BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486472
Length=1690
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60070.1 | Symbols: | Major facilitator superfamily protein... 2477 0.0
AT2G44280.1 | Symbols: | Major facilitator superfamily protein... 1242 0.0
> AT3G60070.1 | Symbols: | Major facilitator superfamily protein
| chr3:22183243-22186329 REVERSE LENGTH=1895
Length=1895
Score = 2477 bits (1341), Expect = 0.0
Identities = 1545/1639 (94%), Gaps = 32/1639 (2%)
Strand=Plus/Plus
Query 1 ATGAAACAAGTTTTTCTCTGTCTTCTTTACGCCTTCTTTTTCCCTCCTTTGGGGGAAAAA 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 1 ATGAAACAAGTTTTTCTCTGTCTTCTTTACTCCTTCTTTTTCCCTCCTTTGGGGG-AGAA 59
Query 61 ATCGTTGCTTTTGAGGTTTCTTCTAAATCAATCTCTCTTCACAAGGGtttttttttATTT 120
|| ||||||||||||||||||| || ||||||||||| ||||||||| ||| ||||
Sbjct 60 ATTGTTGCTTTTGAGGTTTCTTATAGATCAATCTCTCATCACAAGGG----CTTTCATTT 115
Query 121 GAAATTGATTCTGGGTCCAGATTG-------------A--TTA--------AAAA-TTCG 156
||| |||||||||||||||||||| | ||| |||| ||||
Sbjct 116 GAAGTTGATTCTGGGTCCAGATTGATTAAAAATCCTCACTTTATTCCGGGGAAAATTTCG 175
Query 157 AAGCGATTGAGAAAATGACCGGAGGAAGTGAGGAGGATCCATTCACAAAACCCATTGGAA 216
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 AAGCGGTTGAGAAAATGACCGGAGGAAGTGAGGAGGATCCATTCACAAAACCCATTGGAA 235
Query 217 GATGGTCTGTCTTCTTCTATGGAGTTGGGCACATGCTTAATGACATTACTGCTTCATGTT 276
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 236 GATGGTCTGTCTTCTTCTATGGAGTAGGGCATATGCTTAATGACATTACTGCTTCTTGTT 295
Query 277 GGTTCACTTACCTCCTCCTATTCTTGACCCAAATTGGTCTCTCCCCAAGAGATGCAGCAA 336
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 296 GGTTCACTTACCTCCTCCTATTCTTGACCCAAATTGGTCTCTCCCCTAGAGATGCAGCCA 355
Query 337 TTGTTATGCTATCAGGCCAAGTTGCTGATGCGTTTGCTACTATCTTCACTGGTGAATTGA 396
|||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 356 TTGTTATGCTCTCTGGCCAAGTTGCTGATGCATTTGCTACTATCTTCACTGGTGAATTGA 415
Query 397 TAGATAGGTTTGGACATTTCAAGATTTGGCATGCTGCAGGATCATTACTGGTTGCAATCT 456
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TTGATAGGTTTGGACATTTCAAGATTTGGCATGCTGCAGGATCATTACTGGTTGCAATCT 475
Query 457 CGTTTTCCTCGGTTTTCGGAGGTTGTCTGCCTTGTTCGATCCTCCATAACGACTCTATAA 516
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 476 CGTTTTCCTCCGTTTTTGGAGGTTGTCTGCCTTGTTCGATCCTCCATAACGACTCTTTAA 535
Query 517 CACTCGAAACCTTCTCCTACAGTATGTTTGCAGCTATATTTAACATTGGATGGGCTGCTA 576
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CACTTGAAACCTTCTCCTACAGTATGTTTGCAGCTATATTTAACATTGGATGGGCTGCTA 595
Query 577 CTCAAGTTTCCCATATGGCCATGGTTAATTGCATTTCATTAAACTCAACAAGCAGAGTTG 636
||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 596 CTCAAGTTTCCCATATGGCTATGGTTAATTGTATTTCATTGAACTCAACAAGCAGAGTTG 655
Query 637 CTTTAACTAGCTCTCGTAACGCGTTTACTATGGTTGCTAATCTTGGCTTATATGCGATTG 696
