BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486486
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60180.2 | Symbols: | P-loop containing nucleoside triphosp... 1005 0.0
AT3G60961.1 | Symbols: | P-loop containing nucleoside triphosp... 767 0.0
> AT3G60180.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:22242740-22244061
REVERSE LENGTH=702
Length=702
Score = 1005 bits (544), Expect = 0.0
Identities = 619/656 (94%), Gaps = 2/656 (0%)
Strand=Plus/Plus
Query 1 ACTTGTGCGTGATTCATCGTCACATCTCCTTGATCATGGAAACTCCTGTTGATGCTCTGA 60
|||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| ||
Sbjct 12 ACTTGTGCGTGATTCATCGTCACATCGCCTTGATCATGGAAACTCCTATCGATGCTCCGA 71
Query 61 TTAAGGACGAACATGAAAGCCCTAGGTGGAAGAAGTCAACGGTGGTTTTTGTGTTGGGAG 120
|||||||||||||||| |||||||||||||||| ||||| || |||||||||||||| |
Sbjct 72 ATAAGGACGAACATGAATGCCCTAGGTGGAAGAAATCAACTGTAGTTTTTGTGTTGGGTG 131
Query 121 GTCCTGGAAGTGGAAAAGGTACTCAGTGTGCTAATCTTGTGAAGCACTTTAGCTATACCC 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 132 GTCCTGGAAGTGGAAAAGGTACTCAGTGTGCTAATGTTGTGAAGCACTTTAGCTATACCC 191
Query 181 ATTTTAGTGCTGGTGATCTTCTCAGAGCAGAAATTAAGTCTGGTTCTCAATTTGGAGCCA 240
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 192 ATTTTAGTGCTGGTGATCTTCTCAGAGCAGAAATTAAGTCCGGTTCTGAATTTGGAGCCA 251
Query 241 TGATCCAAAGTATGATTGTTGATGGGAGAATTGTTCCTTCTGAGATCACAGTGAAACTTT 300
|||||||||||||||||| || |||||||| || || ||||||||||||||||||||||
Sbjct 252 TGATCCAAAGTATGATTGCAGAGGGGAGAATAGTGCCGTCTGAGATCACAGTGAAACTTT 311
Query 301 TGTGTAAAGCTATGGAGGAAAGTGGTAATGATAAGTTCCTTATTGATGGTTTTCCTCGCA 360
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 312 TGTGTAAAGCTATGGAGGAAAGTGGTAATGATAAGTTCCTTATTGATGGCTTCCCTCGCA 371
Query 361 ATGAAGAAAATCGGATTGTATTCGAAAATGTTGCTA-ATATCGAGCCTGCTTTTGTTCTC 419
||||||||||||| | ||||||||||||||||||| | ||||||||||||||||||||
Sbjct 372 ATGAAGAAAATCGAAACGTATTCGAAAATGTTGCTAGA-ATCGAGCCTGCTTTTGTTCTA 430
Query 420 TTCTTTGATTGTCCAGAAGAAGAACTAGAAAGACGCATTATGAGCAGGAACCAGGGAAGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 TTCTTTGATTGTCCAGAAGAAGAACTAGAAAGACGCATTATGAGCAGGAACCAGGGAAGA 490
Query 480 GAAGACGATAATATAGAGACGGTAAAGAAGCGATTTAAAGTGTTTGTAGAATCTACCCTC 539
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 491 GAAGACGATAATATAGAGACCATAAAGAAGCGATTTAAAGTGTTTGTTGAATCTACCCTC 550
Query 540 CCTATTATTAGCTACTATGAATCTAAAGGGAAACTTCGAAAGATCAATGCTGCAAAACCC 599
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 551 CCAATTATTAGCTACTACGAATCGAAAGGGAAACTTCGAAAGATCAATGCTGCAAAATCC 610
Query 600 AGCGAAGAGGTTTTCGAGGCAGTCAAAGTTCTATTTGCATCTTAAACTTGACAAGG 655
