BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486475
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60100.1 | Symbols: CSY5 | citrate synthase 5 | chr3:2219273... 2525 0.0
AT2G44350.2 | Symbols: ATCS, CSY4 | Citrate synthase family pro... 1395 0.0
AT2G11270.1 | Symbols: | citrate synthase-related | chr2:44847... 171 3e-41
> AT3G60100.1 | Symbols: CSY5 | citrate synthase 5 | chr3:22192730-22196447
FORWARD LENGTH=1754
Length=1754
Score = 2525 bits (1367), Expect = 0.0
Identities = 1531/1610 (95%), Gaps = 12/1610 (1%)
Strand=Plus/Plus
Query 1 AAGAATGGTGGTTTTTCGTAGCTTATCAGCCATTTCAAGGCTTCGGTCTCGAGCAGTGCA 60
|||||||||| ||||||| ||| |||||||||||||||| || |||||||||||||||||
Sbjct 155 AAGAATGGTGTTTTTTCGCAGCGTATCAGCCATTTCAAGACTACGGTCTCGAGCAGTGCA 214
Query 61 ACAATCCTCACTTAGCAACTCCGTCAGATGGCTCCACTCTTCTGAATTGGACTTGAAGTC 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 ACAATCCTCACTTAGTAACTCCGTCAGATGGCTCCACTCTTCTGAATTGGACTTGAAGTC 274
Query 121 GCAGATGCAAGAGATCATTCCAGAACAACAGGACCGTTTGAAGAAACTGAAATCAGAACA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 GCAGATGCAAGAGATCATTCCAGAACAACAGGACCGTTTGAAGAAACTGAAATCAGAACA 334
Query 181 TGGAAAGGTCCCAGTGGGGAACATCACCGTTGATATGGTACTTGGTGGAATGAGAGGGAT 240
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 AGGAAAGGTTCCAGTGGGGAACATCACCGTTGATATGGTACTTGGTGGAATGAGAGGGAT 394
Query 241 GACTGGATTACTCTGGGAAACCTCATTGCTTGATGCAGATGAGGGAATACGCTTTAGAGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 395 GACTGGATTACTCTGGGAAACCTCATTGCTTGATGCAGATGAGGGAATACGGTTTAGAGG 454
Query 301 CATGTCGATTCCTGAATGCCA-AAAAGTATTACCTTCAGCTCAGTCTGGAGAAGAGCCCT 359
|||||||||||||||||| || |||| |||||||||||||| ||||||||||||||||||
Sbjct 455 CATGTCGATTCCTGAATGTCAGAAAA-TATTACCTTCAGCTGAGTCTGGAGAAGAGCCCT 513
Query 360 TGCCTGAGGGTCTTCTGTGGCTTCTGTTAACTGGAAAGGTGCCAACTAAAGAGCAAGTTA 419
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 514 TGCCTGAGAGTCTTCTGTGGCTTCTATTAACTGGAAAGGTGCCAACTAAAGAGCAAGCTA 573
Query 420 ATGCTTTGTCAAAAGAGTTGGCTCATCGTGCGGCTGTGCCAGCTATAGATGCCCTGCCTT 479
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 574 ATGCTTTGTCAACAGAGTTGGCTCATCGTGCGGCTGTGCCAGCTATAGATGCTTTGCCTT 633
Query 480 CAACAGCTCATCCAATGACTCAATTTGCTAGTGGGGTTATGGCCCTTCAGGTTCAAAGTG 539
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 634 CAACAGCTCATCCAATGACTCAATTTGCTAGTGGTGTTATGGCCCTTCAGGTTCAAAGTG 693
Query 540 AGTTTCAGAAGGCATATGAGCAGGGTGATA-TTCATAAGTCAAAGTACTGGGAGCCAACC 598
