BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486418
Length=1336
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59520.1 | Symbols: ATRBL13, RBL13 | RHOMBOID-like protein 1... 1476 0.0
> AT3G59520.1 | Symbols: ATRBL13, RBL13 | RHOMBOID-like protein
13 | chr3:21991826-21993263 FORWARD LENGTH=1438
Length=1438
Score = 1476 bits (799), Expect = 0.0
Identities = 986/1069 (92%), Gaps = 42/1069 (4%)
Strand=Plus/Plus
Query 1 CTGGAACAAGTTAGCGCGAACACGAAGAATCGAATCA-ATTCCCGAGGAAGAAAAGTTGT 59
||||||||||||||||||||||||| ||||||||||| | |||| ||||||||||| | |
Sbjct 1 CTGGAACAAGTTAGCGCGAACACGACGAATCGAATCAGAGTCCCAAGGAAGAAAAGATCT 60
Query 60 CTCTTTTATCCTTCT-G-G-------ATACTTTGGTCG-GTGGTTTTAGCTGAGAAGG-- 107
|||||| |||||||| | | |||||||||||| ||||||||||||| ||||
Sbjct 61 CTCTTTCATCCTTCTGGAGAATTCATATACTTTGGTCGATTGGTTTTAGCTGAAAAGGTC 120
Query 108 TC-AC--T--G-C---TT-TGAG-T-T-T-AATT-C-T-C-AG-AT--CTGTC-A----A 141
|| | | | | || | || | | | ||| | | | | || || || | |
Sbjct 121 TCTGCTTTGAGACTAATTCTCAGATCTGTGTATTGCTTGCTTGCATCGCTTTCTACCTCA 180
Query 142 TTGCCGATTTGGAGGAGGGAATTGAGCATTGGGTTTAGCTTCTTAAGTATGGGAAGACCC 201
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGTCGATTTGGAGGAGGGAATTGAGCATTGGGTTTAGCTTCTTAAGTATGGGAAGACCT 240
Query 202 TTGTTTTACGATATCATTGAGAAACCAGCAACGAGCTGCATCGTAACGATATGCAGTGTA 261
|||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 241 TTGTTTTATGATATCATTGAGAAACCAGCAACGAGCTGTATCGTAACGTTATGCAGTGTG 300
Query 262 ATCTGGTTTGTGATTCAGAAGAAGAGTATTGGGTACTCTCAAGTTGGATTGAGTTACGAG 321
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTTGGTTTGTGATTCAGAAGAAGAGTATTGGGTACTCTCAAGTTGGATTGAGTTACGAG 360
Query 322 ACTGCAATCGAAGGGCATTACTGGAGGATGATTACCTCTGCTTTATCACATATTAGCGTC 381
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 361 ACTGCAATCGAAGGGCATTACTGGAGGATGATTACATCTGCTTTATCACATATTAGTGTC 420
Query 382 TTGCATCTTGTGTTTAATATGAGTGCTTTATGGAGTCTTGGTGTTGTGGAACAGCTAGGT 441
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 TTGCATCTTGTGTTTAACATGAGTGCTTTATGGAGTCTTGGTGTTGTTGAACAGCTAGGT 480
Query 442 CATGTTGGTCTTGGCACTGCTTATTACCTTCATTACACTCTTGTTCTTGTTGTGTTCTCT 501
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CATGTAGGTCTTGGCACTGCTTATTACCTTCATTACACTCTTGTTCTTGTTGTGTTCTCT 540
Query 502 GGTGTTTTGGTTATTGGGATCTACCATTTGTTGATTGCTAGATTCAAGATTGATTATTTC 561
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 541 GGTGTTTTGGTTATTGGGATCTATCATTTGTTGATTGCTAGATTCAAGATTGATTATTTT 600
Query 562 CGGAGAGTTACAGCTGTTGGTTACTCTTGTGTTGTCTTTGGTTGGATGACGATTCTCTCT 621
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CGGCGAGTTACAGCTGTTGGTTACTCTTGTGTTGTCTTTGGTTGGATGACGATTCTCTCT 660
