BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486421
Length=470
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59540.1 | Symbols: | Ribosomal L38e protein family | chr3:... 588 2e-167
AT2G43460.1 | Symbols: | Ribosomal L38e protein family | chr2:... 272 2e-72
> AT3G59540.1 | Symbols: | Ribosomal L38e protein family | chr3:21995677-21996836
REVERSE LENGTH=524
Length=524
Score = 588 bits (318), Expect = 2e-167
Identities = 348/362 (96%), Gaps = 4/362 (1%)
Strand=Plus/Plus
Query 1 AGGGTTCTCTATTTCTTCCAGACGCTGGGTTC-TGCCTTTTGCTGTTTGTTCTCTTGAGT 59
||| ||||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 1 AGGTTTCTCTATTTCTTTCAGACGCTGGGTTCTTG-CTTTTGCTGTTTGTTCTCTTGAGT 59
Query 60 GGAAGAAAGTTGCAGCCACAT-AACCAGATCCGACAATGCCGAAGCAAATCCATGAAATC 118
||||||||||||||||||| | || ||||||||||||||||||||||||||||||| |||
Sbjct 60 GGAAGAAAGTTGCAGCCAC-TAAATCAGATCCGACAATGCCGAAGCAAATCCATGAGATC 118
Query 119 AAGGACTTCCTTTTGACGGCGAGAAGGAAGGATGCAAGGTCTGTGAAGATCAAGAGAAGC 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AAGGACTTCCTTTTGACGGCGAGAAGGAAGGATGCAAGGTCTGTGAAGATCAAGAGAAGC 178
Query 179 AAGGACATTGTGAAGTTCAAGGTCAGGTGCTCAAGGTACCTCTACACACTATGTGTCTTC 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AAGGACATTGTGAAGTTCAAGGTCAGGTGCTCAAGGTACCTCTACACACTATGTGTCTTC 238
Query 239 GACCAAGAGAAGGCTGATAAGTTGAAGCAGTCTCTTCCTCCAGGTTTGAGTGTGCAAGAC 298
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GACCAAGAGAAGGCCGATAAGTTGAAGCAGTCTCTTCCTCCAGGTTTGAGTGTGCAAGAC 298
Query 299 CTTTGAAGATCTTTTGAAATTGGGATCTATCATGGTTTTATATACCCTTCTCTTATATGA 358
||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| ||||
Sbjct 299 CTTTGAAGATCTTATGAAATCAGGATCTATCATGGTTTTATATACCCTTGTCTTAGATGA 358
Query 359 TT 360
||
Sbjct 359 TT 360
> AT2G43460.1 | Symbols: | Ribosomal L38e protein family | chr2:18046004-18047401
REVERSE LENGTH=600
Length=600
Score = 272 bits (147), Expect = 2e-72
Identities = 200/226 (88%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 84 CAGATCCGACAATGCCGAAGCAAATCCATGAAATCAAGGACTTCCTTTTGACGGCGAGAA 143
||||| ||| |||||| ||||||||||| || ||||||||||||||| |||| || ||||
Sbjct 99 CAGATTCGAGAATGCCTAAGCAAATCCACGAGATCAAGGACTTCCTTCTGACAGCTAGAA 158
Query 144 GGAAGGATGCAAGGTCTGTGAAGATCAAGAGAAGCAAGGACATTGTGAAGTTCAAGGTCA 203
|||| |||||| | |||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 159 GGAAAGATGCACGATCTGTGAAGATCAAGAGAAGCAAGGATATTGTCAAGTTTAAGGTCA 218
Query 204 GGTGCTCAAGGTACCTCTACACACTATGTGTCTTCGACCAAGAGAAGGCTGATAAG-TTG 262
| ||||| |||||||||||||| || || ||||| ||||||||||| || || ||| ||
Sbjct 219 GATGCTCGAGGTACCTCTACACGCTCTGCGTCTTTGACCAAGAGAAAGCCGACAAGCTT- 277
Query 263 AAGCAGTCTCTTCCTCCAGGTTTGAGTGTGCAAGACCTTTGAAGAT 308
||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 278 AAGCAGTCTCTTCCTCCAGGTTTGAGTGTACAAGACCTTTGAAGAT 323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22354195415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5