BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486449
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59840.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 994 0.0
> AT3G59840.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED
IN: 23 plant structures; EXPRESSED DURING: 13 growth stages;
Has 72 Blast hits to 72 proteins in 12 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22105522-22106198
REVERSE LENGTH=677
Length=677
Score = 994 bits (538), Expect = 0.0
Identities = 639/684 (93%), Gaps = 22/684 (3%)
Strand=Plus/Plus
Query 1 AAACCCTAATTCCTCAGATTACAATTTGAGAACCACCGATTC--GAGTAGCTATGGGGAT 58
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1 AAACCCTAATTCCTCAGATTACAATTTGAGAACCACCGATTCGAGAGTAGCAATGGGGAT 60
Query 59 TCTATCATGGTTCACGGGAAGTCCTAAGCCGTCACAGTCCGAGACATCTAAGCCGGAGAT 118
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 61 TCTATCATGGTTCACGGGAAGTCCTAAGCCATCACAGTCCGAGACGTCTAAGCCGGAGAT 120
Query 119 GATACAGATGCCGAAATCAGAAACTCCAGCTCCGGGGATGAACGGAGCCATAGAAGTTCC 178
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 121 GATTCAGATGCCGAAATCAGAAACTCCAGCCCCGGGGATGAATGGAGCCATAGAAGTTCC 180
Query 179 TCGGCCCGATCGCGCGACGGTTTTCGAGTTCGGCTCCGTAGCGGCCACCGGAGACAGAGT 238
||||||||||||||||||||||||||||||||||||||| || || || |||||||||||
Sbjct 181 TCGGCCCGATCGCGCGACGGTTTTCGAGTTCGGCTCCGTTGCTGCTACTGGAGACAGAGT 240
Query 239 CACTCTCGCGGGATACTGTCCCGTTTCCGACGATCTCGAACCTTGCCGCTGGGAGATTCT 298
||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 241 CACTCTCGCTGGTTACTGTCCCGTTTCCGATGATCTCGAACCTTGCCGTTGGGAGATTCT 300
Query 299 TCCCGCCGACGGCAAAGACGCTCCACAGTTTCGCGTCGTCTTCTGAAGAATCAATTAATA 358
|||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||
Sbjct 301 TCCCGCCGACGGCAAAGACGCTCCACAGTTTCGCGTCGTCTTCTGAGGAATCAGTCAATA 360
Query 359 ATCTCTAGAAGATGTAAAATTGTTCAATCTCGTCGTTGATAATTGTATTTGGTCTGGTAA 418
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCTGTAGAAGATGTAAACTTGTTCAATCTCGTCGTTGATAATTGTATTTGGTCTGGTAA 420
Query 419 TGTCATCTCTTTCATTTGAAATCGAACAAGTTCTC--ATCTTTAATTAGTGCAGTGATGA 476
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 421 TGTCATCTCTTTCATTTGAAATCGAACAAGTTCTCTCATCTTTAATTAGTGCAGTGATGA 480
Query 477 TTAATTTTGCTATATTAGACTGGTTATAACAACAAA--TGTCAACGTTTGATTTAATATA 534
|||||||||||| ||| ||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 481 TTAATTTTGCTAAATTGGACTGGTTATAACAACAAAAATGTCAACGTTTGAATTAATATA 540
Query 535 AACCAATCTCCAGGTTGTATTTTCATATTAAATTAAGCTTCTTTTTAAGTTATCAATGGC 594
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 541 AACCAATCTCCAGGTTGTATTTTCATATTAAATTAAGCTT------A-GTTATCAATGGC 593
Query 595 GTTGGTTAATTATACAAGTT-T--------CATCTAATTATGTATGGATCCAATAAATAA 645
|||||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 594 GTTGGTTAATTATATAAGTTCTAATTAGTTCATCTAATTATGTATGGATCCAATAAATAA 653
Query 646 AGAGATTAGAAAATAGTGATTACC 669
||||||||||||||||||||||||
Sbjct 654 AGAGATTAGAAAATAGTGATTACC 677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32350790668
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5