BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486427
Length=1743
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59630.1 | Symbols: | diphthamide synthesis DPH2 family pro... 2730 0.0
> AT3G59630.1 | Symbols: | diphthamide synthesis DPH2 family protein
| chr3:22025074-22027868 REVERSE LENGTH=1849
Length=1849
Score = 2730 bits (1478), Expect = 0.0
Identities = 1613/1677 (96%), Gaps = 14/1677 (1%)
Strand=Plus/Plus
Query 1 TTCTTCGGCCGCAAATCCAAGTCGACGAAT---ACGATTTTAGTTATTCGGCCGGAAAGG 57
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 9 TTCTTCAGCCGCAAATCCAAGTCGACGAATACGACGATTTTAGTTATTCGGCCGGAAAGG 68
Query 58 TTGATAATTTCCG-GTGATTAATCTATGGAGTTGGAATTTGAATCAAAGTATGAGATTAA 116
|||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 69 TTGATAATTT-CGTGTGATTAATCTATGGAGTTGGAATTTGAATCAAAGTACGAGATTAA 127
Query 117 TCGTACGGCGGAGTTCATTATCAGCAAAAGCTTCACCAGAATTGCTTTACAGTTCCCGGA 176
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 128 CCGTACGGCGGAGTTCATTATTAGCAAAAGCTTCACCAGAATTGCTTTACAGTTCCCGGA 187
Query 177 TGACTTGTTAAAGGATTCGACTAAGGTCGTGAGTGCTCTTAAGAGCAAAACTCGTTTGCT 236
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 TGAGTTGTTAAAAGATTCGACTAAGGTCGTGAGTGCTCTTAAGAGCAAAACTCGTTTGCT 247
Query 237 TACTGACAGAGAAATCAGGTTCTTTGTAATGGCTGACACAACTTATGGTAGCTGCTGCAT 296
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 248 TACTGACAGAGAAGTCAGGTTCTTTGTAATGGCTGACACAACTTATGGTAGTTGCTGTAT 307
Query 297 TGATGAAGTTGGAGCTTTGCATATTGATGCTGAATGTGTTGTTCATTATGGTCAAACATG 356
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 308 TGATGAAGTTGGAGCTTTGCATATTGATTCTGAATGTGTTGTTCATTACGGTCAAACATG 367
Query 357 TCTAAGCCCGACATCGGTTCTTCCAGCATTCTTTGTTTTCGGGAAAGCTTCGATAAACGT 416
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 368 TCTAAGCCCGACATCAGTTCTTCCAGCATTCTTCGTTTTTGGGAAAGCTTCGATAAACGT 427
Query 417 CTCCAGCTGCGTTAAGCATTTGATAGATTATGCGTCAAAGAGGGATATGCCTATTATGAT 476
||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||
Sbjct 428 CTCCAGCTGTGTTAAGCATTTGATAGATTATGCGTCAAAGAGCGATAAGCCTATCATGAT 487
Query 477 TCTTTATGGACTAGAATACGCGCATGTCATTCCCCATATCCGAGAAGAATTAGGATTATC 536
||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 488 TCTTTATGGTCTAGAATACGCGCATGTAATTCCACAAATCCGAGAAGAATTAGGATTATC 547
Query 537 GAAGACTGGGTCTCAGTTGAAGTTATCTGTAGCTAATGTCTTGTGTTCATTCATTAGTCC 596
||||||| | | || | || ||||||||||| ||||||||||||||||||||||||||
Sbjct 548 GAAGACT-GAT-TC---TCAA-TTATCTGTAGCCAATGTCTTGTGTTCATTCATTAGTCC 601
Query 597 ATCCAGAGATCCTAGAGAACCCATGGAGCATCCGAGACCACT-TAGCGAAAGTGATTCTA 655
||||| ||||||||||||| |||||||||||||||||||| | |||||||||||||||||
Sbjct 602 ATCCAAAGATCCTAGAGAATCCATGGAGCATCCGAGACCA-TATAGCGAAAGTGATTCTA 660
Query 656 GTGATAGCTTATCCTCATCCAGGAGCTATAGACTAGGAGGGCTAACTTGGGACTTGCCAG 715
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTGATAGCTTATCCTCATCTAGGAGCTATAGACTAGGAGGGCTAACTTGGGACTTGCCAG 720
Query 716 AAGGAAGCAAAATCGAGGACTATTTACTTTTCTGGATAGGTTCTGACAGTTCAGCTTTTG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAGGAAGCAAAATCGAGGACTATTTACTTTTCTGGATAGGTTCTGACAGTTCAGCTTTTG 780
