BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486450
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59850.1 | Symbols: | Pectin lyase-like superfamily protein... 2156 0.0
> AT3G59850.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:22109164-22111609 REVERSE LENGTH=1389
Length=1389
Score = 2156 bits (1167), Expect = 0.0
Identities = 1319/1393 (95%), Gaps = 8/1393 (1%)
Strand=Plus/Plus
Query 1 CACCACTTTCCAActtctccctctatctctcactctcaaaacaatgccttcttcacttct 60
||||||||| |||||||||||||||||||||||| ||||| |||||| ||||||||||||
Sbjct 1 CACCACTTTTCAACTTCTCCCTCTATCTCTCACTTTCAAAGCAATGCATTCTTCACTTCT 60
Query 61 cacagttcttctctttctcctctcGATCCCATCGTCCTCAGCTCAAACCTACAATATCCT 120
|| |||||| ||||||||||||||| || |||| ||||||||||||||||||||||||||
Sbjct 61 CATAGTTCTCCTCTTTCTCCTCTCGGTCTCATCTTCCTCAGCTCAAACCTACAATATCCT 120
Query 121 CTCTTACGGAGCCAAACCCGACGGTAAAACCGACTCCACCAAGGCCTTAACCG-CCGTGT 179
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||| || |||
Sbjct 121 CTCTTACGGAGCCAAACCCGACGGCAAAACCGACTCGACCAAGGCCTTTACCGTCC-TGT 179
Query 180 GGGCCAAAGCCTGCGCCTCGGTCAAACCGGTAACCATTTTGGTACCTAAGGGACGATTTT 239
|||||||||| || || |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 180 GGGCCAAAGCATGTGCATCGGTCAAACCGGTCACCATTTTGGTACCTAAGGGACGGTTTT 239
Query 240 TCTTAAGAAGCATTATTTTTGACGGTGCCAAATGTAAACGCAAGTCCGTCACGTTCCGTA 299
| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 240 TGTTAAGAAGCATTATTTTTGACGGTTCCAAGTGTAAACGCAAGTCCGTCACGTTCCGTA 299
Query 300 TCCAAGGTACACTTGTGGCTCCATCGGATTATCGAATCATCGGTAAGGAAAATTATTGGA 359
||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||
Sbjct 300 TCCAAGGTACACTTGTGGCTCCATCGGATTATCGAGTCATCGGTAAAGAAAACTATTGGA 359
Query 360 TTTTATTCCAGCATCTCGACGGCCTCTCTGTGTACGGTGGAGTTCTTGACGCTCAGGGAA 419
|||| |||||||||||||||||| ||||||| ||||| |||||||||||||| ||||||
Sbjct 360 TTTTGTTCCAGCATCTCGACGGCATCTCTGTCTACGGCGGAGTTCTTGACGCCCAGGGAG 419
Query 420 CTTCTCTTTGGTCTTGCAAAAAGTCCGGCAAGAATTGCCCGAGTGGCGCCACGAGCATAG 479
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTTCTCTATGGTCTTGCAAAAAGTCCGGCAAGAATTGCCCGAGTGGCGCCACGAGCATAG 479
Query 480 GGTTTCAGAGCTCAAGCAACGTGGTGATCTCCGGGCTGACGTCA-TTAAACAGTCAGATG 538
|||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 480 GGTTTCAGAGCTCACGCAACGTGGTGATCTCCGGGCTGACGTCACTT-AACAGTCAGATG 538
Query 539 TTTCACGTCGCGATTAACGGCTGCCGTAACGTGAAGCTCGAAGGAGTCAAAGTTTCGGCT 598
|||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| ||
Sbjct 539 TTTCACGTCGCGATTAACGGCTGCAGTAACGTAAAGCTCGACGGAGTCAAAGTTTCTGCA 598
Query 599 GACGGAAACAGTCCAAACACTGACGGAATCCACGTGCAGTCATCATCCACCGTGTCCATC 658
||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||
