BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486413
Length=1189
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59480.1 | Symbols: | pfkB-like carbohydrate kinase family ... 1783 0.0
> AT3G59480.1 | Symbols: | pfkB-like carbohydrate kinase family
protein | chr3:21983021-21984598 FORWARD LENGTH=1221
Length=1221
Score = 1783 bits (965), Expect = 0.0
Identities = 1109/1177 (94%), Gaps = 15/1177 (1%)
Strand=Plus/Plus
Query 17 Atctctctct-ctctGCTCAATCTTAATCGTCCGATCAAAACACTCCGACTAAAAATGGC 75
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 28 ATCTCTCTCTATTTTGCTCAATCTTAATCGTCCGATCAAAACACTCCGACTAAAAATGGC 87
Query 76 TGCATCCAACGGTGAGAAAAGCTTGATCGTGAGTTTCGGTGAAATGCTCATCGATTTCGT 135
|||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 88 TGCATCTAACGGCGAGAAAAGCTTGATCGTGAGCTTCGGTGAAATGCTCATCGATTTCGT 147
Query 136 CCCAACTGTCTCCGGCGTATCCCTCGCCGACGCTCCTGGCTTCATCAAAGCCCCTGGTGG 195
|||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 148 CCCAACCGTCTCCGGTGTATCCCTCGCCGATGCTCCTGGCTTCATCAAAGCCCCCGGTGG 207
Query 196 TGCACCTGCCAACGTTGCTATCGCCATATCCCGTCTTGGCGGTCGTGCCGCTTTCGTCGG 255
|||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||
Sbjct 208 TGCACCTGCCAACGTTGCCATCGCCATTTCCCGTCTAGGCGGTCGTGCCGCTTTCGTTGG 267
Query 256 AAAACTTGGTGATGACGAGTTCGGTCACATGCTCGCCGGAATCTTGAAACAGAACGGCGT 315
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 268 AAAACTCGGTGACGACGAGTTCGGTCACATGCTCGCCGGAATCTTGAAACAGAACGGTGT 327
Query 316 CTCTGCCGAAGGTATCAATTTCGACACCGGAGCCAGGACTGCACTTGCGTTCGTGACACT 375
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 328 CTCTGCTGAAGGTATCAATTTCGACACTGGAGCCAGGACTGCACTTGCGTTCGTGACACT 387
Query 376 AAAATCTGACGGAGAACGTGAGTTCATGTTCTACCGGAACCCTAGTGCCGATATGCTCCT 435
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 AAGATCTGATGGAGAACGTGAGTTCATGTTCTACCGGAACCCTAGTGCCGATATGCTCCT 447
Query 436 CCGTCCCGACGAACTCAATCTTGATCTCATCAGATCTGCTAAGGTGTTCCACTACGGATC 495
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 448 CCGTCCCGACGAGCTCAATCTTGATGTCATCAGATCTGCTAAGGTGTTCCACTACGGATC 507
Query 496 CATAAGCTTGATCGTTGAGCCATGTCGATCTGCTCACCTGAAAGCCATGGAGGTGGCTAA 555
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 508 CATAAGCTTGATCGTTGAGCCATGTCGATCTGCTCACTTGAAAGCCATGGAGGTGGCTAA 567
Query 556 AGAAGCTGGTGCGTTGCTCTCTTATGATCCGAACTTGAGGCTTCCTTTGTGGCCCTCCAA 615
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 568 GGAAGCTGGTGCGTTGCTTTCATATGATCCGAACTTGAGGCTTCCTTTGTGGCCCTCGAA 627
Query 616 GGAGGAGGCTCAGAAGCAGATTCTTAGCATCTGGGACAAAGCTGAAGTGATCAAAGTCAG 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 GGAGGAGGCTCAGAAGCAGATTCTTAGCATCTGGGACAAAGCTGAAGTGATCAAAGTCAG 687
Query 676 CGATGAAGAGCTTATGTTCTTGACTGGATCTGATAAGGTTGATGACGAGACTGCTTTGTC 735
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 688 CGATGAAGAGCTTATGTTCTTGACTGGATCTGATAAGGTTGATGATGAGACTGCTTTGTC 747
Query 736 TCTGTGGCACTCTAATCTGAAACTTCTTTTGGTCACTCTAGGTGATAAGGGTTGTAGATA 795
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 748 TCTGTGGCACTCTAATCTGAAACTTCTCTTGGTCACTCTAGGTGAAAAGGGTTGTAGATA 807
Query 796 CTACACAAAGAGCTTCCGTGGATCTGTTGATCCTTTCCATGTGAACGCAGTGGATACAAC 855
|||||| |||||||||||||||||||||||||| ||||||||| | ||||| ||||||||
Sbjct 808 CTACACCAAGAGCTTCCGTGGATCTGTTGATCCCTTCCATGTGGATGCAGTAGATACAAC 867
Query 856 AGGTGCTGGTGATTCATATGTTGGTGCCTTGCTTTGCAAGATTGTTGATGACCGTGCTGT 915
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 868 TGGTGCTGGTGATTCATTTGTTGGTGCATTGCTTTGCAAGATTGTTGATGACCGTGCTGT 927
Query 916 GCTTGAGGACGAAGCTCGTCTGAGAGAAGTGCTTAGG-TATGCAAATGCTTGTGGAGCCA 974
|||||||||||||||||| |||||||||||||||||| | ||| ||||||||||||||||
Sbjct 928 GCTTGAGGACGAAGCTCGGCTGAGAGAAGTGCTTAGGCT-TGCGAATGCTTGTGGAGCCA 986
Query 975 TCACAACAACAAAGAAAGGAGCAATTCCAGCTCTCCCTACAGAGTCTGAAGTTCAGAGTC 1034
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 987 TCACAACAACAAAGAAAGGAGCTATTCCAGCTCTCCCTACAGAGTCTGAAGTTCAGAGCC 1046
Query 1035 TCCTGAAAGGAAACTGATTAGCA-AATTGTCTGGATTTTTAGGATTTCACGTTTTAGTTT 1093
||||||||||||||||||| || ||| |||||||||||||||| |||| |||||| ||
Sbjct 1047 TCCTGAAAGGAAACTGATTT-CACAAT-GTCTGGATTTTTAGGACTTCAAGTTTTACCTT 1104
Query 1094 CTTTGTTGGCtttttttttt-tGTTTCTTCTGCTTTTCGCTCTGTGTTCTTGTACCAGAG 1152
|| |||||||| |||||| | |||| |||||||| |||||||||||||||| ||
Sbjct 1105 -TTC-TTGGCTTTGTTTTTTAT-TTTCCCCTGCTTTTGGCTCTGTGTTCTTGTA---GA- 1157
Query 1153 AACCGTTCTATTCTATTATGAATCTCGTTTTATTCCA 1189
| |||||||||||| ||||||||||||||||||||||
Sbjct 1158 A-CCGTTCTATTCTGTTATGAATCTCGTTTTATTCCA 1193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58383233835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5