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CTTTAACAAGCTCTCGTAACGCGTTTACTATGGTTGCTAATCTTGGCTTATATGCGATTG 715
Query 697 CTTTAGTAGTATTCGGTGTTATTAAAGCTGGTTCAAAAGAAGATACGGAAACACAGTATC 756
||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 716 CTTTAGTAGTATTCGGTGTTATTAAGGCTGGTTCAAAAGAAGATACCGAAACTCAGTATC 775
Query 757 GTTGGATTGCATATTCATCTATCACGATTGGATGCTGCTTTGTGGTCATATTTCTTATGG 816
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 776 GCTGGATTGCATATTCATCTATCACAATTGGATGCTGCTTTGTGGTCATATTTCTTATGG 835
Query 817 GGACAAAAGAGCCAAGGCTGAGGATAGAATTGAAACAAACTAGCCGAGCAAGAATACCGT 876
|||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||
Sbjct 836 GGACAAAAGAGCCAAGGCTGAGGATAGATTTGAAAGAAACTAGCCGAGCGAGAATACCGT 895
Query 877 GGGTCTATTGGTTCCGGAAACTTCTATACTATCAAGTTGCCATGGTTTACCTCCTCACTC 936
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 896 GGGTCTATTGGTTCCGGAAAATTCTGTACTATCAAGTTGCCATGGTTTACCTCCTCACTC 955
Query 937 GATTAGTATTGAATGTTTCTCAGGCATATCTTGCATTCTTCGTTATCGATGATTTGCAAA 996
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 956 GATTAGTATTGAATGTTTCTCAGGCATATCTTGCGTTCTTTGTTATCGATGATTTGCAAA 1015
Query 997 TGGGTCAATCCGCTAAAGCTTTGGTTCCTGCGATTATCTATATCTGCAGCTTTGTTGTAT 1056
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1016 TGGATCAATCCGCTAAAGCTTTGGTTCCTGCAATTATCTATATCTGCAGCTTTGTTGTAT 1075
Query 1057 CGGTTCTGCTTCAGGAGATTCCATGGAACGGGAGACGCTTGAAGGCGTATTATACAGCTG 1116
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1076 CGGTTCTGCTTCAGGAGATTCCATGGAACGGGAAACGCTTGAAGGCGTATTATACAGCTG 1135
Query 1117 GTGGTATAATTTGGATATTCTGTGGTGCAGCAATTCTTCTATTGCCTAGAGACATAAGTT 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GTGGTATAATTTGGATATTCTGTGGTGCAGCAATTCTTCTATTGCCTAGAGACATAAGTT 1195
Query 1177 CTTTCATGTATGCGATATCTGTCTTTATTGGCATCGCAAATGCATTAATGATGGTTACAG 1236
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 1196 CTTTCATGTATGCGATATCTGTCTTTATCGGCATCGCGAATGCATTAATGATGGTAACAG 1255
Query 1237 CAATCAGTATGCAGAGTGTGTTGGTTGGTGCGGAAGTCGGTGGTTGCGCGTTTGTCTGTG 1296
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || |
Sbjct 1256 CAATCAGTATGCAGAGTGTGTTGGTTGGTGCAGAAGTCGGTGGTTGCGCATTTGTTTGCG 1315
Query 1297 GCTCGTTAAGTTTCTTGGACAAGATGTCTTGTGGGCTTGCTCTATATGTTCTTCAGTCAC 1356
||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1316 GCTCGTTGAGCTTCTTAGACAAGATGTCTTGTGGACTTGCTCTATATGTTCTTCAGTCAC 1375
Query 1357 ACCAAACTACTTCACCTAGAGGCCAACTAAACAACAACAACCAACAAAGTGTTTACCTTT 1416
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1376 ACCAAACTACTTCACCTAGAGGCCAACTAAACAACAAC--C-AACAAAGTGTTTACCTTT 1432
Query 1417 CGGTTACAAGATACGGTTTAGGTCTTGTTCCAGCATTGTGCTCGTTTGTTGGTGTCGCTG 1476
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 CAGTTACAAGATACGGTTTAGGTCTTGTTCCAGCATTGTGCTCGTTTGTTGGTGTCGCTG 1492
Query 1477 TAACGTTCTTTATGGAGCTCGAAGCTGCTGGATCACTATCGAAGCCCCTGCTGCGTGAGC 1536
