BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486484
Length=940
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60966.1 | Symbols: | RING/U-box superfamily protein | chr3... 1168 0.0
AT3G60164.1 | Symbols: | Pseudogene of AT3G60966; protein bind... 453 1e-126
> AT3G60966.1 | Symbols: | RING/U-box superfamily protein | chr3:22552620-22553668
FORWARD LENGTH=1049
Length=1049
Score = 1168 bits (632), Expect = 0.0
Identities = 864/971 (89%), Gaps = 35/971 (4%)
Strand=Plus/Plus
Query 1 AAGAGTATCTCGTTCGTTCTTATAATCACTTGTTAATACTTTTTTGTTGGAGGATGTTGA 60
|||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 48 AAGAGTCTCTCGTTCGTTCTT-CAATCACTTGTTAATAC-TTTTTGTTGGAGGATGTTGA 105
Query 61 CTCAATCGGTGTTTAGATTTTGCGAATATATCACCGTTTCTGTTTTGGTTACCTCCGTCG 120
||||||| |||| |||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 106 CTCAATCTGTGTATAGAGTTTGCGAATATATCACCGTTTCTATTTTGATTACCTCCGTCG 165
Query 121 CGGTCTTCTCTTTAAGATTCGCCACTTTTATCGTCACACGTCCATGGCGTCGCAACCGCA 180
| ||||| ||| ||||||||||||||| ||||||||| |||||||||||||| ||||||
Sbjct 166 CCGTCTTTTCTGAAAGATTCGCCACTTTGATCGTCACAAGTCCATGGCGTCGCCACCGCA 225
Query 181 CATTCACGTTCCGCCGGTGGATAACGGCGGCGAATGACCATTCGTCTCCGCCTTTCTGCG 240
||||||||||||| ||||||| | |||||| || || |||||||||| ||||||||||
Sbjct 226 CATTCACGTTCCGTCGGTGGAGAGCGGCGGAAAACGATGATTCGTCTCCACCTTTCTGCG 285
Query 241 CCGTGTGTTTACAAGAGGCAGAGGAAGGAGAGAAGATGAAGCGATTGACGATTTGCCGCC 300
|||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||| |
Sbjct 286 CCGTGTGTCTACAAGAGGCGGAGGAAGGAGAGAAGATGAGGCGATTGACGATTTGCCGTC 345
Query 301 ACTGTTTCCACGCGGATTGCATAGATACATGGCTCAGTGAAATGTCTAAGTGTCCGTTGT 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 346 ACTGTTTCCACGCGGATTGCATAGATACATGGCTCAGTGAAATGTCCAAGTGTCCGTTGT 405
Query 361 GTAGAGCTCAGATTCCTCCGTTGCCGCCGGCGAGTCCTCTGCTTTTTCTGTTTTTTCCGG 420
|||||||||||||||||||||| |||||||| |||||| |||| || |||||||||||||
Sbjct 406 GTAGAGCTCAGATTCCTCCGTTACCGCCGGCAAGTCCTATGCTCTTACTGTTTTTTCCGG 465
Query 421 CCGGTGTGATTGATTTAATT-AGCAACAAAGAATCTCGACGCGTGGCTCTCTAATTTCGA 479
| ||||||||||||||| || ||||| ||||||||||||||||| ||||||||| |||||
Sbjct 466 CGGGTGTGATTGATTTA-TTCAGCAAGAAAGAATCTCGACGCGTAGCTCTCTAACTTCGA 524
Query 480 ATTCTCTATGTTTCTTAATTCTCTGAC-ACTGTATCACAAAGTTAATGGGCCTTCATGTG 538
||||||| ||||||||||||||||| | | || | ||||||||||||||||||||||
Sbjct 525 ATTCTCTCTGTTTCTTAATTCTCTGTTTATT-TACCTTAAAGTTAATGGGCCTTCATGTG 583
Query 539 ATATCTGAA-GT--CA----------GGC---CC-AAG--CATATACGTAAC--AAT--- 574
|||||||| || || ||| || ||| | |||||||||| |||
Sbjct 584 ATATCTGACTGTTTCACTTATACAAAGGCAGGCCCAAGATCTTATACGTAACGTAATAAT 643
Query 575 CAGTGTGTGTGATATGTTTATTTGCTATCCACATTCATTGCAGAGACTACTAATTATATG 634
||||||||||||||||||||| || |||||||||| |||||| |||||||||| ||||||
Sbjct 644 CAGTGTGTGTGATATGTTTATCTGTTATCCACATTAATTGCATAGACTACTAAATATATG 703
Query 635 CATTTAAGATTACAGTGTATTGAGATGTACTAGAATCTTAAATTCATATGTTTGGTAATC 694
||||||||||||||||||||| |||||||||| | ||||||||||||| | | ||||||
