BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486469
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60000.2 | Symbols: QWRF6 | Family of unknown function (DUF5... 1936 0.0
> AT3G60000.2 | Symbols: QWRF6 | Family of unknown function (DUF566)
| chr3:22160884-22162867 FORWARD LENGTH=1501
Length=1501
Score = 1936 bits (1048), Expect = 0.0
Identities = 1307/1427 (92%), Gaps = 37/1427 (3%)
Strand=Plus/Plus
Query 1 TCGAAAAAGTTATGGAGGAGAAAACCAGCGGACCTAAGCAAAATCAGCCATCAACACCGG 60
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 36 TCGAAAAAGTTATGGAGGCGAAAACCAGCGGACCTAAGCAAATTCAGCCATCAACACCGG 95
Query 61 CTCCTCCGCCTTCAACGCGGCGGCCAAGAGTTAGAGAAGTAAGATCTAGATTCATGTCTC 120
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 96 CTCCTCCGCCTTCAACGCGGCGGCCAAGAGTTAGAGAAGTAAGTTCCAGATTCATGTCTC 155
Query 121 CGGTTACTTCATCCTCTTCCTCTGCCGGCGATCTCCACTTTTTGACGTCG-AATTCTCCA 179
|||||||||||||||||||||| ||||| |||||||||| |||||| | | |||||||||
Sbjct 156 CGGTTACTTCATCCTCTTCCTCCGCCGGAGATCTCCACTCTTTGAC-TTGTAATTCTCCA 214
Query 180 GAGTACCACCACCTTCAACATCAACACCACCAGATTCAACGCTCTGTTTCGGCTCAAAGG 239
|| | ||||||| | |||||||||||||||||||||||||||||| ||||| ||
Sbjct 215 AAGCAGCACCACC-T-----TCAACACCACCAGATTCAACGCTCTGTTTCTGCTCAGAGA 268
Query 240 CTTAGACGTCAGTTAAAAATGGCAGACGGAGATGAGAATCGCTCATCAGAGACGGCGGCG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 CTTAGACGTCAGTTAAAAATGGCAGACGGAGATGAGAATCGCTCATCAGAGACGGCGGCG 328
Query 300 CGTAGCCTAGACTCGCCTTTTACACTCTGGCAAAGCGGAAAAACATCGAGACAAAGTCAC 359
|||||||||||||||||||||||||||| |||||| ||||| |||||| || |||||||
Sbjct 329 CGTAGCCTAGACTCGCCTTTTACACTCTCACAAAGCCGAAAATCATCGAAACCAAGTCAC 388
Query 360 TTGAAGCCGCTTAAGGAGAATTCTCACCGGCTCGAAACTCCTACACCAATTG-T--TCCT 416
||||||||||| || ||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 389 TTGAAGCCGCTCAACGAGAATTCTCACCGGCTCGAAACTCCTACACCAATGGTTCCTCCT 448
Query 417 CCGCCGTCTAGATCACGGCTAAGTCAACAACGATTACTAACAGCTTCCGCCGCAACGAGA 476
|| |||||||||||||||||||| |||||| |||||| || | | |||||||||
Sbjct 449 CCACCGTCTAGATCACGGCTAAGCCAACAAAGATTAC---CAAC-T-----GCAACGAGA 499
Query 477 CTTCTCCAATC-AAGCGGCATATCAGCCTCTAATGAGAAAGAAGGAATCATCAACACTCA 535
||||||||| | ||||||||||||||||| | |||||||||||||||||||||||| |||
Sbjct 500 CTTCTCCAA-CTAAGCGGCATATCAGCCTGTTATGAGAAAGAAGGAATCATCAACATTCA 558
Query 536 AGAGAAACCTAAATATAACGGCTCAGATCATTTTCCGACACTTTCTTGTACAACTCATCC 595
||||||||||||| ||||||||||||||| ||||| ||||||||||||| ||||||||
Sbjct 559 GGAGAAACCTAAATCTAACGGCTCAGATCAGTTTCCAACACTTTCTTGTAGAACTCATCT 618
Query 596 TAAAGTTTTCAATAATTCGGTGCCTTCTTCTTCTCTTAATCCATTTGTGAGTTCACCATT 655
|||||||||||| ||| | || | ||||||||||||||| || ||||||||||||| |
Sbjct 619 TAAAGTTTTCAACAATCCTGT-AC--CTTCTTCTCTTAATCGATCTGTGAGTTCACCA-T 674
