BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486477
Length=1602
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60120.1 | Symbols: BGLU27 | beta glucosidase 27 | chr3:2220... 2529 0.0
> AT3G60120.1 | Symbols: BGLU27 | beta glucosidase 27 | chr3:22205947-22208952
FORWARD LENGTH=1809
Length=1809
Score = 2529 bits (1369), Expect = 0.0
Identities = 1530/1608 (95%), Gaps = 9/1608 (1%)
Strand=Plus/Plus
Query 1 ATGTACTCGAAGAAAAACTCTTTCGGCCGATCTGATTTTCCTGAGGGTTTCCTCTTT-GG 59
|||||||||||||||||||| ||||||||||| ||||| || ||||||||||| ||| ||
Sbjct 205 ATGTACTCGAAGAAAAACTCGTTCGGCCGATCAGATTTCCCAGAGGGTTTCCT-TTTCGG 263
Query 60 TACGGCTTCATCGGCTTACCAATATGAAGGAGCCATAAACGAAGCTCCTCGAGGAGAGAG 119
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 264 TACAGCTTCATCGGCTTACCAATATGAAGGAGCCAGAAACGAAGCTCCTCGAGGAGAGAG 323
Query 120 TGTTTGGGACACATTTGTTCGCAAATATCCAGAGAGAAATTGCTACTCTACCGCAGATCA 179
|||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 324 TGTTTGGGACACATTTGTTCGCAAATATCCAGAGAGAAATTGCTACTCTAATGCGGACCA 383
Query 180 AGCAATCGAGTTCTATAAGCATTACAAAGAAGATATCCAAAGAATGAAGGATATTAACAT 239
|||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||||
Sbjct 384 AGCAATCGAGTTCTATAACCATTACAAGGACGATATCCAGAGAATGAAGGATATTAACAT 443
Query 240 GGATGCTTTCAGATTCTCTATCTCTTGGCC-ACGGATTTTTCCTCTTGGAAAGAAAAGCA 298
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 444 GGATGCTTTCAGATTCTCTATCTCTTGGCCTA-GGATTTTTCCTCTTGGAAAGAAAAGCA 502
Query 299 AAGGAGTGAACAAAGAAGGAAT-CAAATTCTATAACGATCTCATCGATGAGCTCCTCGCG 357
|||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct 503 AAGGAGTGAACAAAGAAGGAATACAA-TTCTATAACGATCTCATCGATGAACTCCTCGCT 561
Query 358 AACGGAATAACACCACTCGCCACTTTATTTCATTGGGATACTCCTCAAGCACTTGAAGAA 417
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 562 AACGGAATAACACCTCTCGCCACTTTATTTCACTGGGATACTCCTCAAGCACTTGAAGAT 621
Query 418 GAATACAATGGATTTTTAAGCGAAGAAGCTGTTGATGACTTCAAAGATTTTGCGGCCTTA 477
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 622 GAATACAGTGGATTTTTAAGCGAAGAAGCTGTTGATGACTTCAAGGATTTTGCGGCCTTA 681
Query 478 TGTTTCGAAGAGTTTGGCGACCGTGTAAAGTTGTGGGTCACACTAAACGAACCATGGGTG 537
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 682 TGTTTTGAGGAGTTTGGCGACCGTGTAAAATTGTGGGTCACACTAAACGAACCATGGGTG 741
Query 538 TATAGTATTGGTGGTTATGACACGGGAAGAAAAGCGCCCGGACGTGCCTCCAAATACATG 597
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 742 TACAGTATTGGTGGCTATGACACGGGAAGAAAAGCCCCCGGACGTGCCTCCAAATACATG 801
Query 598 AACGAAGCAGCCGTGGCCGGAGAATCTGGTCTCGAGGTTTACACTGTTAGTCACAATCTA 657
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 AACGAAGCAGCCGTGGCAGGAGAATCTGGTCTCGAGGTTTACACTGTTAGTCACAATCTA 861
Query 658 CTTCTGGCTCACGCCGAAGCCGTTGAAGTCTTCAGGAACAATCCCAAATGTAAAGATGGC 717
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 862 CTTCTGGCTCACGCCGAAGCTGTTGAGGTCTTCAGGAACAATCCCAAATGTAAAGATGGC 921
Query 718 AAGATCGGTATCGCTCATTGTCCCGTATGGTTCGAACCTTATGACTCGAACTGCCCTAAA 777
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 922 AAGATCGGTATCGCTCATTGTCCCGTATGGTTCGAGCCTTATGACTCGAACTGCCCTAAA 981
