BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486422
Length=2426
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59550.1 | Symbols: SYN3, ATRAD21.2, ATSYN3 | Rad21/Rec8-lik... 3350 0.0
AT4G05360.1 | Symbols: | Zinc knuckle (CCHC-type) family prote... 255 1e-66
> AT3G59550.1 | Symbols: SYN3, ATRAD21.2, ATSYN3 | Rad21/Rec8-like
family protein | chr3:21997054-22000678 FORWARD LENGTH=2472
Length=2472
Score = 3350 bits (1814), Expect = 0.0
Identities = 2230/2420 (92%), Gaps = 71/2420 (3%)
Strand=Plus/Plus
Query 1 TCTCCAAAAGCACATAAAGCCCTAACCTCTTCGtctctctctctctctctctctTGCTCT 60
|||||||||||||| ||| |||| ||| ||||| ||||||||||| | || |||||
Sbjct 25 TCTCCAAAAGCACACAAAACCCT-ACCGCTTCG----TCTCTCTCTCT-T-TC--GCTCT 75
Query 61 GCAGTTTCGTATTCGAAATTGATTGGTTTCTCTAAATTATATATAATTACCTTCGATTCG 120
|||||||| ||||| ||||||||||||||||||||| || || ||| ||||||||||||
Sbjct 76 GCAGTTTCCTATTCAAAATTGATTGGTTTCTCTAAA-TA-ATGTAA-CACCTTCGATTCG 132
Query 121 ATAA-----C-C-CT----T---C-TC----TCT-CATCTCTGCTTCTTTAGGGCTCCTT 160
|||| | | || | | || ||| |||||||||||||||||||||||||
Sbjct 133 ATAATCCTTCTCTCTCAAATCAACTTCAGTATCTCCATCTCTGCTTCTTTAGGGCTCCTT 192
Query 161 GTTCGAAGGAATT-AAATGTTTTATTCACATACGCTTTTGGCTCGAAAGGGTCCATTGGG 219
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 GTTCGAAGGAATTAAAATGTTTTATTCACATACGCTTTTGGCTCGAAAGGGTCCATTGGG 252
Query 220 GACGGTGTGGTGTGCCGCTCATGTGCAACATCGCCTCAAGAAGTCTCAGTACACCGCCGT 279
|||||||||||| |||||||||||||| || |||||||||||||||||||||||| || |
Sbjct 253 GACGGTGTGGTGCGCCGCTCATGTGCACCAACGCCTCAAGAAGTCTCAGTACACCTCCAT 312
Query 280 CAACATCCCCGACACTGTTGATAATATAATGTTTCCTGAAGCACCATTGGCATTGAGATT 339
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 313 CAACATCCCCGACACTGTTGATAATATAATGTTTCCTGAAGTACCATTGGCATTGAGAAC 372
Query 340 GTCAGGTCACCTTCTATTTGGGGTTGTGCGAATATATTCAAAGAAAGTCGATTATCTTTA 399
|||| ||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 373 GTCAAGTCACCTTCTAGTTGGGGTAGTGCGAATATATTCAAAGAAAGTGGATTATCTTTA 432
Query 400 CAATGACTGGAATCTCCTTAATACTTGGGTCGCTAAGGCTTTCGTTTCTTCTCAAGTTAA 459
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 433 CAATGACTGGAATCTCCTTAATACTTGGGTAGCTAAGGCTTTCGTTTCTACTCAAGTTAA 492
Query 460 CTTGCCTGAGGATGCGAGACAGGCGCCGCCTGAGTCTGTGACTTTGCCTCAAGCACTAAA 519
||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 493 CTTGCCTGAGGATGCCAGACAGGCCCCGCCTGAGTCTGTTACTTTGCCTCAAGCACTAAA 552
Query 520 TTTGGATGAGTTCGACTTGGAAGATGACAGACTCGACATGGAATTCGATAATCATACTCG 579
| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 553 TCTGGACGAGTTCGACTTGGAAGATGACACTCTCGACATGGAATTCGATAATCATACTCG 612
Query 580 GAGTGAGGAAGATATTACTCTAACAGATCAAATTCCTACTGGCATTGATCCTTATGTTGC 639
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 613 GAGTGAGGAAGATATCACTCTCACAGATCAAATTCCTACTGGCATTGATCCTTATGTTGC 672
