BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486454
Length=721
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59900.1 | Symbols: ARGOS | auxin-regulated gene involved in... 1002 0.0
> AT3G59900.1 | Symbols: ARGOS | auxin-regulated gene involved
in organ size | chr3:22129726-22130464 FORWARD LENGTH=739
Length=739
Score = 1002 bits (542), Expect = 0.0
Identities = 669/727 (92%), Gaps = 21/727 (3%)
Strand=Plus/Plus
Query 1 TTGCCTTCCTCATTTCCCTACTAGTACTAGCTAGTTTCACACAGTTTCATT-A-CCAAAC 58
||| |||||||||||||||||||||||| | ||||||||||||||| || | || |||
Sbjct 1 TTGTCTTCCTCATTTCCCTACTAGTACT---T-GTTTCACACAGTTTC-TTGATCC-AAC 54
Query 59 C-AAACCAAAACACAAAAGCTTCTCAAACTCCTTCACCTCAAAGCTTCTTCTTTTAAATC 117
| ||||||| |||| |||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 55 CAAAACCAATACAC-AAAGCTTCTCAAACTCCTTCACCTCAAAGCTTCTTCCTTTACATC 113
Query 118 TGAATCGTTGAGTTAACTCGGATTTGTTCTGCATTCTCTGTTTCTGAATCGTGGGTCATC 177
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 114 TGAATCGTTGAGTTAACTCGGATTTGTTCTGCATCCTCTGTTTCTGAATCGTGGGCCATC 173
Query 178 GTGA-TTTGTCTCGAATTCGTAACCGTTTGCTTCGATCAAGCTGCATTGGTTAACCAG-T 235
| | |||||||||||||| | ||| ||||||||||||||||||||||||||||||| |
Sbjct 174 CTTATTTTGTCTCGAATTCTTCACCAATTGCTTCGATCAAGCTGCATTGGTTAACCAGTT 233
Query 236 GCCCTaaaaaaaCATATCTTTGAGCAAAA-TTTGTCACCGATCTTCTAAATCGGAATCAG 294
||||| ||| | || |||||||||||||| |||||||| ||||||||||||| || |||
Sbjct 234 GCCCT-AAAGATCAGATCTTTGAGCAAAATTTTGTCACTGATCTTCTAAATCCAAACCAG 292
Query 295 ACCCAGCAAAACAATCTCGTTAGATAGATGATTCGCGAAATCTCAAACTTACAAAACGAT 354
|| ||||||||||| ||| | | ||||||||||| |||||||||||||||||||| |||
Sbjct 293 ACACAGCAAAACAACCTC--T-G-TAGATGATTCGAGAAATCTCAAACTTACAAAAAGAT 348
Query 355 ATTATTAACATTCAAGACCGTTATTCGAACAACGGAGTCATGGACGTCGGAAGAAACAAC 414
||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 349 ATTATAAACATTCAAGACAGTTATTCGAACAACCGAGTCATGGACGTCGGAAGAAACAAC 408
Query 415 CGGAAAAACATGAGCTTTCGAAGTTCGCCGGAGAAAAGCAAGCAAGAGTTACGGCGGAGT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 CGGAAAAACATGAGCTTTCGAAGTTCGCCGGAGAAAAGCAAGCAAGAGTTACGGCGGAGT 468
Query 475 TTCTCGGCGCAGAAAAGGTTGATGATCCCGGCGAATTATTTCAGTTTAGAGTCTCTGTTT 534
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TTCTCGGCGCAGAAAAGGATGATGATCCCGGCGAATTATTTCAGTTTAGAGTCTCTGTTC 528
Query 535 CTATTGGTGGGTCTCACGGCGTCTCTGTTAATCCTTCCGTTAGTTTTGCCGCCGTTACCT 594
|||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 529 CTATTGGTTGGTCTAACGGCATCTCTGTTAATACTTCCGTTAGTTTTGCCGCCGTTACCT 588
Query 595 CCGCCTCCGTTTATGCTGCTTTTGGTTCCCATTGGGATTATGGTTTTACTCGTGGTTCTT 654
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 589 CCGCCTCCGTTTATGCTGCTATTGGTTCCCATTGGGATTATGGTTTTACTCGTCGTTCTT 648
Query 655 GCCTTCATGCCTTCTTCTGATTCTAATAATGCTAATAGAGATGTAACTTGCAATTTTATG 714
|||||||||||||||||| |||||||| ||||||| |||||||||||||||||| |||
Sbjct 649 GCCTTCATGCCTTCTTCTCATTCTAAT---GCTAATACAGATGTAACTTGCAATTTCATG 705
Query 715 TAAATCT 721
|||||||
Sbjct 706 TAAATCT 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34962966312
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5