Query 776 CCAATGTAGTACTGACCTTCAATGGTTGTGACATAGTCAGATATGATGCTGAAGAAGATT 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CCAATGTAGTACTGACCTTCAATGGTTGTGACATAGTCAGATATGATGCTGAAGAAGATT 840
Query 836 CTTTGGTGACGGAATTTTATCAACAAAGAAGGATACTTAAGCGACGATATTACTTGGTGG 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTTTGGTGACGGAATTTTATCAACAAAGAAGGATACTTAAGCGACGATATTACTTGGTGG 900
Query 896 AAAAAGCTAAGGATGCGAATATTATAGGTATTTTGGTGGGGACTCTTGGTGTTGCTGGTT 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AAAAAGCTAAGGATGCGAATATTATAGGTATTTTGGTGGGGACTCTTGGTGTTGCTGGTT 960
Query 956 ACCTTCATATGATTCACCATATGCAAGCACTCATATCTGCAGCTGGCAAAAAATCTTACA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ACCTTCATATGATTCACCATATGCAAGCACTCATATCTGCAGCTGGCAAAAAATCTTACA 1020
Query 1016 TTCTTGCCATGGGACGGCCTAATCCGGCCAAACTCGCAAACTTCCCCGAGTGCGATGTTT 1075
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTCTTGCCATGGGACGGCCTAACCCGGCCAAACTCGCAAACTTCCCCGAGTGCGATGTTT 1080
Query 1076 TCATCTACATCTCATGTGCCCAAACGGCTCTTTTAGATAGCAAAGAGTTCATGTCCCCTG 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TCATCTACATCTCATGTGCCCAAACGGCTCTTTTAGATAGCAAAGAGTTCATGTCCCCTG 1140
Query 1136 TCATTACTCCATTCGAAGCCAATCTTGCTTTTAGCAGAGGGAGTGAATGGACAGGTGCAT 1195
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TCATTACTCCGTTCGAAGCCAATCTTGCTTTTAGCAGAGGGAGTGAATGGACAGGTGCAT 1200
Query 1196 ACCTAATGCATTTCCAAGATGTGATCAACTCTGTAAAATCGGAATCAGAAGCACATAGCG 1255
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1201 ACCTAATGCATTTCCAAGATGTGATCAACTCTGTAAAATCAGAATCAGAAGCACATATCG 1260
Query 1256 GATCAGAGGAGCCACGGTTCTCCTTCTTTCAGGGTGGTTACGTAGAAGATCACAAAACAA 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GATCAGAGGAGCCACGGTTCTCCTTCTTTCAGGGTGGTTACGTAGAAGATCACAAAACAA 1320
Query 1316 ACGATCAAGCTAAGAATGGAGAAGAAGACACAGGAGAGACAATGGCATTGGTACAAGCTG 1375
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1321 ATGATCAAGCTAAGAATGGAGAAGAAGACACAGGAGAGACAATGACATTGGTACAAGCTG 1380
Query 1376 CAGAGAAAGCATTGCAGTTGAGAGGCAATGATCATAACTCACTGACTAAACAAACCGCTG 1435
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1381 CAGAGAAAGCATTGCAGTTGCGAGGCAATGATCATAACTCATTGACTAAACAAACCGCTG 1440
Query 1436 CAAAATCAGGACCTGAGTATTTCCTCAGCCGAGCTTATCGCGGGTTGGAGATAAATAGTG 1495
||||||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||
Sbjct 1441 CAAAATCAGGACCTGAGTATTTCCTTAACCGAGTTTATCGCGGTTTGGAGATAAATAGTG 1500
Query 1496 AGAATACTTCGCCAGAGCCTTACATAGTTGGGAGAAGCGGGAAGGCGTCTGGATACAAGC 1555
||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1501 AGAATACTTTGCCGGAGCCTTATATAGTTGGGAGAAGCGGGAAGGCGTCTGGATACAAGC 1560
Query 1556 ACGAATAGCAAACTCCAAGAAGTTCAGTTTGATCACAAAGATAGATTTGTGCTAGGTCAG 1615
|||| |||||| |||||||||||| |||||||||||||||| |||||||||||| |||||
Sbjct 1561 ACGAGTAGCAA-CTCCAAGAAGTTGAGTTTGATCACAAAGAAAGATTTGTGCTATGTCAG 1619
Query 1616 AAACTGTTTTACTGGCTTCGTATGAGATTGTTAGAAGAGAGAATGTTTGCACACACA 1672
| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1620 ACACTGTTTTACTGGCTTCCTATGAGATTGTTAGAAGAGAAAATGTTTGCACACACA 1676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86194335765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5