Query 640 TGTAACATTCGACGAGGACATCATCTCAGAATCTATCCCGATGGATGTCGACCAATCAAC 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 TGTAACATTCGACGAGGACATCATCTCAGAATCTATCCCGATGGATGTCGACCAATCAAC 732
Query 700 AGAACCTGTGAGTGGGCATAACGGAGAAACTGATGTTGAAACGGCTCATGAGGCAGGACC 759
||||||||||||| |||||| |||||||| |||||||||||||||||||||| |||||||
Sbjct 733 AGAACCTGTGAGTAGGCATACCGGAGAAATTGATGTTGAAACGGCTCATGAGACAGGACC 792
Query 760 AGACAATGAGCCAAGAGACTCCAATATTGCTTTTGATACTGGAACCTATAGTCCTCGTAA 819
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 793 AGACAATGAGCCAAGAGACTCCAATATTGCTTTCGATACTGGAACCTATAGTCCTCGTAA 852
Query 820 CGTCACAGAGGAATTCCCTGAAGTCCAGGATCCTAGACAAAGTAACTTGACAGAAGAGAT 879
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 853 CGTCACAGAGGAATTCACTGAAGTCCAGGATCCTAGACAAAGTAACTTGACAGAAGAGCG 912
Query 880 CAATCCCAATACCGAGAGAAACGATGCCAATTCTCCTGGAAATGTTCCCGAGATTGAGAA 939
|| ||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 913 CATTCCCAATTCCGAGAGAAACGATGCCACTTCTCCTGGAACTGTTCCCGAGATTGAGAG 972
Query 940 AAGGCGTGACGCTGGGCATGATCTAAGCCCCACTTCCCATCCATCATTTGCTGCAGAACA 999
|| ||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 973 AATGCGTGACGCTGCACATGATCTAAGCCCCACGTCCCATCCATCATTTGCTGCACAACA 1032
Query 1000 ACAGAATATCAGAGTTGAACGCACTGAGTCTTTAGATGAAACTTTGAATGAGAAGGAACC 1059
|||| || |||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1033 ACAGGATGTCAGAGTTGAACGCACTGAGTCATTGGATGAAACTTTGAATGAGAAGGAACC 1092
Query 1060 CACTATCCCTAGTATTGATGAAGAAATGTTAAATTCTGGAAGGCATTCGGCGTTTGAGCT 1119
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1093 CACTATCCCTAGTATTGATGAAGAAATGTTAAATTCTGGAAGGCATTCTGCGTTTGAGCT 1152
Query 1120 GCGCTCAGGATCTCCAGGTTCTGCTG--G-TTCTGAGGAAGAACGTGCAGATTTTGTGCA 1176
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1153 TCGCTCAGGATCTCCAGGTTCTGCTGCTGGTTCTGAGGAAGAACGTGCAGATTTTGTGCA 1212
Query 1177 TCCATCACCTCAACTGGTGCTTCAGCCATCTCCTCCTCCCCCACCACAAAGAAGGAAAAG 1236
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1213 TCCATCACCTCAACTGGTGCTTCAGCCATCTCCTCCTCCCCAACCACAAAGAAGGGCAAG 1272
Query 1237 GAAGAGGAAGAACTTTGATGAG-GTC-CATGTATTAACCAACAGGTACATAAGAGAAAGG 1294
|||||||||||||||||||| | ||| || ||||||||||||| | ||||||| ||||||
Sbjct 1273 GAAGAGGAAGAACTTTGATG-GTGTCACA-GTATTAACCAACAAGAACATAAGTGAAAGG 1330
Query 1295 CTTGAGGATCCTAGTGATACTCTACGTAAGAGAAAGAAGATGCCTTCATCGAAAGTAAAT 1354
||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1331 CTTAAGGATCCTAGTGATACTCTACGTAAGAGAAAGAAGATGCCTTCATCCAAATTAAA- 1389
Query 1355 GTTT-GGAGAATGAATAACCAGTCAAGGAAGGATCAAAAGTTTGA-TGAGCCCTTGTTTA 1412
|||| |||||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 1390 GTTTTGGAGAATGAATAACCAGTCAAGGAAGGATCAAAA-TTTCAATGAGCCCTTGTTTA 1448
Query 1413 CTGGCTTCTCAGATGTTTTAGGCAGGGTCTTTGAAAAGGACTATGTAGCTTCGAAGCCAT 1472
||||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||||