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1493 TAACGTTCTTTATGGAGCTCGAAGCTGCTGGATCATTATCGAAGCCTCTGCTGCGTGAGC 1552
Query 1537 CGTTACTAGAATGACAAAATGGTATTTTGAGGTTAAAAACACTAAATGCTCGATTGtttt 1596
|||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1553 CGTTACTAGAATGACAAAATAGTCTTCTGAGGTTAAAAACACTAAATGCTCGATTGTTTC 1612
Query 1597 ttttGAACAAGTTTGATTT 1615
||||||| | |||||||||
Sbjct 1613 TTTTGAATATGTTTGATTT 1631
> AT2G44280.1 | Symbols: | Major facilitator superfamily protein
| chr2:18301350-18304284 REVERSE LENGTH=1959
Length=1959
Score = 1242 bits (672), Expect = 0.0
Identities = 1134/1351 (84%), Gaps = 56/1351 (4%)
Strand=Plus/Plus
Query 177 GGAGGAAG-TGAGGAGGATCCATTC-ACAAAACCCA-TTGGAAGATGGTCTGTCTTCT-T 232
||| |||| || || |||||| || |||||| ||| ||||||||| |||||| |||| |
Sbjct 384 GGAAGAAGAAGAAGAAGATCCA-TCGACAAAA-CCACTTGGAAGATTGTCTGTGTTCTAT 441
Query 233 CTATGGAGTTGGGCACATGCTTAATGACATTACTGCTTCATGTTGGTTCACTTACCTCCT 292
||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 442 -TATGGAGTTGGACATATGCTTAATGACATTACTGCTTCTTGTTGGTTCACTTACCTTCT 500
Query 293 CCTATTCTTGACCCAAATTGGTCTCTCCCCAAGAGATGCAGCAATTGTTATGCTATCAGG 352
| | || || ||||||||||| ||||||||||| ||||| |||||||| ||||| || ||
Sbjct 501 CTTGTTTTTAACCCAAATTGGCCTCTCCCCAAGGGATGCTGCAATTGTCATGCTCTCTGG 560
Query 353 CCAAGTTGCTGATGCG-TTTGCTACTATCTTCACT-GGTGAATTGATAGATAGGTTTGGA 410
||||||||||||| | |||||||| ||||||| | ||||||||||| ||||| |||||
Sbjct 561 TCAAGTTGCTGATG-GTTTTGCTACAATCTTCA-TCGGTGAATTGATTGATAGATTTGGG 618
Query 411 CATTTCAAGATTTGGCATGCTGCAGGATCATTACTGGTTGCAATCTCGTTTTCCTCGGTT 470
|||||||| |||||||||||||||||||| ||| | ||||| ||||| |||||||| |||
Sbjct 619 CATTTCAAAATTTGGCATGCTGCAGGATCCTTATTAGTTGCTATCTCATTTTCCTCTGTT 678
Query 471 TTCGGAGGTTGTCTGCCTTGTTCGA-TCCTCCATAACGACTCTAT-AAC-ACTCGAAACC 527
|| || |||||| |||||||||| | |||||||||| ||||| | ||| | |||||||
Sbjct 679 TTTGGCGGTTGTTTGCCTTGTTC-ACTCCTCCATAATAACTCT-TCAACTA-TCGAAACA 735
Query 528 TTCTCCTACAGTATGTTTGCAGCTATATTTAACATTGGATGGGCTGCTACTCAAGTTTCC 587
|| || |||||||||||||||||||| || || |||||||||||||||||||| |||||
Sbjct 736 TTATCGTACAGTATGTTTGCAGCTATCTTCAATATTGGATGGGCTGCTACTCAGGTTTCT 795
Query 588 CATATGGCCATGGTTAATTGCATTTCATTAAACTCAACAAGCAGAGTTGCTTTAACTAGC 647
|| ||||| ||||||||||||||| |||| || |||||||||||||| || |||| |||
Sbjct 796 CACATGGCTATGGTTAATTGCATTACATTGAATTCAACAAGCAGAGTAGCACTAACAAGC 855
Query 648 TCTCGTAACGCGTTTA-CTATGGTTGCTAATCTT-GGCTTATATGCGATTGCTTTAGTAG 705
|| ||||| ||||||| | |||||||||||| || |||||||| || ||||||||||| |
Sbjct 856 TCCCGTAATGCGTTTAGC-ATGGTTGCTAAT-TTAGGCTTATACGCTATTGCTTTAGTTG 913
Query 706 TATTCGGTGTTATTAAAGCTGGT-TCAAAAGAAGATACGGAAACACAGTATCGTTGGATT 764
|||| ||||||| | || || |||||||| |||| ||| | |||||||||||||||
Sbjct 914 TATTTGGTGTTAGCGAGGC-CGTGACAAAAGAAAATACCGAATCTCAGTATCGTTGGATT 972
Query 765 GCATATTCATCTATCA-CGATTGGATGCTGCTTTGTGGTCATATTTCTTATGGGGACAAA 823
