BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486428
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59640.1 | Symbols: | glycine-rich protein | chr3:22028781-... 1380 0.0
AT2G43630.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 320 2e-86
> AT3G59640.1 | Symbols: | glycine-rich protein | chr3:22028781-22030445
FORWARD LENGTH=982
Length=982
Score = 1380 bits (747), Expect = 0.0
Identities = 869/926 (94%), Gaps = 16/926 (2%)
Strand=Plus/Plus
Query 103 AAGATCCTGGAGTTGATGTATTGAGAGAAGCC-TTGGAGATAAAAGATGAGCTCTACGCA 161
|||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||
Sbjct 52 AAGATCCTGGAGTTGATGTATTGAGAGAAGCCATT-GAGATAAGAGATGAGCTCTACGCA 110
Query 162 GGCTAATCTATGCAGACCATCCTTGTTCTGTGCAAGGACAACACAAACAAGACATGTCTC 221
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 111 GGCTAATCTATGCAGACCATCCTTGTTCTGTGCAAGGACAACGCAAACAAGACATGTCTC 170
Query 222 T-GTGGCATCTTTTAAGTCGTCATTACGCTTTGATTATCGACCACTCCCCAAATTAACTA 280
| || ||| |||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 171 TAGT-GCACCTTTTATGTCGTCATTACGCTTTGATTATCGACCACTCCCCAAATTAGCTA 229
Query 281 TTCGGGCATCTGCATCATCATCATCCATGTCTACTCTA-TTTTCGCCTCTACAAAATCAT 339
|||||||||||| |||||||||| |||||| ||| | |||||||||||||| ||||||
Sbjct 230 TTCGGGCATCTG---CATCATCATCGATGTCTTCTC-AGTTTTCGCCTCTACAGAATCAT 285
Query 340 CGATGTCGGAATCAGAGGCAAGGTCCTGTTTTGTGCTTACTTGGTGGGAAGGATAAGTCT 399
|| || |||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 286 CGCTGCCGGAATCAGAGGCAAGGTCCTGTTGTGTGTTTACTTGGTGGGAAGGATAAGTCT 345
Query 400 AACGGGAGTAACGAGATATCATCACCATGGAAAGCTATTGAGAATGCAATGGGGAAGAAA 459
||||| ||||| ||| |||||||| ||||| ||||||||||||| |||||||||||||||
Sbjct 346 AACGGTAGTAATGAGCTATCATCAACATGGGAAGCTATTGAGAAAGCAATGGGGAAGAAA 405
Query 460 TCGGTTGAAGATATGTTGCGTGAGCAGATACAAAAGAAAGACACTGGCGGCATTCCTCCA 519
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 TCAGTTGAAGATATGTTGCGTGAGCAGATACAAAAGAAAGACACTGGCGGCATTCCTCCA 465
Query 520 C-A--AGGAGGAGGAGGGGGTGGCGGTAGAAATGGTGGGAATAATGGGTCTGGAGGCTCA 576
| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 CGAGGACGAGGAGGAGGGGGTGGCGGTAGAAATGGTGGGAATAATGGGTCTGGAGGCTCA 525
Query 577 TCAGGAGAAGATGGTGGTCTTGCTAGTTTTGGGGATGAAACTCTGCAAGTGGTATTAGCA 636
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TCAGGGGAAGATGGTGGTCTTGCTAGTTTTGGGGATGAAACTCTGCAAGTGGTATTAGCA 585
Query 637 ACCTTAGGCTTCATCTTTCTGTACATCTACATCATCAACGGGGAGGAGTTGTTCCGACTT 696
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||
Sbjct 586 ACCTTAGGCTTCATCTTTCTGTACTTCTACATCATCAATGGGGAGGAGTTGTTCCGTCTT 645
Query 697 GCAAGAGATTACATTAGGTACCTTATAGGACGACCCAAGAGTGTTAGGCTGACCCGAGTT 756
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 646 GCAAGAGATTACATTAGGTACCTTATAGGAAGACCCAAGAGTGTTAGGCTGACCCGAGTT 705
Query 757 ATGGAAGGTTGGAGTAGATTCTTCGAGA-GTATGTCGAGGAAAAGAGTGTATAACGAGTA 815
|||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||
Sbjct 706 ATGGAAGGTTGGAGTAGATTCTTCGAGAAG-ATGTCGAGGAAAAAAGTGTATAACGAGTA 764
Query 816 CTGGCTAAAGATCAAGCGATCATCAACACGTCTACCTGGTATGATAACCCGGGCAAATAC 875
|||||||||||| ||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 765 CTGGCTAAAGATTAAGCGATCATCAACAAGTCTACCTGGTCTGGTAACCCGGGCAAATAC 824
