAGGACCAATATATTTACCTCTA 700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36218819987
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5