|| |||||||| |||| || |||| |||||||||||||||||||||||||||||||||||
Sbjct 973 GCTTATTCATCCATCACCG-TTGGCTGCTGCTTTGTGGTCATATTTCTTATGGGGACAAA 1031
Query 824 AGAGCCAAGGCTGAGGATAGAAT-TGAA-ACAAACTAGCCGAGCAAGAATACCGTGGGTC 881
|| ||||||||||||||| ||| | || | ||||||| |||||||||||||| ||| ||
Sbjct 1032 GGAACCAAGGCTGAGGATA-AATCT-AAGAGAAACTAGTCGAGCAAGAATACCATGG-TC 1088
Query 882 T-ATTGGTTCCGGAAACTTCTATACTATCAAGTTGCCATGGTTTACCTCCTCACTCGATT 940
| |||||||||| ||| ||||||||||||||||||| |||||||| |||||||||||| |
Sbjct 1089 TTATTGGTTCCGTAAAATTCTATACTATCAAGTTGCTATGGTTTATCTCCTCACTCGACT 1148
Query 941 AGTATTGAATGTTTCTCAGGCATATCTTGCATTCTTCGTTATCGATGATTTGCAAATGGG 1000
||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1149 AGTATTGAATGTTTCACAGGCATATCTTGCATTCTTTGTTATTGATGATTTGCAAATGGC 1208
Query 1001 TCAATCCGCTAAAGCTTTGGTTCCTGCGATTATCTATATCTGCAGCTTTGTTGTATCGGT 1060
|||||| ||||||||| || ||||||| || ||||| | |||||||| |||||||| ||
Sbjct 1209 TCAATCTGCTAAAGCTCTGATTCCTGCAATAATCTACGTATGCAGCTTCGTTGTATCAGT 1268
Query 1061 TCTGCTTCAGGAGATTCCATGGAACGGGAGACGCTTGAAGGCGTATTATACAGCTGGTGG 1120
| |||||||||||||||| ||||| || | |||| | ||||| |||||| ||||||||
Sbjct 1269 TATGCTTCAGGAGATTCCTTGGAATGGAAAACGCCTCAAGGCATATTATTGTGCTGGTGG 1328
Query 1121 TATAATTTGGATATTCTGTGGTGCAGCAATTCTTCT-ATTGCCTAGA-GACAT-AAGTTC 1177
||| |||||||||||||| ||| | |||| || || |||||| ||| | ||| || | |
Sbjct 1329 TATTATTTGGATATTCTGCGGTATATCAATACT-CTTATTGCCCAGAAG-CATTAACT-C 1385
Query 1178 TTTCATGTATGCGATATCTGTCTTTATTGGCATCGCAAATGCATTAATGATGGTTACAGC 1237
|| |||||||||||| ||||||||||| ||||||||||||||| ||||| |||| ||| |
Sbjct 1386 TTACATGTATGCGATCTCTGTCTTTATCGGCATCGCAAATGCAGTAATGTTGGTGACATC 1445
Query 1238 AATCAGTATGCAGAGTGTGTTGGTTGGTGCGGAAGTCGGTGGTTGCGCGTTT-GTCTGTG 1296
||| |||||||||||||| ||| ||||| || || |||| || || || ||| || ||||
Sbjct 1446 AATTAGTATGCAGAGTGTCTTGATTGGTTCGAAACTCGGGGGATGTGC-TTTCGTTTGTG 1504
Query 1297 GCTCGTTAAGTTTCTTGGACAAGATGTCTTGTGGGCTTGCTCTATATGTTCTTCAGTCAC 1356
| || ||||| ||||| ||||| ||||| |||||||||||| ||||||||||||||||||
Sbjct 1505 GGTCATTAAGCTTCTTAGACAAAATGTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAC 1564
Query 1357 ACCAAA-CTACTTCACCTAGAGGCCAAC-TAAACAACAACAACCAACAAAGTGTTTACCT 1414
| ||| | |||||||| | ||| || |||||| ||| | || | | ||||| |
Sbjct 1565 ATCAAGGC-ACTTCACCAA-AGGTTGACGTAAACATCAA-AG--AATAT--T-TTTAC-T 1615
Query 1415 T-TCGGTTACAAGATACGGTTTAGGTCTTGTTCCAGCAT-TGTGCTCGTTTGTTGGTGTC 1472
| ||||| |||||||| || ||||| ||||||||||| | | |||||| ||||||| ||
Sbjct 1616 TCTCGGTGACAAGATATGGGTTAGGACTTGTTCCAGC-TGTATGCTCGCTTGTTGGAGTT 1674
Query 1473 GCTGTAACGT-TCTTTATGGAGCTCGA-AGC 1501
| |||||| | | |||||||| ||||| |||
Sbjct 1675 GTTGTAACATAT-TTTATGGAACTCGATAGC 1704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83533706880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5