Query 778 GATAAAGAAGCATGCGAACGAGCTATGGAGTTTATGTTTGGCTGGCACATGGATCCCACG 837
|| | |||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 982 GACATAGAAGCATGCGAACGAGCTATGGAGTTTATGTTTGGATGGCACATGGATCCTACG 1041
Query 838 GTGTATGGAGATTACCCTGAAGTCATGAAAAAATCGATCGGAAAAAGATTACCATCATTT 897
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 GTGTATGGAGATTACCCTGCAGTCATGAAAAAATCGATCGGAAAAAGATTACCATCATTT 1101
Query 898 ACCGCAGCACAATCCAAGAAGCTTATAGGATCTTTTGATTTCGTTGGGGTGAATTATTAC 957
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1102 ACCGCAGCACAATCCAAGAAGCTTAGAGGATCTTTTGATTTCGTTGGGGTGAATTATTAC 1161
Query 958 AGTGCTTTCTACGTCAAAAATATTGATGAAGTGAACCATGACACTCCCAATTGGAGATCA 1017
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1162 AGTGCTTTCTACGTCAAAAATATTGATGAAGTGAATCATGACAAGCCCAATTGGAGATCA 1221
Query 1018 GACGCACGCATCGAATGGAGAAAACAAAACAAAGCAGGACAGACATTAGGTGTAAGAGGT 1077
|||||||||||||||||||||||| ||||||| ||||| || ||||||||||||||||||
Sbjct 1222 GACGCACGCATCGAATGGAGAAAAGAAAACAACGCAGGGCAAACATTAGGTGTAAGAGGT 1281
Query 1078 GGTTCAGAATGGGACTTTCTATATCCACAAGGACTTAGAAAGTTTCTAAACTATGGCAAG 1137
||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| ||||
Sbjct 1282 GGTTCGGAATGGGACTTTCTATATCCACAAGGCCTTAGAAAGTTTCTAAATTATGCCAAG 1341
Query 1138 AATAAATATGAAAGCCCGAAATTTATGATCACTGAAAACGGACACTGTGATAGAGATTAC 1197
||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct 1342 AATAAATATGAAAGCCCGAAATTTATGATTACCGAAAACGGACACTGTGATATAGATTAT 1401
Query 1198 GAGAAAAAGCCGAAACTTTCTAACTTGATGGACCTGCAAAGGACAGAGTACCACAAGAAA 1257
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1402 GAGAAAAAGCCTAAACTTTCTAACTTGATGGATCTCCAAAGGACAGAGTACCACAAGAAA 1461
Query 1258 CATCTCCAAAGCATCCAACAAGCCATCCAGGAGGATGGAGTTGTAGTTGAAGGATACTTT 1317
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1462 CATCTCCAAAGCATCCAACAAGCCATCCAGGAGGATGGGGTTGTAGTTGAAGGATACTTT 1521
Query 1318 ACTTGGTCGTTACTAGACAATTGTGAATGGAACGCCGGTTATGGAGTCCGATACGGACTA 1377
| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1522 GCGTGGTCATTACTAGACAATTGTGAATGGAACGCCGGTTATGGAGTTCGATATGGACTA 1581
Query 1378 TTCTACGTCGATTACAACAACGGGCTAAAACGTTTTCCAAAAATGTCAGCGATGTGGTTC 1437
|||||||||||||| ||||| || ||||||||||| || |||||||| ||||||||||||
Sbjct 1582 TTCTACGTCGATTATAACAATGGACTAAAACGTTTCCCGAAAATGTCGGCGATGTGGTTC 1641
Query 1438 AAAGAGTTCTTgaagagagaagaagaaattgaagattcagaagaaga-g--tacgtgttg 1494
||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1642 AAAGAATTCTTGAAGAGAGAAGAAGAAATTGAAGATTCAGAAGAAGAAGAGTACGTGTTG 1701
Query 1495 aagtcaacaatgaacaagaagagaTTCTTATTAGCAACTGGTTCATCAGCTTCATGTTTT 1554
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1702 AAGTCAACAATGAACAAGAAGAGATTCTTATTAGCAACTGGTTCATCAGCTTCATGCTTT 1761
Query 1555 ATTCCTAAGATGTCTGAATCTTCTAAAGCCCTCGAACTATTATTCTAG 1602
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1762 ATTCCTAAGATGTCTGAATCTTCTAAAGCCCTCGAACTATTATTCTAG 1809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79116058920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5