Sbjct 704 CATTTAAGATTACAGTGTATTCAGATGTACTATATTCTTAAATTCATAGGATAAGTAATC 763
Query 695 TGTGAAATGAATGTGGACAATCCACGGACTTCAGCATTTGAATTGAGGTGGG-TCTTTTT 753
| || |||||| || |||||| ||| ||||| |||||||||||||||||||| |||||||
Sbjct 764 TATGCAATGAACGTTGACAATTCACAGACTTTAGCATTTGAATTGAGGTGGGGTCTTTTT 823
Query 754 CTAATGTG-TTTTTTGTATTTTTCCAAAGTTAAGAAAAAGGCAAGTTGATGACGCAGCTA 812
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 CTAATGTACTTTTTTGCATTTTTCCAAAGTTAAGAAAAAGGCAAGTTGATGACGCAGCTA 883
Query 813 AACATAT--GAAGAAAAAGGACCGAAACAGCCAAGAAACTCACGTGGAGATCACTAACAT 870
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 884 AACATATATGAAGAAAAAGGACCGAAACAGCCAAGAAACTCACGTGGAAATCACTAACAT 943
Query 871 ATGTGTCCATGACAAGACATAATTCATACATATTTTTATAATATTTT-GTTTGTCAATTT 929
|||||| ||||||||||||||||||||||| | ||| |||||||||| ||||||||||||
Sbjct 944 ATGTGTACATGACAAGACATAATTCATACAAAATTTAATAATATTTTTGTTTGTCAATTT 1003
Query 930 AACACATATAT 940
|||||||||||
Sbjct 1004 AACACATATAT 1014
> AT3G60164.1 | Symbols: | Pseudogene of AT3G60966; protein binding
/ zinc ion binding | chr3:22232023-22237075 REVERSE LENGTH=444
Length=444
Score = 453 bits (245), Expect = 1e-126
Identities = 382/444 (86%), Gaps = 26/444 (6%)
Strand=Plus/Plus
Query 54 ATGTTGACTCAATCGGTGTTTAGATTTTGCGAATATATCACCGTTTCTGTTTTGGTTACC 113
|||||||||||||| |||| |||||||||||||||||| ||||||||| |||||||||||
Sbjct 1 ATGTTGACTCAATCTGTGTATAGATTTTGCGAATATATAACCGTTTCTATTTTGGTTACC 60
Query 114 TCCGTCGCGGTCTTCTCTTTAAGATTCGCCACTTTTATCGTCACACGTCCATGGCGTCGC 173
||||| || ||||||||| |||||||||||||||| ||| ||| | |||||||| ||||
Sbjct 61 TCCGTTGCTGTCTTCTCTGTAAGATTCGCCACTTTGATCATCATAAGTCCATGGTATCGC 120
Query 174 AACCGCACATTCACGTTCCGCCGGTGGATAACGGCGGCGAATGACCATTCGTCTCCGCCT 233
||||||| || |||||||||||||||| | ||||||| || || ||||||||||||||
Sbjct 121 CACCGCACTTTTACGTTCCGCCGGTGGAGAGCGGCGGCAAACGATGATTCGTCTCCGCCT 180
Query 234 TTCTGCGCCGTGTGTTTACAAGAGGCAGAGGAAGGAGAGAAGATGAAGCGATTGACGATT 293
||||||||||||||| |||||||||| ||||||||||||||||||| |||||| ||||||
Sbjct 181 TTCTGCGCCGTGTGTCTACAAGAGGCGGAGGAAGGAGAGAAGATGAGGCGATTAACGATT 240
Query 294 TGCCGCCACTGTTTCCACGCGGATTGCATAGAT----A------CA------T-G----- 331
||||| ||||||||||||||||||||||||||| | || | |
Sbjct 241 TGCCGTCACTGTTTCCACGCGGATTGCATAGATTGTGAATTGAACACCAACATAGATACA 300
Query 332 -G-CTCAGTGAAATGTCTAAGTGTCCGTTGTGTAGAGCTCAGATTCCTCCGTTGCCGCCG 389
| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 TGGCTCAGTGAAATGTCCAAGTGTCCGTTGTGTAGAGCTCAGATTCCTCCGTTACCGCCG 360
Query 390 GCGAGTCCTCTGCTTTTTCTGTTTTTTCCGGCCGGTGTGATTGATTTAATT-AGCAACAA 448
|| |||||| |||| || |||||||||||||| ||||||||||||||| || ||||| ||
Sbjct 361 GCAAGTCCTATGCTCTTACTGTTTTTTCCGGCGGGTGTGATTGATTTA-TTCAGCAAGAA 419
Query 449 AGAATCTCGACGCGTGGCTCTCTA 472
||||||||||||||| ||||||||
Sbjct 420 AGAATCTCGACGCGTAGCTCTCTA 443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45964244505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5