BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486415
Length=908
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59490.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1382 0.0
> AT3G59490.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; Has 30201 Blast hits to 17322 proteins in 780
species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink). | chr3:21984596-21986351 REVERSE LENGTH=1035
Length=1035
Score = 1382 bits (748), Expect = 0.0
Identities = 867/922 (94%), Gaps = 17/922 (2%)
Strand=Plus/Plus
Query 1 AGAAGAAGAAAGCTTCAATTTTTCTGCGAATATGGAGGTTCCAAGCTCTGAGGAACTACT 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 AGAAGAAGAAAGCTCCAATTTTTCTGCGAATATGGAGGTTCCAAGCTCTGAGGAACTACT 118
Query 61 TCAGTTTCTGAGCTCTTGTCTCTCTCAGATCAAATGGCGACTCAAG-GTCACTTCCAAAC 119
|||||||||||| ||||| |||||||||||||||||| |||||||| | || ||||||||
Sbjct 119 TCAGTTTCTGAGTTCTTGCCTCTCTCAGATCAAATGGAGACTCAAGAG-CAATTCCAAAC 177
Query 120 GCCGCCTCGAAATAGATGTTCTGGCATTATGCACGGGAATGAGACCAGTTGTGATGATTG 179
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 178 GCCGTCTCGAAATAGATGTTCTGGCATTATGCACAGGAATGAGACCAGTTGTGATGATTG 237
Query 180 ACTATGGTGGAAAGATGCCTGAGCTACAGAATCGCTTGCTATCACTTCTTGAGCTTATCC 239
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 238 ACTATGGTGGAAAGATGCCTGAGCTACAGAATCGTTTGCTGTCACTTCTTGAGCTCATCC 297
Query 240 GAGAGGGTTTACCAGTTTTCAAAGATCTCAAGGTTATGGTTATAGAGGATATGATATACC 299
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 298 GAGAGGGTTTACCAGTTTTTAAAGATCTGAAGGTTATGGTTATAGAGGATATGATATACC 357
Query 300 TGATAAATGTAAGAAGACTGCCCAAGTTTGTAAGCTCCAGCTTGA-ATTCAGAACCCGAG 358
| |||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||
Sbjct 358 TCATAAATGTAAGAAGCCTGCCCAAGTTTGTAAGCTCCAGCTT-AGATTCAGAACCCGAG 416
Query 359 TTGTTCTTCATCGACTTGGAACAAGATCCTCCAAAGATGGTAGA-ACAAAGCAAGGAAAG 417
||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 417 TTGTTCTTCATTGACTTGGAACAAGATCCTCCAAAGATGGTA-ACACAAAGCAAGGAAAG 475
Query 418 CAATCTGGGGATGCAGCTTAGATCGATTCAGAAGCTATTCTCTTCGACATTTCCTTTAGA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CAATCTGGGGATGCAGCTTAGATCGATTCAGAAGCTATTCTCTTCGACATTTCCTTTAGA 535
Query 478 TGACAGCAATACTGGTTCCACTACAGCACTTAATGAGGCCAACTCTTCTCAGTCTTCTTT 537
|||||||||||||| | ||||||| | |||| |||||||||||||||||||| |||||||
Sbjct 536 TGACAGCAATACTGATACCACTACGGTACTTGATGAGGCCAACTCTTCTCAGACTTCTTT 595
Query 538 ATGCATTGATCTTAGTTGTTGTTTACAAGACACTAAAGTTACAATCCCAACCTTAAACGG 597
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 ATGCATTGATCTTAGCTGTTGTTTACAAGACACTAAAGTTACAATCCCAACCTTAAACGG 655
Query 598 ATGGCTGCTGGACTATCCAGTTGTGTATCTATTCGGCACAGACCACATAGAAGAAGCAAT 657
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 656 ATGGCTGCTGGACTATCCAGTTGTGTATCTATTTGGCACAGATCACATAGAAGAAGCAAT 715
Query 658 CTACAACCTATCTACCAAATCCCTTCGCATATTCAAAGTTCTAGTATGCAGTAATGCTAC 717
|||||||||||| ||||||||||| ||| |||||||||||||||||||||| |||| |||
Sbjct 716 CTACAACCTATCCACCAAATCCCTCCGCCTATTCAAAGTTCTAGTATGCAGGAATGGTAC 775
Query 718 CACCGAG--G-ACTCTCACTTAGAAGAGCTAACAAGT------G--CCATATGATCTGAG 766
||||||| | ||||||| |||||||||||||||||| | ||||||||||||||
Sbjct 776 CACCGAGAAGGACTCTCATTTAGAAGAGCTAACAAGTTTTTCAGTGCCATATGATCTGAG 835
Query 767 TATGGAAGGTAGCAAGGAAGTGTGGGCTGAAACATTTCTAGAGAGGATGAGTTCGAGGTG 826
|||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||
Sbjct 836 TATGGAAGGTAGCAAGGAAGTGTGGGCTGAAAAATTTCTGGAGAGGATGAGTTCAAGGTG 895
Query 827 GGAAGAATGCAAACACATTTGGAGATCATTGGATTTACAAGTTTCGGAATGTTATCCTCA 886
|||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 896 GGAAGAATGCAAACACATTTGGAGATCATTAGATTTGCAAGTTTCTGAATGTTATCCTCA 955
Query 887 AGCAATTGTTCTTTAAGGCTTT 908
||||||||| |||| |||||||
Sbjct 956 AGCAATTGTGCTTTGAGGCTTT 977
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44356751801
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5