Sbjct 1449 CTGGCTTCTCAGATGATTTACGCAATGTCTTTGAAAAGGACTATGTAGCTTCAAAGCCAC 1508
Query 1473 ATCTTGCTGTTTCTGATGAAACTTTACCTGAACCTTCATCTGTATCATCTCCTACTCGAG 1532
|||||||||||||||||||||||||||| |||||| |||||||||| || | ||||||||
Sbjct 1509 ATCTTGCTGTTTCTGATGAAACTTTACCAGAACCTGCATCTGTATC-TC-C-TACTCGAG 1565
Query 1533 AAGCTGAAACAGAAATTAACCCGGTCTCTCCAATTCCACGAGTTATCGTTCCTGATTCTA 1592
|||||||| ||||||||| |||||||||||||||||| || || | | | |||
Sbjct 1566 AAGCTGAAGTAGAAATTAATCCGGTCTCTCCAATTCCA-GA-TT--C-T-----A--CTA 1613
Query 1593 CTAATCCAGACAGTACAGTTCAGCTATCTCCAGTTCAACAAACTGAAGATGCCCAAGACT 1652
| ||||||||||||||||||||||||||||| || ||||||||||||| || |||||
Sbjct 1614 --A-TCCAGACAGTACAGTTCAGCTATCTCCAGCGCAGCAAACTGAAGATGTCCTAGACT 1670
Query 1653 TTACAGGTCCTCGACCCACGCATCCAGAGTCTGTAGCAACAGAAGCTCAATCTCCGCAGA 1712
| |||||||||||||| ||||| |||||||||||||||||||||| |||||||| | ||
Sbjct 1671 CTGCAGGTCCTCGACCCGCGCATGCAGAGTCTGTAGCAACAGAAGCACAATCTCCTCGGA 1730
Query 1713 CATTTGATAATGATGACATTGGAATCGAACATTTAAGGGATGGTGGTTTCCCTGTGTACA 1772
|||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 1731 CATTTGATAACGATGACATGGGAATAGAACATTTAAGGGATGGTGGTTTCCCGGTGTACA 1790
Query 1773 TGCCGTCACCACCTCCAAGATCTTCACCTTTTAGAACCAATGACTTCACCACTCAGCCTG 1832
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1791 TGCCGTCACCACCTCCAAGATCTTCACCTTTTAGAACCGATGACTTCACCACTCAGTCTG 1850
Query 1833 GAACTTGGGAGACAGAATCTTACAGAACAGAGCCTTCAACTTCCACAGTTCCAGAGGACT 1892
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1851 GAAATTGGGAGACAGAATCTTATAGAACAGAGCCTTCAACTTCCACAGTTCCAGAGGACT 1910
Query 1893 TGCCTGGACCAA-GAAATTTGGGGCTTTCACCTGTTTCTGAAACGACTAATGAGGAACTT 1951
||||||| |||| |||||||||||||||||||||||||||||| |||| | |||||||||
Sbjct 1911 TGCCTGG-CCAAAGAAATTTGGGGCTTTCACCTGTTTCTGAAAGGACTGACGAGGAACTT 1969
Query 1952 TATTTCCTGGAGGTAGGAGGGAATACCCCAGTAGGAACACC---TAGTCAAGATTCTGAT 2008
||||||||||||||||| || ||| |||||||||||||||| |||||||||||||| |
Sbjct 1970 TATTTCCTGGAGGTAGGTGGCAATTCCCCAGTAGGAACACCAGCTAGTCAAGATTCTGCT 2029
Query 2009 GCTTTGACAGGGAGAGCAAGAGCCTTGGCTCAGTATCTTAGACAACGTTCTTCAAGTAGT 2068
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2030 GCTTTGACAGGGAGAGCAAGAGCCTTGGCTCAGTATCTTAAACAACGTTCTTCAAGTAGT 2089
Query 2069 CCCAC-A--TCAAGCCATCCTTCTGGAGATCTAAGTTTGAGCGAGATCTTGGCAGGAAAG 2125
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2090 CCCACCACATCAAGCCATCCTTCTGGAGATCTAAGTTTGAGCGAGATCTTGGCAGGAAAG 2149
Query 2126 ACAAGGAAGCTAGCTGCTCGAATGTTCTTCGAGACACTGGTTTTGAAGTCTAGGGGACTT 2185
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2150 ACACGGAAGCTAGCTGCTCGAATGTTCTTCGAGACACTGGTTTTGAAGTCTAGGGGACTT 2209
Query 2186 ATAGATATGCAACAGGACCGACCCTACGGCGATATCGCTTTGAAGTTGATGCCTGCCCTT 2245
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 2210 ATAGATATGCAACAGGACCGACCATACGGAGATATCGCTTTGAAGTTGATGCCTGCCCTT 2269