Sbjct 599 GACGGAAACAGTCCAAACACTGATGGGATCCACGTGCAGTCATCATCTACCGTCTCCATC 658
Query 659 CTCAACTCCAAAATCTCCACCGGCGATGATTGTGTCTCCATCGGTCCCGGCACTAACGGC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTCAACTCCAAAATCTCCACCGGCGATGATTGTGTCTCCATCGGTCCCGGCACTAACGGC 718
Query 719 CTCTGGATCGAGAACGTCGCTTGTGGTCCTGGCCATGGTATCAGCATTGGGAGCTTGGGA 778
|||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 719 CTCTGGATCGAGAATGTCGCTTGTGGCCCTGGCCATGGGATCAGCATTGGAAGCTTGGGA 778
Query 779 AAAGAAAGTGTGGAGGCAGGTGTACAAAACATAACAGTGAAAACGGCGACGTTTACAGGA 838
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AAAGAAAGTGTGGAGGTAGGTGTACAAAACATAACAGTGAAAACGGCGACGTTTACAGGA 838
Query 839 ACAGAGAATGGGGTGAGAATAAAGTCATGGGCCAGGCCCAGTAATGGATTTGCTAAGAAT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ACAGAGAATGGGGTGAGAATAAAGTCATGGGCCAGGCCCAGTAATGGATTTGCTAAGAAT 898
Query 899 ATCCGTTTCCAACATTGTGTTATGAACAACGTACAAAACCCAATCGTTATTGACCAAAAC 958
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 899 ATCCGTTTCCAGCATTGTGTTATGAACAACGTACAAAACCCAATCGTCATTGACCAAAAC 958
Query 959 TATTGTCCTGGCAACGAAAATTGCCCTAATCAGGTTTCTGGGATAAAAATTAGCGATGTA 1018
|| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 959 TACTGCCCTGGCAACGAAAATTGCCCTAATCAGGTTTCTGGGATAAAAATCAGCGATGTA 1018
Query 1019 ATGTTCTTCGATATACACGGAACATCGGCGACAGAAGTCGGAGTGAAATTAGACTGTAGC 1078
|||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 1019 ATGTTCTTCGATATACACGGGACATCGGCGACGGAAGTTGGAGTGAAATTAGACTGTAGC 1078
Query 1079 TCTAAGAAGCCGTGCACCGGAATTCGAATTCAAGATGTGAAGTTGACGTACCGGAATAAA 1138
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TCTAAGAAGCCGTGCACGGGAATTCGAATTCAAGATGTGAAGTTGACGTACCGGAATAAA 1138
Query 1139 CCAGCAACAACAGATTGTAGTCATGCCGGAGGAAGTGAGGCAGGATTTCAACGGCCCAAC 1198
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 1139 CCAGCAACAACAGATTGTAGTCACGCTGGAGGTAGTGAGGCAGGATTTCAACGGCCCAAC 1198
Query 1199 AGTTGTCTATGACCA-AAT-GACAAAATATTTGTCTTCATTTCGTTAGTTGTGAAATTGT 1256
||||||||||||||| || || ||||||||||||||| ||| |||||| ||| ||||||
Sbjct 1199 AGTTGTCTATGACCAGAAAAGA-AAAATATTTGTCTTCTTTTTGTTAGTAGTGTAATTGT 1257
Query 1257 AAGTAACGTCGTATTTTCCATATGTATTACGGCTTTATTCCTGGAGGGTTGGGATACGTG 1316
|||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||
Sbjct 1258 AAGTAACGTCGTATTTTC-ATATATATTACGGCTTTATTCCTGGAGGGTTGGAATACGTG 1316
Query 1317 AAATTATGGTCTAGTATTTTCACAAAATCAATTTCTGATGATGCTATTTGTTATGCATTA 1376
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1317 AAATTATGGTCTAGTATTTTCGCAAAATCAATTTCTAATGATGCTATTTGTTATGCATTA 1376
Query 1377 GTCAATGCGGACT 1389
|||||||||||||
Sbjct 1377 GTCAATGCGGACT 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68423342835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5