Query 656 GTCCAA-CTGTAACGGTCGTGAGAGCAGTTCATTTTCACGGTTAGGCTTGGCATTGCCTC 714
| ||| |||||||| ||||||||||||||| |||||||| ||||||||| |||||||||
Sbjct 675 CTTCAAGCTGTAACGTTCGTGAGAGCAGTTCGTTTTCACGTTTAGGCTTGCCATTGCCTC 734
Query 715 CGGTGGCACCGAATTCGAAGGTTCCAGCTGATACTAAAAAGCAGAGGAAGGTTTCAGAGC 774
| ||||||| | ||||||||||| ||||||||||| |||||||||||| ||||||
Sbjct 735 CAATGGCACC-----C-AAGGTTCCAGCGGATACTAAAAAACAGAGGAAGGTTACAGAGC 788
Query 775 AATTGGAAGATGTGCATTCTCTGAAACTACTCCACAATCGTTACCTCCAATGGAGATTTG 834
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 789 AATTGGAAGATGTGCATTCTCTGAAACTGCTCCACAATCGTTACCTCCAATGGAGATTTG 848
Query 835 CAAACGCCAATGCACAAGTGAAGACTCAAACTCA-AAAAGCTCAAACTGAGACCATGATC 893
|||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||
Sbjct 849 CAAACGCCAATGCACAAGTGAAGACTCAAACTCATAAAA-CACAAACTGAGACCATGATC 907
Query 894 CATTCCTTTGGTTCCAAGATATCAGAATTACATGATTCTGTGCAAAGGAAACGCATAGAG 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 CATTCCTTTGGTTCCAAGATATCAGAATTACATGATTCTGTGCAAAGGAAACGCATAGAG 967
Query 954 TTTCAACGTTTATTGAAAACTAAAGCTCTTCTTGCGATTACAGAATCTCAAACTCCATGT 1013
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 968 CTTCAACGTTTATTGAAAACTAAAGCTCTTCTCGCGATTACAGAATCTCAAACTCCATGT 1027
Query 1014 TTGGAGCAATGGTGTGCTATTGAAGAAGAGTATTCGACTTCGGTGTGGCAAACAATCCAA 1073
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1028 TTGGAGCAATGGTCTGCTATTGAAGAAGAGTATTCGACTTCGGTGTCACAAACAATCCAA 1087
Query 1074 GCTTTGTCCAATGCTTCATTACGGCTTCCACTAGATGGGGATATCATGGTTGATTCTAAG 1133
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1088 GCTTTTTCCAATGCTTCATTACGGCTTCCACTCGATGGGGATATCATGGTTGATTCTAAA 1147
Query 1134 CAGTTAGGAGATGCACTTGTGGCTGCTTCAAAGATTATTGACGGCATTACACTAAATGTT 1193
||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1148 CAGTTAGGAGATGGACTTGTGGCTGCTTCAAAGATTGTTGACGGCATTACACAAAATGTT 1207
Query 1194 GGAAACTACATGCCAAAGGCAAAGGAGATGGAGAGTTTGGTGACAGAATTAGCAAGAGTG 1253
|||||||| |||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 1208 GGAAACTATATGCCAAAGGCAAAGGAGATGGAGAGTTTGTTGTCAGAATTAACAAGAGTG 1267
Query 1254 ACTAGTAGAGAAAGATCATTGACAGAAAATTGCAGA-GTGGCTCTTCTTAAAACGCAAGC 1312
|||| || |||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1268 GCTAGAAGTGAAAGATCATTGACAGAAAATTGC-GTTGTGGCTCTTCTTAAAACGCAAGC 1326
Query 1313 TTCACTAATTGAAGAATGTTCTATGAGAGGTCAACTTATCCAGCAAACACCAAAAGAAGA 1372
||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1327 TTCACAAATTGAAGAATGTTCTATGAGAAGTCAACTTATCCAGCAAACAACAAAAGAAGA 1386
Query 1373 GTCACCTACTAAGTGAACACAACTCTTGTTCTAGTGATAGAGATTTA 1419
|||| || |||| ||| |||||||||||||||| ||| |||||||||
Sbjct 1387 GTCATCTTCTAAATGAGCACAACTCTTGTTCTACTGAAAGAGATTTA 1433
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69929359185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5