BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486430
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59650.2 | Symbols: | mitochondrial ribosomal protein L51/S... 621 2e-177
> AT3G59650.2 | Symbols: | mitochondrial ribosomal protein L51/S25/CI-B8
family protein | chr3:22033129-22034149 FORWARD LENGTH=749
Length=749
Score = 621 bits (336), Expect = 2e-177
Identities = 375/394 (95%), Gaps = 1/394 (0%)
Strand=Plus/Plus
Query 241 GGAATAGAAATGAAAGGGTGGTGTGTGTGAAGAACATGGATCCTGAAGAAGTGCTTCTGA 300
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 356 GGAATAGAAATGAAAGGGTAGTGTGTGTGAAGAACATGGATCCTGAAGAAGTGCTTTTGA 415
Query 301 ATGCAACAAGGCTGAGAAACTCGCTTGGAAGGAAAGTGGTTAAACTGAGGACCAGACATG 360
||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 416 ATGCAACGAGGCTGAGGAACTCGCTTGGACGGAAAGTGGTTAAACTGAGGACCAGACATG 475
Query 361 TCACCAAACACCCCAGTGTTCAAGGCACCTGGACAACCGCTGTCAAATTCTGAGACTTTC 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 476 TCACCAAACACCCCAGTGTTCAAGGCACCTGGACAACTGCTGTCAAATTCTGAGACTTTC 535
Query 421 CTGCTAAATAGTTTGCAGGTTTTCTTCTTCTAGCTGTTGAATCGAATGTTGCAAGTATCA 480
||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 536 CTGCTAAATTGTTTGCAGGTTTTCATCTTCTAGCTGTTAAATCGAATGTTGCAAGTATCA 595
Query 481 GGATTGATCTTTTATCTATATTGCAATCCCAAGTTGTTTGTACCGTCTGTGACTT-GGAC 539
|||||| || ||||||| |||||||| |||||||||||||||||||||||||||| ||||
Sbjct 596 GGATTGGTCGTTTATCTGTATTGCAACCCCAAGTTGTTTGTACCGTCTGTGACTTGGGAC 655
Query 540 AGAGATTTAGGCTTCAAATGTTTTGCAGTTCATGCAATGTTTGAATTTTGTCTTGTCCTT 599
| |||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 656 AAAGATGTAGTCTTCAAATGTTTTGCAGTTTTTGCAATGTTTGAATTTTGTCTTGTCCTT 715
Query 600 CTGGTTGAGTCTATAATAAGATTACACAAGGGTT 633
||||||||||||||||||||||||||||||||||
Sbjct 716 CTGGTTGAGTCTATAATAAGATTACACAAGGGTT 749
Score = 387 bits (209), Expect = 9e-107
Identities = 219/224 (98%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 18 TCGGTTAGGGTTTTTGTTTCTCTTACCGAGATTCAAATGGCGCTTAGAGGAGTTTGGCAG 77
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 TCGGTTAGGGTTTTAGTTTCTCTTACCGAGATTCAAATGGCGCTTAGAGGAGTTTGGCAG 111
Query 78 CTCAAGAAACTTGTTGTGAGCTACTGTAATTGGGGTGGTAGCAGTAGAGGCATCAGAGCC 137
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 CTCAAGAAACTCGTTGTGAGCTACTGTAATTGGGGTGGTAGCAGTAGAGGCATCAGAGCC 171
Query 138 TTTATGGAATCAGAATTGCCTGCTCTAAAGGAGAAAAACCCGCAGCTTGAAGTGGTTACC 197
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 172 TTTATGGAATCAGAATTGCCTGCTCTAAAGGAGAAAAACCCGCAGCTCGAAGTAATTACC 231
Query 198 GAGCTTTCACGGGGACAACATCCTTATTTGAAGGGCATTTACAG 241
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 GAGCTTTCACGGGGACAACATCCTTATTTGAAGGGCATTTACAG 275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30894000405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5