||||||| ||||| |||||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct 694 AGTTTCAAAAGGCGTATGAGCAGGGTGATATTTC-TAAGTCAAAGTACTGGGAACCAACC 752
Query 599 TTTGAGGATGCACTAAACTTGATTGCTCGTGTTCCTGTTCTAGCTTCATACGTTTATCGA 658
|| || ||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 753 TTCGAAGATGCCCTAAACTTGATTGCTCGTGTTCCTGTTGTAGCTTCATACGTTTATCGG 812
Query 659 AGGATGTACAAGGATGGTAGCATCATTCCATTAGATGATTCTTTGGATTATGGTGCAAAT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 AGGATGTACAAGGATGGTAGCATCATTCCATTAGATGATTCTTTGGATTATGGTGCAAAT 872
Query 719 TTTTCACACATGCTGGGATATGATAGTCCTCAGATGAAAGAACTCATGAGGCTTTATGTC 778
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 873 TTTTCACACATGCTGGGATTTGATAGTCCTCAGATGAAAGAGCTCATGAGGCTTTATGTC 932
Query 779 ACTATCCACAGTGATCATGAAGGTGGAAATGTTAGTGCTCACGCTGGTCACCTGGTTGGG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 ACTATCCACAGTGATCATGAAGGTGGAAATGTTAGTGCTCACGCTGGTCACCTGGTTGGG 992
Query 839 AGTGCACTTTCAGATCCATATCTTTCATTTGCAGCTGCTTTAAATGGTTTAGCTGGTCCA 898
|||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||
Sbjct 993 AGTGCACTTTCAGATCCATATCTTTCATTTGCTGCTGCATTGAATGGTTTAGCTGGGCCA 1052
Query 899 CTCCATGGTTTGGCTAATCAGGAAGTTTTGCTTTGGATCAAATCAGTTGTCGAGGAATGT 958
|||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||
Sbjct 1053 CTCCATGGTTTGGCTAATCAGGAAGTTTTGCTGTGGATCAAATTAGTTGTTGAGGAATGT 1112
Query 959 GGAGAAAATATTTCAAAGGAACAGCTAAAAGATTATGTCTGGAAAACGTTAAACAGTGGC 1018
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 GGAGAAAGTATATCAAAGGAACAGCTAAAAGATTATGTCTGGAAAACGTTAAACAGTGGC 1172
Query 1019 AAGGTTGTTCCAGGATATGGCCATGGTGTTTTACGTAAACCGGATCCAAGATATGTATGC 1078
|||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||
Sbjct 1173 AAGGTTGTTCCAGGATATGGCCATGGTGTTTTGCGTAAAACGGATCCAAGATATATATGC 1232
Query 1079 CAAAGAGAGTTTGCCTTGAAGCATCTACCTGATGATCCTCTTTTTCAGCTGGTCTCAAAG 1138
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 CAAAGAGAGTTTGCCTTGAAGCATCTACCTGATGATCCTCTTTTTCAGCTGGTCTCAAAA 1292
Query 1139 CTTTATGAAGTGGTGCCTCCTATTCTAACCGAGCTGGGAAAGGTCAAGAACCCGTGGCCT 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 CTTTATGAAGTGGTGCCTCCTATTCTAACCGAGCTGGGAAAGGTCAAGAACCCGTGGCCT 1352
Query 1199 AACGTTGATGCTCATAGTGGAGTGCTGCTGAACTACTATGGTCTAACCGAAGCAAGATAC 1258
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1353 AACGTTGATGCTCATAGCGGAGTGCTTCTGAACTACTATGGTCTAACCGAAGCAAGATAC 1412