Query 622 ATGAAGCAACCTTCTTCAAAGCTGGATCTTTTTGGGCTTCTT-TCTCTTCCCATTAGCTT 680
| ||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 661 GTTAAGCAACCTTCTTCAAAGCTGAATCTTTTTGGGCTT-TTGTCTCTTCCCATTAGCTT 719
Query 681 TGCGCCATTCGAGTCACTCATTTTCACTTCGATTATTGTTCCACAAGCTAGTTTTCTGGG 740
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 TGCGCCATTCGAGTCACTCATTTTCACTTCGATCATTGTTCCACAAGCTAGTTTTCTGGG 779
Query 741 ACATTTGTCGGGAATCCTGGTTGGTTACGCCATTTCGTGGGGTTTGATTGGCGGGATGAA 800
|||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct 780 ACATTTGTCGGGAATCCTTGTTGGTTACGCCATTTCGTGGGGTCTGATTGGTGGGATGAA 839
Query 801 CAACTACTGGGCTCTTACAATGCTTGGTTGGATCGTAGTTGTCTTTGTTTTCAGTTTGAA 860
|||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 840 CAACTACTGGGCTCTTACTATGCTTGGTTGGATTGTAGTTGTCTTTGTGTTCAGTTTGAA 899
Query 861 GAAATCGGGTGCTTATGATTTCAGTTTTTTGGAGATCGAATCGCTTAGTGATGCTTCTTT 920
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 900 GAAATCGGGTGCTTATGATTTCAGTTTTTTGGAGATCGAATCGCTTACTGATGCTTCTTT 959
Query 921 ACCCTCAGTGCGGTTTATTGGAAATGGCCGGACCTTGCAAGCCAGTGCAGTTCCTCTTAG 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ACCCTCAGTGCGGTTTATTGGAAATGGCCGGACCTTGCAAGCCAGTGCAGTTCCTCTTAG 1019
Query 981 CGGAGTGGAAGTTGTCTGAATTTAGTTCATGGTCA-TATTGTATTTGGG 1028
||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1020 TGGAGTGGAAGTTGTCTGAATTCAGTTCATGGTCAATATTGTATTTGGG 1068
Score = 318 bits (172), Expect = 7e-86
Identities = 241/271 (89%), Gaps = 18/271 (7%)
Strand=Plus/Plus
Query 1048 AGTTCCAACCAAATTTAAGCGCTCCTCAAGGCTTGCTTGAACTGCATAATGTGGTGATTG 1107
||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 1136 AGTTCCAACCAAATTTAAGAGATCCTCAAGGCTTGCTTGAACTGCGTAATGTGGTGA--- 1192
Query 1108 GGGAAGGATTCCTCGTCTAATCAAGCTAGTGTTGTTTAGGCATCATTACAGATGAATGTG 1167
||||| | ||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1193 --AAAGGA-------T-TAAGCAAGCTAGTGTTGTTTAGGCATCATTACAGATGAATATG 1242
Query 1168 ACACAGTCAATTATTTTGTCATGTGATTGATGTATAGTTGCGAAAGGGTCCCATGTCTTA 1227
|||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1243 ACACAGTCAATTCTTTTGTCATGTGGTTGATGTATAGTTGCAAAAGGGTCCCATGTCTTA 1302
Query 1228 CCTAAAGATTCCATCCACTAGACATGTTTCCTCATTTGTGAGC-TTC-CCATTTATTTCA 1285
|||||||||||| |||||||||||||||||||||||||||| | ||| || |||||||||
Sbjct 1303 CCTAAAGATTCCGTCCACTAGACATGTTTCCTCATTTGTGA-CATTCTCC-TTTATTTCA 1360
Query 1286 -TATGAAAGCATGCTACCAACAGTCTTATAT 1315
|| ||||||||||||||||||||||| |||
Sbjct 1361 ATACGAAAGCATGCTACCAACAGTCTTGTAT 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65762713950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5