BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486437
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59710.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1369 0.0
> AT3G59710.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr3:22054937-22057156 REVERSE LENGTH=1192
Length=1192
Score = 1369 bits (741), Expect = 0.0
Identities = 843/893 (94%), Gaps = 4/893 (0%)
Strand=Plus/Plus
Query 48 TTACGGCATTATTCACGAATGGTGGTCGGAAGAAACAACAGCGGTGGTGACCGGAGCAAA 107
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 51 TTACGGCATTATTCACGAGTGGTGGTCGGAAGAAACAACAGCGGTCGTGACCGGAGCAAA 110
Query 108 CAAAGGTATAGGCTTTGCGGTGGTGAAGAGGTTATTAGAGCTTGGACTAACTGTCGTTTT 167
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 111 CAAAGGTATAGGTTTTGCGGTGGTGAAGAGGTTATTAGAGCTTGGACTAACTGTAGTTTT 170
Query 168 AACCGCCCGAAACGCCGAAAATGGAATCCAAGCCGCCGATTCCCTCCGCCTCACTGGCTT 227
||| |||||||||||||||||||||| ||||||||| || |||||||||| || ||||||
Sbjct 171 AACTGCCCGAAACGCCGAAAATGGAAGCCAAGCCGCTGAATCCCTCCGCCGCATTGGCTT 230
Query 228 TAGAAACGTTCATTTTGGCTGCCTCGACATCTCCGATCCTTCTTCCATCGCGGCCTTCGC 287
| |||||||||||||| |||||||||||||||||||||||||||||||||| || |||||
Sbjct 231 TGGAAACGTTCATTTTTGCTGCCTCGACATCTCCGATCCTTCTTCCATCGCCGCGTTCGC 290
Query 288 CTCCTGGTTCCGTCACAACTTCGGAGTACTCGACATTCTGGTGAACAATGCGGCCGTTTC 347
||| |||||| ||| |||||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct 291 CTCTTGGTTCGGTCGCAACTTAGGAATACTCGACATTCTGGTGAACAATGCCGCCGTTTC 350
Query 348 ATTTAACGCGGTAGGCGAGAATTTAATCAATGAGCCAGAGACAATTATCAAGACCAATTT 407
|||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 351 ATTTAACGCGGTGGGCGAGAATTTAATCAAAGAGCCAGAGACAATCATCAAGACCAATTT 410
Query 408 CTACGGTCCCAAGCTTTTAACCGAGGCGCTTTTGCCGTTGTTTCGGCGTTCCGTCTCCGT 467
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 411 CTACGGTGCCAAGCTTTTAACGGAGGCGCTTTTGCCGTTGTTTCGGCGTTCCGTCTCCGT 470
Query 468 TAGCCGCATCCTTAACATGAGTTCAAGGCTTGGCACATTAAATAAACTGAGAAGCCCTAG 527
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TAGTCGCATCCTTAACATGAGTTCAAGGCTTGGCACATTAAATAAACTGAGAAGCCCTAG 530
Query 528 TATAAGACGAATCCTAGAGAGTGAAGACCTTACCAATGAACAAATCGATGCGACGGTGAC 587
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 531 TATAAGACGAATCCTAGAAAGTGAAGACCTTACCAATGAACAAATCGATGCGACATTGAC 590
Query 588 TCAATTTCTGCAGGACGTGAAAAGCGGGACTTGGGAGAAGCAAGGATGGCCAGAGAACTG 647
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 591 TCAATTTCTGCAGGACGTGAAGAGCGGGACTTGGGAGAAGCAAGGATGGCCGGAGAACTG 650
Query 648 GCCAGACTACGCCATCTCAAAGATGGCCTTAAACGCGTACTCGAGGGTTTTGGCTCGACG 707
||| |||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct 651 GCCGGACTACGCCATCTCAAAGTTGGCCTTAAACGCTTACTCTAGGGTTTTGGCTCGACG 710
Query 708 TTACGACGGCAAAAAACTAAGTGTGAATTGTTTATGCCCTGGTTTCACTCGTACGTCTAT 767
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TTACGACGGCAAAAAACTGAGTGTGAATTGTTTATGCCCTGGTTTCACTCGTACGTCTAT 770
Query 768 GACCGGTGGTCAGGGGACTCACACGGCGGATGAGGCTGCTGCCACTGTAGCCAAGTTGGT 827
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 771 GACCGGTGGTCAGGGGACTCACACGGCGGATGAGGCTGCTGCCATTGTAGCCAAGTTGGT 830
Query 828 -TCTGATTCCTCCGGAGAAGCTGACTTCCGGAAAGTTCTATATATGCTTAGAGCCTAAGA 886
| || ||||||||||||||||| || |||||||||||||||||||| ||||| |||| |
Sbjct 831 GT-TGCTTCCTCCGGAGAAGCTGGCTACCGGAAAGTTCTATATATGCGTAGAGTCTAA-A 888
Query 887 AAA-TTATTGCCAAGTTGTGACTCAATTATAGCTTTCTTCACATACACGCATA 938
||| ||||| |||||||||||||| ||||||||||||||||| | ||||||||
Sbjct 889 AAACTTATTTCCAAGTTGTGACTCTATTATAGCTTTCTTCACCTGCACGCATA 941
Score = 163 bits (88), Expect = 3e-39
Identities = 123/139 (88%), Gaps = 5/139 (4%)
Strand=Plus/Plus
Query 988 TTGATAAAAATAATGAAATTAGGGTTTCTTCTTCTTCCTCCGCAGCCGCTTCTGTTTCTT 1047
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1035 TTGATAAAAACAATGAAATTAGGGTTTCTTCTTCTTCCTCTGCAGCCGCTTCTGCTTCTC 1094
Query 1048 CTATATAAATCAGTAAAGGCTTGGATTTTTAACAATCAATCATCTACAAGTTCGATTCCA 1107
|||||||||| |||||||||||||| | | ||||||||||| ||||| |||||| |
Sbjct 1095 CTATATAAATAAGTAAAGGCTTGGAC----A-CTATCAATCATCTTCAAGTCCGATTCAA 1149
Query 1108 AGTCCTAGTTTCTTTTCTT 1126
|||| ||||||||||||||
Sbjct 1150 AGTCGTAGTTTCTTTTCTT 1168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56074008765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5