|||||||||||||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 611 AGCGAAGAGGTTTTCGAGGCTGTCAGAGTTCTATTTGCATCTGAAACTTGACAAGG 666
> AT3G60961.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:22541319-22552529
FORWARD LENGTH=599
Length=599
Score = 767 bits (415), Expect = 0.0
Identities = 549/608 (90%), Gaps = 31/608 (5%)
Strand=Plus/Plus
Query 252 ATGATTGTTGATGGG-AGAATTGTTCCTTCTGAGATCACAGTGAAACTTTTGTGTAAAGC 310
||||||| || ||| ||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1 ATGATTGCAGA-GGGTAGAATAGTGCCGTCTGAGATCACAGTGAAACTTTTGTGTAAAGC 59
Query 311 TATGGAGGAAAG---T---G---GT---AATGATAAGTTCCTTATTGATGGTTTTCCTCG 358
|||||||||||| | | || ||||||||||||||||||||||| || |||||
Sbjct 60 TATGGAGGAAAGTTTTCAAGTTAGTGGCAATGATAAGTTCCTTATTGATGGCTTCCCTCG 119
Query 359 CAATGAAGAAAATCGGATTGTATTCGAAAATGTTGCTA-ATATCGAGCCTGCTTTTGTTC 417
|||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||
Sbjct 120 CAATGAAGAAAATCGGATCGTATTCGAAAATGTTGCTAGA-ATCGAGCCTGCTTTTGTTC 178
Query 418 TCTTCTTTGATTGTCCAGAAGAAGAACTAGAAAGACGCATTATGAGCAGGAACCAGGGAA 477
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TATTCTTTGATTGTCCAGAAGAAGAACTAGAAAGACGCATTATGAGCAGGAACCAGGGAA 238
Query 478 GAGAAGACGATAATATAGAGACGGTAAAGAAGCGATTTAAAGTGTTTGTAGAATCTACCC 537
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 239 GAGAAGACGATAATATAGAGACCATAAAGAAGCGATTTAAAGTGTTTGTTGAATCTACCC 298
Query 538 TCCCTATTATTAGCTACTATGAATCTAAAGGGAAACTTCGAAAGATCAATGCTGCAAAAC 597
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 299 TCCCTATTATTAGCTACTACCAGTCTAAAGGGAAACTTCGAAAGATCAATGCTGCAAAAT 358
Query 598 CCAGCGAAGAGGTTTTCGAGGCAGTCAAAGTTCTATTTGCATCTTAAACTTGACAAGGAT 657
|||||||||||||||||||||| |||| |||||||||||||||| |||||||||||| ||
Sbjct 359 CCAGCGAAGAGGTTTTCGAGGCTGTCAGAGTTCTATTTGCATCTGAAACTTGACAAGCAT 418
Query 658 CATCCATGACTTGGAATCACCAAACAGAACAAGACAGAGACTCCAAAGTCCATG-TG--C 714
|| | |||||||| ||||| |||||||||| ||||||||||||||||| ||| || |
Sbjct 419 CA---AGGACTTGGATTCACCGAACAGAACAAAACAGAGACTCCAAAGTCAATGATGTGC 475
Query 715 CTTGTCGTATACGAAACTAAGTTTACAGATTCATGCTTGTTTCAGTGTTTGTATATGTAA 774
||||||||||||| |||||||||||||||||||||||| | | || ||||||||||
Sbjct 476 CTTGTCGTATACGTAACTAAGTTTACAGATTCATGCTT-----A-T-TT-GTATATGTAA 527
Query 775 ATATCTCTACATTTTACATGTTCTCGTTATACGATA-AGCCAAACTTTCGTCGTAATAAC 833
||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||
Sbjct 528 ATATCTCTACATTTTACATGTTCTCATCATACGATATAGCCAAACTTTCGTCGTAATAAC 587
Query 834 CATATTTT 841
||||||||
Sbjct 588 CATATTTT 595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40991063952
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5