Query 876 AGACGCATCTTGAGATCTTATGTTGATTCAAATGAAATGAAGATAGTGATTGGTTTTCTT 935
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 825 AAACGCATCTTGAGATCTTATGTTGATTCAAATGAAATGAAGATAGTGATCGGTTTTCTT 884
Query 936 ACTGATAAAAGTAGTTTCCCTTGGACCCTGAACCGTGTTTTTGTTTTAGCTTTA-GTTAC 994
|||| | |||||||||||||| |||||| | ||||||||||||||| | |||| |||||
Sbjct 885 ACTGGTTTAAGTAGTTTCCCTTAGACCCTTACCCGTGTTTTTGTTTTTG-TTTAAGTTAC 943
Query 995 TTTCGCCATTAGTAAATATTGATGCT 1020
||| |||| |||||||||||||||||
Sbjct 944 TTTTGCCAGTAGTAAATATTGATGCT 969
> AT2G43630.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast, nucleus, chloroplast
envelope; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: glycine-rich protein (TAIR:AT3G59640.2); Has 67 Blast
hits to 67 proteins in 20 species: Archae - 0; Bacteria
- 4; Metazoa - 9; Fungi - 1; Plants - 49; Viruses - 2; Other
Eukaryotes - 2 (source: NCBI BLink). | chr2:18095775-18097488
FORWARD LENGTH=1128
Length=1128
Score = 320 bits (173), Expect = 2e-86
Identities = 455/583 (78%), Gaps = 51/583 (9%)
Strand=Plus/Plus
Query 358 CAAGGTCCTGTTTTGTGCTTACTTGGTGGGAAGGATAAGTCTAACGGGAGTAACGAGATA 417
||| || ||| | |||||||| |||||||||| ||||| || | || ||| | ||| |
Sbjct 373 CAAAGTTCTGCTGTGTGCTTATTTGGTGGGAAAGATAAACCTGATGGTAGTGATGAG--A 430
Query 418 TCATCACCATGGAAAGCTATTGAGAATGCAATGGGGAAGAAATCGGTTGAAGATATGTTG 477
| ||| ||||||||||| || ||||| || ||||||||||||||||||||||||||||||
Sbjct 431 T-ATCGCCATGGAAAGCAATAGAGAAAGCTATGGGGAAGAAATCGGTTGAAGATATGTTG 489
Query 478 CGTGAGCAGATACAAAAGAAAGAC----A-----CTG---G---CGGCAT--T-CCTCCA 519
|| ||||||||||| ||||||||| | ||| | ||||| | ||||||
Sbjct 490 CGAGAGCAGATACAGAAGAAAGACTTTTATGATACTGACAGTGGCGGCAACATGCCTCCA 549
Query 520 CAAGGAGGAGG-AG-GG-GGTGGCGGTAGAAATGGTG-GGAATAATGGGTC-TGGAGGCT 574
| |||||||| || || || || ||| ||||||||| ||| | ||| || ||| |
Sbjct 550 CGTGGAGGAGGCAGTGGTGGCGGTGGTGGAAATGGTGAGGA-----GCGTCCTGAAGGGT 604
Query 575 CATCAGGAGAAGATGGTGGTCTTGCTAGTTTTGGGGATGAAACTCTGCAAGTGGTATTAG 634
|| |||||||||||||||||||||| | | | ||||||||| |||||||||| || |
Sbjct 605 CAGGAGGAGAAGATGGTGGTCTTGCTGGGATCGCAGATGAAACTTTGCAAGTGGTTTTGG 664
Query 635 CAACCTTAGGCTTCATCTTTCTGTACATC-TACATCATCAAC-GGGGAGGAGTTGTTCC- 691
| |||||||||||||||||| |||||| | ||||| |||| | |||||||| ||| ||
Sbjct 665 CGACCTTAGGCTTCATCTTTTTGTACA-CATACATTATCA-CTGGGGAGGAATTGGTCAA 722
Query 692 GACTTGCAAGAGATTACATTAGGTACCTTATAGGACGACCCAAGAGTGTTAGGCTGACCC 751
| |||||||| ||||||||||||| ||||| ||| |||| |||| |||| | ||||||
Sbjct 723 G-CTTGCAAGGGATTACATTAGGTTTCTTATGGGAAGACCTAAGACTGTTCGATTGACCC 781
Query 752 GAGTTATGGA-AGGTTGGAGTAGATTCTTCGAGA-GTATGTCGAGGAAAAGAGTGTATAA 809
||| ||||| || ||||| ||||||| |||| | ||||||||| ||||||||||| |
Sbjct 782 GAGCCATGGATAG-TTGGAACGGATTCTTGGAGAAG-ATGTCGAGGCAAAGAGTGTATGA 839
Query 810 CGAGTACTGGCTAAAGATCAAG-CGATCATCAACACGTCTACCTGGTATGATAACCCGG- 867
||||| |||||| | | ||| ||||||||||||| | ||||||||||||| ||| |
Sbjct 840 TGAGTATTGGCTAGA-A--AAGGCGATCATCAACACACCAACCTGGTATGATAGCCCTGA 896
Query 868 GCAAATACAGACGCATCT-TGA-GATCTTATGTTGATTCAAAT 908
| || |||||||| | | | | | |||||||||||||||||
Sbjct 897 G-AAGTACAGACGTGT-TATCAAGG-CTTATGTTGATTCAAAT 936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49982976265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5