BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486432
Length=1985
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59670.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 3038 0.0
> AT3G59670.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G37440.2);
Has 77 Blast hits to 77 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:22039476-22042713
FORWARD LENGTH=2054
Length=2054
Score = 3038 bits (1645), Expect = 0.0
Identities = 1880/1990 (94%), Gaps = 29/1990 (1%)
Strand=Plus/Plus
Query 22 cttcttctcttactctcttctcgccgcaaaacctcacttactctctctttctctctggat 81
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 36 CTTC-TCTCTTACTCTCTTCTCGCCGCAAAACCTCACTTGCTCTCTCTTTCTCTCTGGAT 94
Query 82 cttcATCGGGGACCATCACCCGGGTTTTAACTTACGGTTTCCAATGTGAAATAAGAGTGT 141
||| |||||||| ||| ||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 95 CTTTATCGGGGAGCATTACCCGCGTTTTAACTTACGGTTTCCAATGTGAACTAAGAGTGT 154
Query 142 GTTATCAGTTGTGATGACTGTGGCTGAACCACATATGGAGCTCAATC-AAGAAAGTGAA- 199
||||||||||||||||||||||||||||||||| ||||||||||| | |||||||| ||
Sbjct 155 GTTATCAGTTGTGATGACTGTGGCTGAACCACACATGGAGCTCAA-CGAAGAAAGT-AAG 212
Query 200 CAATTCAATGCTGAGAAGTTGTCGCCAAAGAAAGAGCAAAGTCCTGGAGGAGATCATGAA 259
|||||| ||| ||||| ||| |||||||||||||||||||||||||||||||| ||| ||
Sbjct 213 CAATTCGATGTTGAGAGGTTATCGCCAAAGAAAGAGCAAAGTCCTGGAGGAGAACATAAA 272
Query 260 GAATGTGGTCTTACCAGTGCTAATACAAGTGAGGAAACTGTGACTTCAGTTTCTGGTGGT 319
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 273 GAATGTGGTCTTACCAGTGCTAATACAAGTGAGGAAACTGTTACTTCAGTTTCTGGTGGT 332
Query 320 GAGGAATTGGATGTTGATATAGTTGAATCTGATGAAAACAACACATCCACCACTGATGAG 379
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 333 GAGGAATTGGATGTTGATATAGTTGAATCTGATGAAAACAAGACTTCCACCACTGATGAG 392
Query 380 GACCCTAACGCTACTGAATACTCAAGCTCATTTTCCGACACTGCATCTGAGAATGCTGAC 439
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 GACCCGAACGCTACTGAATACTCAAGCTCATTTTCCGACACTGCATCTGAGAATGCTGAA 452
Query 440 ATGTTGCTTGATGGACTAACCGGAGAAGCTGAGGTCGAATCTCATTATTGGGATGAAACC 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 ATGTTGCTTGATGGACTAACCGGAGAAGCTGAGGTCGAATCTCATTATTGGGATGAAACC 512
Query 500 GATCTAGGACCTGCTTATGATTCTTTTAGCAGCATTTTTCATTTTAGGAAGAAAAGGCTA 559
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 GATCTAGGTCCTGCTTATGATTCTTTTAGCAGCATTTTTCATTTTAGGAAGAAAAGGCTA 572
Query 560 ACTAATCACTGGAGGAGATTTATCAGGCCACTGATGTGGCGATCCAAGTGGGTTGAGTTA 619
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 573 ACTAACCACTGGAGGAGATTTATCAGGCCACTGATGTGGCGGTCCAAGTGGGTTGAGTTA 632
Query 620 AGAATTAGAGAGTTAGAGTCTCGGGCATTGGAATATCCGAAAGAGCTTGAGTCATACGAT 679
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||
Sbjct 633 AGAATTAGAGAGTTAGAGTCTCGGGCATTAGAATATCCGAAAGAGCTTGAGTTATATGAT 692
Query 680 CAAGAAAAGCTTGAAGCTAATATTGATCCGTCTGTGTTGGAAAGTTGTGGTGAGGGGATA 739
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 693 CAAGAAAAGCTTGAAGCTAATATTGATCCATCTGTGTTGGAAAGTTGTGGTGAGGGGATA 752
Query 740 AAGTCATTGCCTTTTTCTAATCCGTGTTACaaaaaaaGAGCAGCAAAGAGGAGAAGAAAG 799
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 753 AAGTCATTGCCTTTCTCTAATCCGTGTTACAAAAAAAGAGCAGCAAAGAAGAGAAGAAAG 812
Query 800 CGTAAGAAGGTTGAGAGCACAGATGATATAACTTCATATATGGCATGTCACAACCTCTTT 859
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 813 CGTAAGAAGGTCGAGAGCACAGATGATATAGCTTCATATATGGCATGTCACAACCTCTTT 872
Query 860 TCTTATATCGAGACCAAGAGATTGAGCTCAGATGGAATGGGATTGGCTGATGACTTTGGT 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 TCTTATATCGAGACCAAGAGATTGAGCTCAGATGGAATGGGATTGGCTGATGACTTTGGT 932
Query 920 GATGCCAAAGATCCACAAAGTGATTCAAAGGAACCGGTAGACTTAGATGACGATGACTCA 979
||||| |||||||||| ||||||||||| |||||||||||||||||||||| |||||||
Sbjct 933 GATGCAAAAGATCCACGGAGTGATTCAAATGAACCGGTAGACTTAGATGACGCTGACTCA 992
