BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486444
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59800.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1393 0.0
> AT3G59800.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G43795.2);
Has 15361 Blast hits to 8061 proteins in 537 species: Archae
- 2; Bacteria - 622; Metazoa - 7561; Fungi - 1246; Plants
- 920; Viruses - 49; Other Eukaryotes - 4961 (source: NCBI
BLink). | chr3:22094437-22096358 REVERSE LENGTH=905
Length=905
Score = 1393 bits (754), Expect = 0.0
Identities = 845/888 (95%), Gaps = 9/888 (1%)
Strand=Plus/Plus
Query 1 TCTCTCTCTCGCTTGGTTTCTCTACAGATCCCTAAATCCTCTCCCTTTGGACCGTTAAT- 59
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 18 TCTCTCTCTCGTTTGCTTTCTCTACAGATCCCTAAATCCTCTCCCTTTGGACCGTTAATC 77
Query 60 TCCCAAACCCTAGATTTAATC-AA-AA-TCCTCACTCAATCTCTCTAAACTCTCTTTCTC 116
|||||||||||||||| | | || || |||| ||||||||||||||| ||||||||||
Sbjct 78 CCCCAAACCCTAGATTTTA-CAAACAATTCCT--CTCAATCTCTCTAAATTCTCTTTCTC 134
Query 117 CTGCAAGAAATTTGGGGACTTTTTCTTGTGGGTTTAA--TTGTATCAGCTATGGGGAAGA 174
||||||| |||||| ||||| ||||||||||| | || || ||| ||||||||||||||
Sbjct 135 CTGCAAGGAATTTGCGGACTGTTTCTTGTGGGGTAAATCTTCTATTAGCTATGGGGAAGA 194
Query 175 ATCAAGCTTACAAGGCTATGCAGAGATCTAGGGTTGGTTCCAGCTCCGCCCAGCCGGATG 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 ATCAAGCTTACAAGGCTATGCAGAGATCTAGGGTTGGTTCCAGCTCCGCCCAGCCGGATG 254
Query 235 AAGTTGAAGACGGAATGGTGGATGGTTCATTTCATACACCAGAGTGGCATGCGGCTCGTT 294
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 AGGTTGAAGACGGAATGGTGGATGGTTCATTTCATACACCAGAGTGGCATGCGGCTCGTT 314
Query 295 TGGCTAGCCTCAAGACTACACATACTATTACATGGGAAGAGTATAAGCAGAAGCAAAAGG 354
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 315 TGGCTAGCCTCAAGACTACACATACTATTACCTGGGAAGAGTATAAGCAGAAGCAAAAGG 374
Query 355 AAGAAGAAATGAAAAAGGGAGAACTTGAAGCAGATACTGATAAACTGATGCGTGAGTATA 414
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 375 AAGAAGAATTGAAAAAGGGAGAACTTGAAGCAGATACCGATAAACTGATGCGTGAGTATA 434
Query 415 GAGCTCAGCTCGATGCAGAAAGGTCGTTGAAACTCTCCAAAGGAAGGAACTATTCTAGTG 474
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 GAGCTCAGCTGGATGCAGAAAGGTCGTTGAAACTCTCCAAAGGAAGGAACTATTCTAGTG 494
Query 475 ATAAGTCCCGTaaagataagaaagatagagattcaaagaagaagaaaagcaaaaagagaa 534
||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 495 ATAAGTCACGAAAAGATAAGAAAGACAGAGATTCAAAGAAGAAGAAAAGCAAAAAGAGAA 554
Query 535 agCATTATTCATCCTCAGAGTCATCATCTAGTAGTGATGAAGATGAATCTAGAAGATCAA 594
|||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 555 AGCATTATTCGTCCTCAGAGTCGTCATCTAGCAGTGATGAAGATGAATCTAGAAGATCAA 614
Query 595 GATCAAGTTCGAAACGATCAAAGAAGGATAGGAAGCACAAGTCCAGCAGAGACAAACACT 654
|||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 615 GATCAAGTTCGAAAAGATCAAAGAAGGAGAAGAAGCACAAGTCCAGCAGAGACAAACACT 674
Query 655 CTAGCAAAAGTAAAGACGAAACCGATGGCCCTGTACCACTCTCTAAATTCTTTGGCAATC 714
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 675 CTAGCAAAAGTAAACACGAAACCGATGGCCCTGTACCACTCTCTAGATTCTTTGGCAATT 734
Query 715 TGAAGAATTGACACAAGCAAAACTGCAAATGAACTATTACAAAGAGTAAGATTGTCTTCA 774
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 TGAAGAATTGACAAAAGCAAAACTGCAAATGAACTATTACAAAGAGTAAGATTGTCTTCA 794
Query 775 ATCAAAATACTCAAATTAGGATATGATTGCTTTCTTCCTTGTTGCAATGTTATATTTTTG 834
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 ATCAAAATACTCAAAGTAGGATATGATTGCTTTCTTCCTTGTTGCAATGTTATATTTTTG 854
Query 835 ACAATAGCTCATGTATTATTATTTGTTGGATTGAGAGTCGCAATAATG 882
|||||||||||||||||| ||||||||||||||| ||||||||| |||
Sbjct 855 ACAATAGCTCATGTATTAATATTTGTTGGATTGAAAGTCGCAATGATG 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43050663979
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5