BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486462
Length=1064
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59960.1 | Symbols: ASHH4, SDG24 | histone-lysine N-methyltr... 1517 0.0
AT2G44150.1 | Symbols: ASHH3, SDG7 | histone-lysine N-methyltra... 601 5e-171
> AT3G59960.1 | Symbols: ASHH4, SDG24 | histone-lysine N-methyltransferase
ASHH4 | chr3:22148334-22150386 FORWARD LENGTH=1059
Length=1059
Score = 1517 bits (821), Expect = 0.0
Identities = 990/1070 (93%), Gaps = 18/1070 (2%)
Strand=Plus/Plus
Query 1 ATGTCTTCCTCCAAGAAGGGTTCCGATCGGAATCAAATCAGGAAATCGTTGAGGAAGTTG 60
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGTCTTCCTCGAAGAAGGGTTCCGATCGGAATCAAATCAGGAAGTCGTTGAGGAAGTTA 60
Query 61 AAAAAGCAGATTGGGGAATTGGAGAAACTTGAATCTCCTCCGGAGCCGTTGAATAAAGGG 120
||||||||||||||||||||||||||||||||| | ||||||| | ||||||||| | |
Sbjct 61 AAAAAGCAGATTGGGGAATTGGAGAAACTTGAA--T-CTCCGGATCGGTTGAATAATGTG 117
Query 121 AAGCCTATCTTCATCAAGCGCAATATATACTTGAAGAAGAAATTCAAAAAGAGAGTTAAA 180
|||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||
Sbjct 118 AAGCCTATCTTCATCAAGCGCAATATATACTTGAAGAAGAAACTCAAGAAGAAAGTTAAG 177
Query 181 GATCATGGCATATTCTGTTCTTGCTCCTTGGATCCTGGCTCTTCAACTATTTGTGGCAGT 240
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 178 GATCATGGCATATTCTGTTCTTGCTCCTTGGATCCTGGTTCTTCAACTCTTTGTGGCAGC 237
Query 241 GATTGCAATTGTGGGATTCTACTCTCAAGCTGTTCTTCTAGTTGCAAATGCAGTAGTGAA 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 238 GATTGCAATTGTGGGATTCTACTCTCAAGCTGTTCGTCTAGTTGCAAATGCAGTAGTGAA 297
Query 301 TGCACCAACAAGCCGTTCCAACAACGACATATCAAGAAGATGAAGTTAGTTCAGACAGAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TGCACCAACAAGCCGTTCCAACAACGACATATCAAGAAGATGAAGTTAGTTCAGACAGAG 357
Query 361 AAATGTGGATATGGGATTGTAGCAGATGAAGATATCAATTCAGGAGAGTTTATCATTGAA 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 358 AAATGTGGATATGGGATTGTAGCAGATGAAGATATCAACTCAGGAGAGTTTATCATTGAA 417
Query 421 TATGTTGGGGAAGTAGTTATTGACGAAAAGATTTGTGAAGAAAGGCTTTGGAAGCTGAAT 480
||||| ||| | | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 418 TATGT-GGG-A-GAAGTTATTGACGACAAGATTTGTGAAGAAAGGCTTTGGAAGCTGAAT 474
Query 481 CATAAGGTCGAGAAAAATTTCTATTTGTGTCAGATTAACTGGAACATGGTGATTGATGCC 540
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 475 CATAAGGTCGAGACAAATTTCTATTTGTGTCAGATAAACTGGAACATGGTGATTGATGCT 534
Query 541 ACTCATAAGGGTAATAAATCAAGATACATCAATCACAGCTGCAACCCTAATACAGAGATG 600
||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 535 ACTCACAAGGGTAATAAATCAAGATACATCAATCACAGCTGCAGTCCTAACACAGAGATG 594
Query 601 CAGAAATGGATAATTGATGGAGAGACAAGAATCGGCATATTTGCTACCCGTTTCATAAAC 660
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 595 CAGAAATGGATAATTGATGGCGAGACAAGAATCGGCATTTTTGCTACCCGTTTCATAAAC 654
Query 661 AAAGGCGAGCAGTTGACATACGATTACCAGTTTGTTCAGTTTGGTGCAGATCAAGATTGC 720
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AAAGGCGAGCAGTTGACTTACGATTACCAGTTTGTTCAGTTTGGTGCAGATCAAGATTGC 714
Query 721 TACTGTGGTGCAGTGTGTTGCAGAAAAAAGCTAGGTGCAAAACCTTGCAAAACTAAGAGG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TACTGTGGTGCAGTGTGTTGCAGAAAAAAGCTAGGTGCAAAACCTTGCAAAACTAAGAAC 774
Query 781 ACAACCTCGGAAGAAGCTGTGAAACCAGTGGCATGTAAAGTAACATGGAAAACGCCCAAG 840
||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 775 ACAACCTTAGAAGAAGCTGTGAAGCCAGTGGCATGTAAAGTGACCTGGAAAACGCCCAAG 834
Query 841 ATTATTTGGAT-CT-ATTTTCGACAAGCCAATTTGGATGCGTCAGGAAAAGCTTGGAACA 898
|| | || | | | || || |||||||||||||||||||| ||||||||||||
Sbjct 835 CTTCTCA--ATTCAGAGGTAAGAGAAACCAATTTGGATGCGTCAGGACAAGCTTGGAACA 892
