BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486428 Length=1020 Score E Sequences producing significant alignments: (Bits) Value AT3G59640.1 | Symbols: | glycine-rich protein | chr3:22028781-... 1380 0.0 AT2G43630.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 320 2e-86 > AT3G59640.1 | Symbols: | glycine-rich protein | chr3:22028781-22030445 FORWARD LENGTH=982 Length=982 Score = 1380 bits (747), Expect = 0.0 Identities = 869/926 (94%), Gaps = 16/926 (2%) Strand=Plus/Plus Query 103 AAGATCCTGGAGTTGATGTATTGAGAGAAGCC-TTGGAGATAAAAGATGAGCTCTACGCA 161 |||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||| Sbjct 52 AAGATCCTGGAGTTGATGTATTGAGAGAAGCCATT-GAGATAAGAGATGAGCTCTACGCA 110 Query 162 GGCTAATCTATGCAGACCATCCTTGTTCTGTGCAAGGACAACACAAACAAGACATGTCTC 221 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 111 GGCTAATCTATGCAGACCATCCTTGTTCTGTGCAAGGACAACGCAAACAAGACATGTCTC 170 Query 222 T-GTGGCATCTTTTAAGTCGTCATTACGCTTTGATTATCGACCACTCCCCAAATTAACTA 280 | || ||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 171 TAGT-GCACCTTTTATGTCGTCATTACGCTTTGATTATCGACCACTCCCCAAATTAGCTA 229 Query 281 TTCGGGCATCTGCATCATCATCATCCATGTCTACTCTA-TTTTCGCCTCTACAAAATCAT 339 |||||||||||| |||||||||| |||||| ||| | |||||||||||||| |||||| Sbjct 230 TTCGGGCATCTG---CATCATCATCGATGTCTTCTC-AGTTTTCGCCTCTACAGAATCAT 285 Query 340 CGATGTCGGAATCAGAGGCAAGGTCCTGTTTTGTGCTTACTTGGTGGGAAGGATAAGTCT 399 || || |||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 286 CGCTGCCGGAATCAGAGGCAAGGTCCTGTTGTGTGTTTACTTGGTGGGAAGGATAAGTCT 345 Query 400 AACGGGAGTAACGAGATATCATCACCATGGAAAGCTATTGAGAATGCAATGGGGAAGAAA 459 ||||| ||||| ||| |||||||| ||||| ||||||||||||| ||||||||||||||| Sbjct 346 AACGGTAGTAATGAGCTATCATCAACATGGGAAGCTATTGAGAAAGCAATGGGGAAGAAA 405 Query 460 TCGGTTGAAGATATGTTGCGTGAGCAGATACAAAAGAAAGACACTGGCGGCATTCCTCCA 519 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 406 TCAGTTGAAGATATGTTGCGTGAGCAGATACAAAAGAAAGACACTGGCGGCATTCCTCCA 465 Query 520 C-A--AGGAGGAGGAGGGGGTGGCGGTAGAAATGGTGGGAATAATGGGTCTGGAGGCTCA 576 | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 466 CGAGGACGAGGAGGAGGGGGTGGCGGTAGAAATGGTGGGAATAATGGGTCTGGAGGCTCA 525 Query 577 TCAGGAGAAGATGGTGGTCTTGCTAGTTTTGGGGATGAAACTCTGCAAGTGGTATTAGCA 636 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 526 TCAGGGGAAGATGGTGGTCTTGCTAGTTTTGGGGATGAAACTCTGCAAGTGGTATTAGCA 585 Query 637 ACCTTAGGCTTCATCTTTCTGTACATCTACATCATCAACGGGGAGGAGTTGTTCCGACTT 696 |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||| Sbjct 586 ACCTTAGGCTTCATCTTTCTGTACTTCTACATCATCAATGGGGAGGAGTTGTTCCGTCTT 645 Query 697 GCAAGAGATTACATTAGGTACCTTATAGGACGACCCAAGAGTGTTAGGCTGACCCGAGTT 756 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 646 GCAAGAGATTACATTAGGTACCTTATAGGAAGACCCAAGAGTGTTAGGCTGACCCGAGTT 705 Query 757 ATGGAAGGTTGGAGTAGATTCTTCGAGA-GTATGTCGAGGAAAAGAGTGTATAACGAGTA 815 |||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||| Sbjct 706 ATGGAAGGTTGGAGTAGATTCTTCGAGAAG-ATGTCGAGGAAAAAAGTGTATAACGAGTA 764 Query 816 CTGGCTAAAGATCAAGCGATCATCAACACGTCTACCTGGTATGATAACCCGGGCAAATAC 875 |||||||||||| ||||||||||||||| ||||||||||| || |||||||||||||||| Sbjct 765 CTGGCTAAAGATTAAGCGATCATCAACAAGTCTACCTGGTCTGGTAACCCGGGCAAATAC 