Query 2246 TTTTCAAAGGTTCAAACATGAATAAACAATGCTTAGTAGACTTATTTATGTATATTATTA 2305
||||| ||||||||||| ||||||||||||||||| || ||||| |||||||||||||||
Sbjct 2270 TTTTCTAAGGTTCAAACGTGAATAAACAATGCTTAATAAACTTACTTATGTATATTATTA 2329
Query 2306 GCATTGAAGAAAGACGAGGAAGTAGTCA-TTCTTAATTTATTGATCCCTGGTTTGATTAC 2364
|||||||| ||||||||||||||||| |||||||||| |||| ||||||||| |||||
Sbjct 2330 ACATTGAAGCTAGACGAGGAAGTAGTCAATTCTTAATTTTTTGAGCCCTGGTTTTATTAC 2389
Query 2365 ATTTTGTTCAAGTAAAGCTT 2384
||| ||| ||||||||||||
Sbjct 2390 ATTGTGTACAAGTAAAGCTT 2409
> AT4G05360.1 | Symbols: | Zinc knuckle (CCHC-type) family protein
| chr4:2728204-2732337 FORWARD LENGTH=2208
Length=2208
Score = 255 bits (138), Expect = 1e-66
Identities = 289/359 (81%), Gaps = 21/359 (6%)
Strand=Plus/Plus
Query 1297 TGAGGATCCTAGTGATACTCTACGTAAGAGAAAGAAGATGCCTTCATCGAAAGTAAATGT 1356
||||||||||||| | ||| | ||||||||||||||| || ||||||| ||| || | |
Sbjct 246 TGAGGATCCTAGTAAGACTGTTCGTAAGAGAAAGAAGTTGTCTTCATCAAAACTAGGT-T 304
Query 1357 TT-GGAGA-ATGAATAACCAGTCAAGGAAGGATCAAAAGTTT-GATGAGCCCTTGTTTAC 1413
|| ||||| || |||||||||||| |||||||| || ||| | ||||||||||||||
Sbjct 305 TTCGGAGACTTG-ATAACCAGTCAAAGAAGGATC-AACTTTTCAACGAGCCCTTGTTTAC 362
Query 1414 TGGCTTCTCAGATGTTTTAGGCAGGGTCTTTGAAAAGGACTATGTAGCTTCGAAGCCATA 1473
|||||||||| |||||||| ||| |||||| ||||||| | ||||| | || ||||
Sbjct 363 TGGCTTCTCAAATGTTTTACTCAGTGTCTTTAAAAAGGATTGTGTAG---CAAAATCATA 419
Query 1474 TCTTGCTGTTTCTGATGAAACTTTACCTGAACCT-TCATCTGTATCATCTCCTACTCGAG 1532
| |||||| || | ||| ||||| | || | | |||||||||||||||||||||
Sbjct 420 TTTTGCTG---CTCCT-AAA--GAACCTGCATCTGT-ACCTGTATCATCTCCTACTCGAG 472
Query 1533 AAGCTGAAACAGAAATTAACCCGGTCTCTCCAATTCCACGAGT-TATC-GTTCCTGATTC 1590
|||||||||||||||||||| ||| ||||||| || ||| | | || | |||||||||||
Sbjct 473 AAGCTGAAACAGAAATTAACTCGGCCTCTCCAGTTACACAA-TCTA-CAGTTCCTGATTC 530
Query 1591 TACTAATCCAGACAGTACAGTTCAGCTATCTCCAGTTCAACAAACTGAAGATGCCCAAG 1649
|||||||| ||| ||||| ||||||| |||| ||| ||| ||||||||| || |||||
Sbjct 531 TACTAATCAAGAGAGTACGGTTCAGCGATCTTCAGGTCAGCAAACTGAACATTTCCAAG 589
Score = 150 bits (81), Expect = 5e-35
Identities = 113/128 (88%), Gaps = 3/128 (2%)
Strand=Plus/Plus
Query 1768 GTACATGCCGTCACCACCTCCAAGATCTTCACCTTTTAGAACCAATGACTTCACCACTCA 1827
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 633 GTACATGCTATCACCACCTCCAAGATCTTCACCTTTTAGAACCAATGGCTTCACCATTCA 692
Query 1828 GCCTGGAACTTGGGAGACAGAATCTTACAGAACAGAGCCTTCAACTTCCA-CAGTTCCAG 1886
|||| ||| |||||||||| ||||||||||||| | ||||||||||||| || | | ||
Sbjct 693 TCCTGAAACATGGGAGACAGGATCTTACAGAACACAACCTTCAACTTCCAACAATAC-AG 751
Query 1887 AGGA-CTT 1893
|||| |||
Sbjct 752 AGGAACTT 759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120481308000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5