Query 899 A-CATTAGCCAGAGGAAAATATGTTGCCGGGATTGCATTGGTGCGGCTGTTGTCAT---T 954
| ||| |||||||||||||||||||||||||| |||||||||||| | || || |
Sbjct 893 ATCAT-AGCCAGAGGAAAATATGTTGCCGGGACTGCATTGGTGCG--TATTA-CACGGCT 948
Query 955 AAGGGGCAGTTTTTGACAGTAGTAGTTGACATTTTCCAGGTCATGTATGAGGATGGTGTT 1014
|| | || ||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 949 CAGATGAAGGTTTTGACTCTAGTAGTTGACATTTTTCAGGTCATGTATGAGGATGGTGTT 1008
Query 1015 ACCGAGATTATCGACATGTGCAGAGAAGTTTGGATGATTGTAACTGCTTG 1064
|||||||| ||||||||||||||||||||||||| | |||||||||||||
Sbjct 1009 ACCGAGATCATCGACATGTGCAGAGAAGTTTGGAAGGTTGTAACTGCTTG 1058
> AT2G44150.1 | Symbols: ASHH3, SDG7 | histone-lysine N-methyltransferase
ASHH3 | chr2:18258610-18261442 FORWARD LENGTH=1695
Length=1695
Score = 601 bits (325), Expect = 5e-171
Identities = 583/704 (83%), Gaps = 32/704 (5%)
Strand=Plus/Plus
Query 126 TATCTTCATCAAGCGCAATATATACTTGAAGAAGAAATTCAAAAAGAGAGTTAAAGATCA 185
||||||||||| ||||||||||||||||| ||||||| |||||| ||| ||| ||||| |
Sbjct 385 TATCTTCATCAGGCGCAATATATACTTGACGAAGAAAGTCAAAAGGAGGGTTGAAGATGA 444
Query 186 TGGCATATTCTGTTCTTGCTCCT--T-GGATCCTGG--C-TCTTCAACTATTTGTGGCAG 239
||| || |||||||||||||||| | | |||||| | ||||||||| | ||||| ||
Sbjct 445 TGGAATCTTCTGTTCTTGCTCCTCCTCGTCTCCTGGTTCTTCTTCAACTGTCTGTGGGAG 504
Query 240 TGATTGCAATTGTGGGATTCTACTCTCAAGCTGTTCTTCTAGTTGCAAATGCAGTAGTGA 299
| ||||| |||||||||| ||| ||||||||||||| || |||||||| || | |||||
Sbjct 505 TAATTGCCATTGTGGGATGCTATTCTCAAGCTGTTCCTCAAGTTGCAAGTGTGGGAGTGA 564
Query 300 ATGCACCAACAAGCCGTTCCAACAACGACATATCAAGAAGATGAAGTTAGTTCAGACAGA 359
|| | ||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 565 GTGTAACAATAAGCCGTTCCAACAACGACATGTCAAGAAGATGAAGTTAATTCAGACAGA 624
Query 360 GAAATGTGGAT-ATGGGATTGTAGCAGATGAAGATATC-AATTCAGGAGAGTTTATCATT 417
||||| |||| | |||||||| ||||| ||||| ||| || | |||||||||||||||
Sbjct 625 AAAATGCGGATCA-GGGATTGTGGCAGAAGAAGAAATCGAA-GCTGGAGAGTTTATCATT 682
Query 418 GAATATGTTGGGGAAGTAGTTATTGACGAAAAGATTTGTGAAGAAAGGCTTTGGAAGCTG 477
||||||||| || || ||||||||| || |||| ||||||||| |||||||||||| ||
Sbjct 683 GAATATGTT--GG-AGAAGTTATTGATGATAAGACTTGTGAAGAGAGGCTTTGGAAGATG 739
Query 478 AATCATAAG-GTCGAGA-AAAATTTCTATTTGTGTCAGATTAACTGGA-ACATGGTGATT 534
|| || | | ||||| ||| ||| ||||| ||| ||| |||| || | ||||| |||
Sbjct 740 AAACA-CCGTGGCGAGACAAACTTT-TATTTATGTGAGA-TAACCAGAGATATGGTTATT 796
Query 535 GATGCCACTCATAAGGGTAATAAATCAAGATACATCAATCACAGCTGCAACCCTAATACA 594
||||| ||||||||||| || ||||||||||| || ||||| |||||||||||||||||
Sbjct 797 GATGCTACTCATAAGGGAAACAAATCAAGATATATTAATCATAGCTGCAACCCTAATAC- 855
Query 595 G-AGATGCAGAAATGGATAATTGATGGAGAGACAAGAATCGGCATATTT-GCTACCCGT- 651
| |||||||||||||||||||||| || ||||| ||||||||||| ||| || ||||||
Sbjct 856 GCAGATGCAGAAATGGATAATTGACGGCGAGACCAGAATCGGCAT-TTTCGCCACCCGTG 914
Query 652 TTCAT-AAACAAAGGCGAGCAGTTGACATACGATTACCAGTTTGTTCAGTTTGGTGCAGA 710
| || ||| || || ||||| ||||| || ||||| |||||||||||||||||||||||
Sbjct 915 GT-ATCAAA-AAGGGAGAGCATTTGACCTATGATTATCAGTTTGTTCAGTTTGGTGCAGA 972
Query 711 TCAAGATTGCTACTGTGGTGCAGT-GTGTTGCAGAAAAAAGCTAGGTGCAAAACCTTGCA 769
|||||| ||| | ||||| || || | ||||||||| ||||| |||| ||||||| |||
Sbjct 973 TCAAGACTGCCATTGTGGGGCTGTAG-GTTGCAGAAGGAAGCTTGGTGTAAAACCTAGCA 1031
Query 770 AAACTAAGAGGACAACCTCGGAAGAAGCTGTGAAACCAGTGGCA 813
|| |||||| | ||||||| |||||| | || | |||||||
Sbjct 1032 AACCTAAGAT-AG--CCTCGGATGAAGCTTTTAATCTAGTGGCA 1072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52108165710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5