BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486445
Length=469
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59810.1 | Symbols: | Small nuclear ribonucleoprotein famil... 643 0.0
AT2G43810.1 | Symbols: | Small nuclear ribonucleoprotein famil... 315 3e-85
> AT3G59810.1 | Symbols: | Small nuclear ribonucleoprotein family
protein | chr3:22096515-22097908 FORWARD LENGTH=625
Length=625
Score = 643 bits (348), Expect = 0.0
Identities = 440/480 (92%), Gaps = 23/480 (5%)
Strand=Plus/Plus
Query 1 AAATAATAAAA-CCCTTTAGGACCAATTCATTATTTCTTCG------C--TCTCTC--TG 49
||||||||||| ||| |||||||| |||| ||||||||||| | |||||| ||
Sbjct 1 AAATAATAAAAGCCC-TTAGGACCGATTCGTTATTTCTTCGCTCTCTCTTTCTCTCTGTG 59
Query 50 TCTCGCACTCGAGTAGGTGGTCAGTTAAATAAAGGATCGTGCTTAGAAGAAGATGAGTGG 109
||||| |||||||||||| ||||||| |||||||||| |||| || |||||||||||
Sbjct 60 TCTCGTACTCGAGTAGGT-CTCAGTTACGTAAAGGATCGAGCTT--AA-AAGATGAGTGG 115
Query 110 TGTTGGAGAGAAAGTTTCTGGAACGACAAAGACACCTGCAGATTTCCTCAAATCCATCCG 169
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 AGTTGAAGAGAAAGTTTCTGGAACGACAAAGACACCTGCAGATTTCCTCAAATCCATCCG 175
Query 170 TGGGAGACCCGTTGTTGTCAAGCTCAATTCTGGTGTTGATTATCGAGGCATTCTTACTTG 229
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 176 TGGGAGACCCGTTGTTGTCAAGCTCAATTCTGGTGTTGATTATCGAGGCACTCTTACTTG 235
Query 230 TCTTGATGGGTATATGAACATAGCAATGGAGCAGACAGAGGAGTATGTAAATGGGCAGCT 289
||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 236 TCTTGATGGATATATGAACATAGCAATGGAGCAGACGGAGGAGTATGTAAACGGGCAGCT 295
Query 290 CAAGAACAAATATGGTGATGCCTTTATCCGTGGAAACAACGTTCTTTACATCAGTACGGT 349
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 296 CAAGAACAAATATGGTGACGCCTTTATCCGTGGAAACAACGTTCTTTACATCAGTACAGT 355
Query 350 AAAGATGACTGTAGCGGACGGAGCCTAGGCCCATCATGATACATCATCAGCAACAACAAC 409
||| ||||||||||| |||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 356 AAACATGACTGTAGCAGACGGAGCCTAGGCCCATCATGAT-CATCA--A-CAACAACAAC 411
Query 410 ATCAGTGGTCATGTTATGGCTGCCATTTTTGTTGTCTTCTTCTACCTCATATTAAAAGAG 469
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 A---GTGGTCATGTTATGGCTGCCATTTTTGTTGTCTTCTTCTACCTCATATTAAAAGAG 468
> AT2G43810.1 | Symbols: | Small nuclear ribonucleoprotein family
protein | chr2:18149311-18151295 FORWARD LENGTH=842
Length=842
Score = 315 bits (170), Expect = 3e-85
Identities = 222/248 (90%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 96 AAGAAGATGAGTGGTGTTGGAGAGAAAGTTTCTGGAACGACAAAGACACCTGCAGATTTC 155
|||||||||||||| ||||||||||||| ||||||||| || ||||||||||| ||||||
Sbjct 145 AAGAAGATGAGTGGAGTTGGAGAGAAAGCTTCTGGAACAACTAAGACACCTGCTGATTTC 204
Query 156 CTCAAATCCATCCGTGGGAGACCCGTTGTTGTCAAGCTCAATTCTGGTGTTGATTATCGA 215
| ||||| |||||||| | ||| ||||||||||||||||| ||||||||||||||||||
Sbjct 205 TTGAAATCTATCCGTGGTAAACCAGTTGTTGTCAAGCTCAACTCTGGTGTTGATTATCGA 264
Query 216 GGCATTCTTACTTGTCTTGATGGGTATATGAACATAGCAATGGAGCAGACAGAGGAGTAT 275
||||||||||||||||||||||| ||||||||||| ||||||||||| || || ||||||
Sbjct 265 GGCATTCTTACTTGTCTTGATGGATATATGAACATCGCAATGGAGCAAACCGAAGAGTAT 324
Query 276 GTAAATGGGCAGCTCAAGAACAAATATGGTGATGCCTTTATCCGTGGAAACAACGTTCTT 335
|||||||| ||||| ||||||| |||||| || || ||| ||||||| ||||| ||||||
Sbjct 325 GTAAATGGCCAGCTGAAGAACACATATGGCGACGCTTTTGTCCGTGGCAACAATGTTCTT 384
Query 336 TACATCAG 343
||||||||
Sbjct 385 TACATCAG 392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22303961268
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5