Query 1259 TACACAGTGCTTTTTGGAGTCTCAAGAAGTCTTGGCATCTGTTCGCAGCTGATATGGGAC 1318
||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1413 TACACGGTGCTTTTTGGCGTCTCAAGAAGTCTTGGAATCTGCTCGCAGCTGATATGGGAC 1472
Query 1319 AGGGCACTTGGACTGCCACTTGAGAGACCAAAGAGTGTAAACATGGACTGGCTCGATAAC 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 AGGGCACTTGGACTGCCACTTGAGAGACCAAAGAGTGTAAACATGGACTGGCTCGATAAC 1532
Query 1379 TTCATGCTCTTGAACCACTAAGTTAATCGCTCACTGTTGTTGGTCGAGGTTCTCTCTTTC 1438
|||| || |||||||| ||||||||||| || |||| |||||||| |||||||||||||
Sbjct 1533 TTCACGCGCTTGAACCGCTAAGTTAATCCCTGACTGATGTTGGTCAAGGTTCTCTCTTTT 1592
Query 1439 ATCAAACCAGCCTTCTCTTCCATTTGATTGGGTAGCTTTTGGCACTTTTAGAGAGAAAAA 1498
|||| ||||||||||||||||||||||||||||||||| | | | | | | |||||
Sbjct 1593 ATCACTTCAGCCTTCTCTTCCATTTGATTGGGTAGCTTTTAG-AGAT--A-A-A-AAAAA 1646
Query 1499 GAACGATTTTTCGTCTAAATTTTGTTTCTACAGAGTTTTCATTTTGGTACTTCTTCAAAA 1558
|||||||||||||| |||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct 1647 -AACGATTTTTCGTCGAAATTTTGTT-CTACAGAGTTTTCATTTTGGTTCTTCTGCAAAA 1704
Query 1559 ACAATAATGTCAAACAAGTGAAGAAACAGTCTTTCTTAGATTGAGACACC 1608
||||||| ||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1705 ACAATAAAGTCAAACAAGTAAAGAAACAGTCTTTCTCAGATTGAGACACC 1754
> AT2G44350.2 | Symbols: ATCS, CSY4 | Citrate synthase family protein
| chr2:18316278-18320789 FORWARD LENGTH=1822
Length=1822
Score = 1395 bits (755), Expect = 0.0
Identities = 1201/1410 (85%), Gaps = 56/1410 (4%)
Strand=Plus/Plus
Query 2 AGAATGGTGGTTTTT-CGTAGCTTATCAGCCATTT-CAAGGCTTCGGTCTCGAG--CAGT 57
|||||||| |||||| || ||| |||| ||| ||| | ||||| ||||||| | |||
Sbjct 130 AGAATGGT-GTTTTTCCGCAGCGTATCGGCC-TTTACTAGGCTGAGGTCTCGCGTCCAGG 187
Query 58 G-CAACAATCCTCACTTAGCAACTCCGTCAGATGG---C---T-C-CA-CTCTTCTGAAT 107
| |||||||| ||||| ||||| || ||||||||| | | | | |||| | ||
Sbjct 188 GCCAACAATCTTCACTCAGCAATTCTGTCAGATGGATTCAGATGCAGAGCTCTACCGACC 247
Query 108 TGGACTTGAAGTCGCAGATGCAAGAGATCATTCCAGAACAACAGGACCGTTTGAAGAAAC 167
||||| ||||||||||| |||||||| | ||||| ||||| ||||||||| |||||||||
Sbjct 248 TGGACCTGAAGTCGCAGCTGCAAGAGTTAATTCCGGAACAGCAGGACCGTCTGAAGAAAC 307
Query 168 TGAAATCAGAACATGGAAAGGTCCCAGTGGGGAACATCACCGTTGATATGG-TACTTGGT 226
|||| ||||||||||| ||||||| | |||| |||||||| |||||||||| || |||||
Sbjct 308 TGAAGTCAGAACATGGGAAGGTCCAACTGGGAAACATCACTGTTGATATGGTTA-TTGGT 366
Query 227 GGAATGAGAGGGATGACTGGATTACTCTGGGAAACCTCATTGCTTGATGCAGATGAGGGA 286
||||||||||||||||||||||| || |||||||||||||||||||| | || |||||