824 Query 876 AGACGCATCTTGAGATCTTATGTTGATTCAAATGAAATGAAGATAGTGATTGGTTTTCTT 935 | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 825 AAACGCATCTTGAGATCTTATGTTGATTCAAATGAAATGAAGATAGTGATCGGTTTTCTT 884 Query 936 ACTGATAAAAGTAGTTTCCCTTGGACCCTGAACCGTGTTTTTGTTTTAGCTTTA-GTTAC 994 |||| | |||||||||||||| |||||| | ||||||||||||||| | |||| ||||| Sbjct 885 ACTGGTTTAAGTAGTTTCCCTTAGACCCTTACCCGTGTTTTTGTTTTTG-TTTAAGTTAC 943 Query 995 TTTCGCCATTAGTAAATATTGATGCT 1020 ||| |||| ||||||||||||||||| Sbjct 944 TTTTGCCAGTAGTAAATATTGATGCT 969 > AT2G43630.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, nucleus, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G59640.2); Has 67 Blast hits to 67 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 1; Plants - 49; Viruses - 2; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:18095775-18097488 FORWARD LENGTH=1128 Length=1128 Score = 320 bits (173), Expect = 2e-86 Identities = 455/583 (78%), Gaps = 51/583 (9%) Strand=Plus/Plus Query 358 CAAGGTCCTGTTTTGTGCTTACTTGGTGGGAAGGATAAGTCTAACGGGAGTAACGAGATA 417 ||| || ||| | |||||||| |||||||||| ||||| || | || ||| | ||| | Sbjct 373 CAAAGTTCTGCTGTGTGCTTATTTGGTGGGAAAGATAAACCTGATGGTAGTGATGAG--A 430 Query 418 TCATCACCATGGAAAGCTATTGAGAATGCAATGGGGAAGAAATCGGTTGAAGATATGTTG 477 | ||| ||||||||||| || ||||| || |||||||||||||||||||||||||||||| Sbjct 431 T-ATCGCCATGGAAAGCAATAGAGAAAGCTATGGGGAAGAAATCGGTTGAAGATATGTTG 489 Query 478 CGTGAGCAGATACAAAAGAAAGAC----A-----CTG---G---CGGCAT--T-CCTCCA 519 || ||||||||||| ||||||||| | ||| | ||||| | |||||| Sbjct 490 CGAGAGCAGATACAGAAGAAAGACTTTTATGATACTGACAGTGGCGGCAACATGCCTCCA 549 Query 520 CAAGGAGGAGG-AG-GG-GGTGGCGGTAGAAATGGTG-GGAATAATGGGTC-TGGAGGCT 574 | |||||||| || || || || ||| ||||||||| ||| | ||| || ||| | Sbjct 550 CGTGGAGGAGGCAGTGGTGGCGGTGGTGGAAATGGTGAGGA-----GCGTCCTGAAGGGT 604 Query 575 CATCAGGAGAAGATGGTGGTCTTGCTAGTTTTGGGGATGAAACTCTGCAAGTGGTATTAG 634 || |||||||||||||||||||||| | | | ||||||||| |||||||||| || | Sbjct 605 CAGGAGGAGAAGATGGTGGTCTTGCTGGGATCGCAGATGAAACTTTGCAAGTGGTTTTGG 664 Query 635 CAACCTTAGGCTTCATCTTTCTGTACATC-TACATCATCAAC-GGGGAGGAGTTGTTCC- 691 | |||||||||||||||||| |||||| | ||||| |||| | |||||||| ||| || Sbjct 665 CGACCTTAGGCTTCATCTTTTTGTACA-CATACATTATCA-CTGGGGAGGAATTGGTCAA 722 Query 692 GACTTGCAAGAGATTACATTAGGTACCTTATAGGACGACCCAAGAGTGTTAGGCTGACCC 751 | |||||||| ||||||||||||| ||||| ||| |||| |||| |||| | |||||| Sbjct 723 G-CTTGCAAGGGATTACATTAGGTTTCTTATGGGAAGACCTAAGACTGTTCGATTGACCC 781 Query 752 GAGTTATGGA-AGGTTGGAGTAGATTCTTCGAGA-GTATGTCGAGGAAAAGAGTGTATAA 809 ||| ||||| || ||||| ||||||| |||| | ||||||||| ||||||||||| | Sbjct 782 GAGCCATGGATAG-TTGGAACGGATTCTTGGAGAAG-ATGTCGAGGCAAAGAGTGTATGA 839 Query 810 CGAGTACTGGCTAAAGATCAAG-CGATCATCAACACGTCTACCTGGTATGATAACCCGG- 867 ||||| |||||| | | ||| ||||||||||||| | ||||||||||||| ||| | Sbjct 840 TGAGTATTGGCTAGA-A--AAGGCGATCATCAACACACCAACCTGGTATGATAGCCCTGA 896 Query 868 GCAAATACAGACGCATCT-TGA-GATCTTATGTTGATTCAAAT 908 | || |||||||| | | | | | ||||||||||||||||| Sbjct 897 G-AAGTACAGACGTGT-TATCAAGG-CTTATGTTGATTCAAAT 936 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49982976265 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5