Query 980 CTTTTTCATCACCGAGAAGGAGATAATGTCTTAGAAGAGGTTCTCTGGAAAATCGAGCTG 1039
||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||
Sbjct 993 CTTTTTCATCACCGAGATGGAGATAGTGTCTTAGAAGAAGTTCTCTGGAAAATCGAGCTG 1052
Query 1040 GTGCATTCGCAAGTTCATAGATTGAAAACCCAAGTTGATGTTGTGATGTCCAAGAACGCA 1099
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1053 GTGCATTCACAAGTTCATAGATTGAAAACCCAAGTTGATGTTGTTTTGTCCAAGAACACA 1112
Query 1100 GCAAGGTTCTCTTCCTCAGAGAATCTGAGCCTTCTTGCTGCAAGTTCTGCGCCTAGCCCA 1159
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1113 GCAAGGTTCTCTTCCTCAGAGAATCTGAGCCTTCTTGCTGCAAGTTCTGCACCTAGCCCA 1172
Query 1160 ACGGTTTCTGCTGGAGGAAATGGAGATGTGATCTCCATTGGAGCAATTTACAACGCTTCA 1219
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1173 ACGGTTTCTGCTGGAGGAAATGGAGATGTGATCTCCTTTGGAGCAATTTACAATGCTTCA 1232
Query 1220 CAGCATATGGCAGATG-T--TCTTGGTGATTTAGTTTTCTCATCTGAAGGAGTGATTTCG 1276
||||||||||||||| | |||||||||| ||||||||||||| |||||||||||||||
Sbjct 1233 CAGCATATGGCAGATTATGGTCTTGGTGATATAGTTTTCTCATCCGAAGGAGTGATTTCG 1292
Query 1277 AGCTATGGGGATGCGTTTCATATTCCTGACATAATTGAAAGTACTGTTGGTCTTTTCGCC 1336
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1293 AGCTATGGGGATGCGTTTCATATTCCTGACATTATTGAAAGCACTGTTGGTCTTTTCGCA 1352
Query 1337 GACGCTGATGTTACTTTACATCATCCCCAGATTGGAGATTCTTGTGAAGATATTTTGGAT 1396
|| ||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1353 GATGCTGATGTTACATTACATCATCACCAAATTGGAGATTCTTGTGAAGATATTTTGGAT 1412
Query 1397 AATATCTTGATTCGAAATGGAGTGGCTGAAGAAATGAATTCTGATTTGATGGAAACTAGT 1456
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1413 AACATCTTGATTCGAAATGGAGTGGCTGAAGAAATGAATGGTGATTTGATGGAAACTAGT 1472
Query 1457 TGCCATGACGAAGCTGAGAAAGCAGAGGAAGGAGAAGGAACCAGTGTGCCGCCATTGCAG 1516
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1473 TGCCATGACGAAGCCGAGAAAGCAGAGGAAGGAGAAGGAACCAGTGTCCCGCCGTTGCAG 1532
Query 1517 CAAACTGAAGAGACAGAACAATATAGCCAAGAAGAGAAATCTTTGGTACTACAGGGCCGT 1576
||||||||||| |||||| |||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1533 CAAACTGAAGAAACAGAAGAATATAACCAAGAAGAGAAATCTTTGGTACTACAAGGCCGT 1592
Query 1577 GAAGATTCGGTTCTTAGATCATGCTTAGCTTCTGAAATGCTTGTTCCTAGGAACAAAAGG 1636
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1593 GAAGATTCGGTTCTTAGATCATGCTTAGCCTCTGAAATGCTTGTTCCTAGGAACAAAAGG 1652
Query 1637 ACAAGAGGTGGAGAACGTAAAGCAAGTTCTTGGTGCAAGAAACATCTCAGCGATCCTGAA 1696
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1653 ACAAGAGGTGGAGAACGTAAGGCAAGTTCTTGGTGCAAGAAACATCTCAGCGATCCTGAA 1712
Query 1697 AGCCAGTGATTGATGAAAAAA-CTCAGTAAGCCTTTGATGATCAGAGTCTTTCCTTTTTG 1755
||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||
Sbjct 1713 AGCCAGTGATTGATGAAAAAAACTCAGTAAGCTTTTGATGATCAGAGTCTTTCCTCTTTG 1772
Query 1756 AATCTCCCTTCAATCAGAGCGACTATTT-CTACTTCAATCTTTTGTTTCTAAACATTCTC 1814
|||||||||| ||||| ||| ||||||| |||||||||| |||||||||| |||||||||
Sbjct 1773 AATCTCCCTTAAATCACAGCTACTATTTTCTACTTCAATATTTTGTTTCTGAACATTCTC 1832
Query 1815 TTAGGTTTTTCTTTATTTCTGCAGAATCTGTGTGTTCACAGA-----TTT--TG-T-C-- 1863
|||| ||||||||||||||||||||||||||||||||||||| ||| | | |
Sbjct 1833 TTAGATTTTTCTTTATTTCTGCAGAATCTGTGTGTTCACAGAGAACATTTACTTCTTCTT 1892
Query 1864 -------ATATCATTTTCTTCTTTAGCTTCTTTTCTGTTTTATGATGATGAAAAGTTGGA 1916
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1893 TTTTTTCATATCATTTTCTTCTTTAGCTTCTTTTCCGTTTTATGATGATGAAAAGTTAGA 1952
Query 1917 GAGATGACACAAACTGTGTATAATAAAG-TTTAGATTGTAGTTTTATCATCATCTTCGTT 1975
| || ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||
Sbjct 1953 GTGAAGACACAAACTGTGTATAATAAAGCTTTAGATTGTAGTTCTATCATCTTCTTCGTT 2012
Query 1976 TCACTATTAT 1985
||||||||||
Sbjct 2013 TCACTATTAT 2022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98342867655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5