Sbjct 367 GGAATGAGAGGGATGACTGGATTGCTTTGGGAAACCTCATTGCTTGACCCGGAAGAGGGT 426
Query 287 ATACGCTTTAGAGGCA-TGTCGATTCCTGAATGCCAAAAAGTATTACCTTCAGCTCAGTC 345
|| |||||||| || | ||||||||||||| ||||| |||||||||||| | || |||||
Sbjct 427 ATTCGCTTTAG-GGGATTGTCGATTCCTGAGTGCCAGAAAGTATTACCTACTGCCCAGTC 485
Query 346 TGGAGAAGAGCCCTTGCCTGAGGGTCTTCTGTGGCTTCTGTTAACTGGAAAGGTGCC-AA 404
||||| || || || || ||||||||| |||||||||| |||||||||||||| || |
Sbjct 486 TGGAGCTGAACCATTACCGGAGGGTCTTTTGTGGCTTCTCTTAACTGGAAAGGTACCTAG 545
Query 405 CTAAAGAGCAAGTT-AATGCTTTGTCAAAAGAGTTGGCTCATCGTGCGGCTGTGCC---- 459
| |||||||||||| || || |||| ||||| ||||| | ||||| ||||||||
Sbjct 546 C-AAAGAGCAAGTTGAA-GCACTGTCGAAAGACTTGGCGAACCGTGCTGCTGTGCCAGAT 603
Query 460 -A---G--C--T---ATAGATGCCCTGCCTTCAACAGCTCATCCAATGACTCAATTTGCT 508
| | | | || ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 604 TATGTGTACAATGCCATCGATGCTCTGCCTTCCACAGCTCATCCAATGACTCAATTTGCT 663
Query 509 AGTGGGGTTATGGCCCTTCAGGTTCAAAGTGAGTTTCAGAAGGCATATGAGCAGGGTGAT 568
|| || ||||||||||| ||||| |||||||||||||| |||||||||||| | | ||
Sbjct 664 AGCGGTGTTATGGCCCTCCAGGTGCAAAGTGAGTTTCAAAAGGCATATGAG-AATG-GA- 720
Query 569 ATTCATAAGTCAAAGTACTGGGAGCCAACCTTTGAGGA-TGCACTAAACTTGATTGCTCG 627
|||||||||||||||| |||||||||||| | |||||| ||| || ||| ||||||||||
Sbjct 721 ATTCATAAGTCAAAGTTCTGGGAGCCAACATATGAGGATTGC-CTCAACCTGATTGCTCG 779
Query 628 TGTTCCTGTTCTAGCTTCATACGTTTATCGAAGGATGTACAAGGATGGTAGCA-T-CATT 685
|||||||||| ||||| |||| ||||||||||||||||| ||| ||||| | | | ||||
Sbjct 780 TGTTCCTGTTGTAGCTGCATATGTTTATCGAAGGATGTATAAGAATGGT-G-ATTCCATT 837
Query 686 CCATTAGATGATTCTTTGGATTATGGTGCAAATTTTTCACACATGCTGGGATATGATAG- 744
|| | |||| | |||||||||||||||||||||||||| |||||| |||||| |||| |
Sbjct 838 CCCTCAGATAAATCTTTGGATTATGGTGCAAATTTTTCCCACATGTTGGGATTTGAT-GA 896
Query 745 TCCTCAGATGAAAGAACTCATGAGGCTTTATGTCACTATCCACAGTGATCATGAAGGTGG 804
| || ||||||| |||||||||||||| |||| |||||||||||||||||||||||
Sbjct 897 TGAAAAGGTGAAAGAGCTCATGAGGCTTTACATCACCATCCACAGTGATCATGAAGGTGG 956
Query 805 AAATGTTAGTGCTCACGCTGGTCACCTGGTTGGGAGTGCACTTTCAGATCCATATCTTTC 864
|||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 957 AAATGTTAGTGCTCACACTGGTCACCTGGTTGGTAGTGCACTTTCAGACCCATATCTGTC 1016
Query 865 ATTTGCAGCTGCTTTAAATGGTTTAGCTGGTCCACTCCATGGTTTGGCTAATCAGGAAGT 924
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1017 ATTTGCAGCTGCATTAAATGGTTTAGCTGGGCCACTCCATGGTTTGGCTAATCAGGAAGT 1076
Query 925 TTTGCTTTGGATCAAATCAGTTGTCGAGGAATGTGGAGAAAATATTTCAAAGGAACAGCT 984
||||||||||||||||||||| || ||||||||||||||| |||| ||||| |||||| |
Sbjct 1077 TTTGCTTTGGATCAAATCAGTCGTAGAGGAATGTGGAGAAGATATATCAAAAGAACAGTT 1136
Query 985 AAAAGATTATGTCTGGAAAACGTTAAACAGTGGCAAGGTTGTTCCAGGATATGGCCATGG 1044
||||| ||||| |||||||| |||||||||||||||||| |||| |||||||| || ||
Sbjct 1137 GAAAGAATATGTTTGGAAAACATTAAACAGTGGCAAGGTTATTCCGGGATATGGTCACGG 1196
Query 1045 TGTTTTACGTAA-ACCGGATCCAAGATATGTATGCCAAAGAGAGTTTGCCTTGAAGCATC 1103
|||| | || || || | ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1197 TGTTCTGCGCAATACTG-ATCCAAGATATGTATGCCAAAGAGAATTTGCCTTGAAGCATC 1255
Query 1104 TACCTGATGATCCTCTTTTTCAGCTGGTCTCAAAGCTTTATGAAGTGGTGCCTCCTATTC 1163
||||||| || |||||||| |||||||| ||||||||||||||||| ||||||||| |||
Sbjct 1256 TACCTGACGACCCTCTTTTCCAGCTGGTGTCAAAGCTTTATGAAGTTGTGCCTCCTGTTC 1315
Query 1164 TAACCGAGCTGGGAAAGGTCAAGAACCCGTGGCCTAACGTTGATGCTCATAGTGGAGTGC 1223
| || ||||| |||||||| |||||||||||||| || ||||||||||| ||||| || |
Sbjct 1316 TCACTGAGCTTGGAAAGGTGAAGAACCCGTGGCCAAATGTTGATGCTCACAGTGGGGT-C 1374
Query 1224 T-GCTGAACTACTATGGTCTAACCGAAGCAAGATACTACACAGTGCTTTTTGGAGTCTCA 1282
| ||||||| |||||||||||||||||||||| |||||||| ||||| ||||| || |||
Sbjct 1375 TTGCTGAACCACTATGGTCTAACCGAAGCAAGGTACTACACCGTGCTCTTTGGTGTTTCA 1434
Query 1283 AGAAGTCTTGGCATCTGTTCGCAGCTGATATGGGACAGGGCACTTGGACT-GCCACTTGA 1341
|| |||||||||||||| || ||||| ||||||||| | || |||||||| || ||||||
Sbjct 1435 AGGAGTCTTGGCATCTGCTCTCAGCTTATATGGGACCGAGCTCTTGGACTTGC-ACTTGA 1493
Query 1342 GAGACCAAAGAGTGTAAACATGGACTGGCT 1371
||| ||||||||||| | ||||||||||||
Sbjct 1494 GAGGCCAAAGAGTGTTACCATGGACTGGCT 1523
> AT2G11270.1 | Symbols: | citrate synthase-related | chr2:4484720-4485308
FORWARD LENGTH=252
Length=252
Score = 171 bits (92), Expect = 3e-41
Identities = 116/127 (91%), Gaps = 3/127 (2%)
Strand=Plus/Plus
Query 149 CAGGACCGTTTGAAGAAACTGAAATCAGAACATGGAAAGGTCCCAGTGGGGAACATCACC 208
|||||||||| |||||||||||||| | ||||||||||||| ||||||||||||||||||
Sbjct 127 CAGGACCGTTCGAAGAAACTGAAATTAAAACATGGAAAGGTTCCAGTGGGGAACATCACC 186
Query 209 GTTGATATGGTACTTGGTGGAATGAGAGGGATGACTGGATTACTC--TGGGAAACCTCAT 266
||||||||||||||||||||||||||||||||||| ||||||| | | | || ||||||
Sbjct 187 GTTGATATGGTACTTGGTGGAATGAGAGGGATGACCGGATTACACAATCGTAA-CCTCAT 245
Query 267 TGCTTGA 273
|||||||
Sbjct 246 TGCTTGA 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79417262190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5