BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486489 Length=937 Score E Sequences producing significant alignments: (Bits) Value AT3G60200.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1332 0.0 AT2G44600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 172 4e-42 > AT3G60200.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44600.1); Has 60 Blast hits to 60 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:22249257-22250520 FORWARD LENGTH=1264 Length=1264 Score = 1332 bits (721), Expect = 0.0 Identities = 884/958 (92%), Gaps = 30/958 (3%) Strand=Plus/Plus Query 1 TTTTATCTTTAATTCTCTTCCGATGAGGTGTAAGAGACACACCGTCGATTTCAGCAGCAG 60 ||||||||| ||||||| ||||||||||||||| ||||||||||||||| |||||||||| Sbjct 42 TTTTATCTTCAATTCTCCTCCGATGAGGTGTAAAAGACACACCGTCGATCTCAGCAGCAG 101 Query 61 CAACGGCGTATGCGCTTCTTGCCTCCGTGAACGTCTCCTCTCCCTCGCCGCTTCCGCCGC 120 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 102 CAACGGCGTTTGCGCTTCTTGCCTCCGTGAACGTCTCCTCTCTCTCGCCGCTTCCGCCGC 161 Query 121 CATCA-CAGCCGCCGTAGAAGATAATCAATC-ACGCAAATC---T---AATAATCATCCT 172 | | | ||||||||||||||||||||||||| | | ||||| | |||||||||||| Sbjct 162 CGT-ATCAGCCGCCGTAGAAGATAATCAATCAAAG-AAATCTAATAACAATAATCATCCT 219 Query 173 CCGCTTTTGATTTTCCCTCGCTCTGTTTCTCCTTATGTAACCCGTAGAAAATCCGACGCC 232 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 220 CCGCTTTTGATTTTCCCTCGCTCTGTTTCTCCTTACGTTACCCGTAGAAAATCCGACGCC 279 Query 233 GGAGTCGGAGTCGGAGGAGATCC--T-CTTACTTCTAATCGGAGATTCATCACCACGCCT 289 |||| | | || ||||||||||| | || ||||||||||||||||||| |||||||| Sbjct 280 GGAG-CCG-GT-GGAGGAGATCCTTTAGTTTCTTCTAATCGGAGATTCATTACCACGCCA 336 Query 290 CAGATAGATCTCGTCGGCTATTCGTGCAAAGATTTCGAATCGAATCGATCTTATAAATCA 349 ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| Sbjct 337 CAGATAGATCTCGTCGGATATTCATGCAAAGATTTCGAATCGAATCGATCAAATAAATCA 396 Query 350 AAACAAGGCAAAAAATTATCTAGATTCTCGAATCTGTTCAGAGCTAGATCTGAAGATTTT 409 |||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 397 AAACAAGGTAAAAAAGTATCTAGATTCTCGAATCTATTCAGAGCTAGATCTGAAGATTTC 456 Query 410 GATTA-CAATCGCAAATCCAACAATCCTAGA-T-T-CTCATGCGACGCGTCTGAGA-Tt- 463 || || ||||| ||||||||||||||||||| | | |||||||||||||||||||| || Sbjct 457 GA-TACCAATCCCAAATCCAACAATCCTAGATTCTCCTCATGCGACGCGTCTGAGATTTC 515 Query 464 -tcttcttcttcttcttcACGTTCATGGATCTCGACGATTCTCTCCACCGGTCGCCGTAA 522 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 516 ATCTTCTTCTTCCTCTTCACGTTCATGGATCTCGACGATTCTCTCCACCGGTCGACGTAA 575 Query 523 AAAGCAACCAACCACCGCGTGTTATATCGAAGACGTAATCGCTG-GTCGTAGACCTCAAC 581 |||||||||||||||||||||||| ||||||||||| ||||||| | ||||||||||||| Sbjct 576 AAAGCAACCAACCACCGCGTGTTACATCGAAGACGTTATCGCTGCG-CGTAGACCTCAAC 634 Query 582 GGATATACTGTAGAGGAATGTCACCTGCGAGAGATACGGAACCAGAGCCGTCGTCGGAAT 641 | ||||||||||||||||||||||||| |||||||||||||| |||| |||| |||||| Sbjct 635 GTATATACTGTAGAGGAATGTCACCTGTAAGAGATACGGAACCGGAGCAGTCGGCGGAAT 694 Query 642 CAATTGAGGAATTGAGAAGAACTCCGGCGACGAAAACTCCGGGAAGGAGGAAGATTGCGA 701 |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 695 CAATCGAGGAATTGAGGAGAACTCCGGCGACGAAAACTCCGGGAAGGAGGAAGATTGCG- 753 Query 702 AT-GGGATAGGGAAGA-CTATGTCGGGGATGGCTTTTTGCTTGAGTCCGTTGGTGAGAGC 759 || ||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| Sbjct 754 ATGGGGATAGGGAAGAGC-ATGTCGGGGATGGCTTTTTGTTTGAGTCCGTTGGTGAGAGC 812 Query 760 TAGTCCTAATTGTCCGTTTAAACGGAAAATGAGATTTCCATCGGAATTTGGTACTTCCGG 819 ||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||| || Sbjct 813 TAGTCCTAACTGTCCGTTTAAACGGAAAATGAGATTTCCATCGGAGTTTGGTAATTCTGG 872 Query 820 GGAGGTGACGGCGGTGCCGGGAAAGCCTCATATATCAGCAGCGGCGTCGTTTTGTGCAAA 879 |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 873 GGAGGTAACGGCGGTGCCGGAAAAGCCTCATATATCAGCAGCGGCGTCGTTTTGTGCAAA 932 Query 880 CAGATCGAAGAAGCTTGTGGATTTAGGTAGAGTTGATCGCCGCCGTTGAGtttttttA 937 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 933 TAGATCGAAGAAGCTTGTGGATTTAGGTAGAGTTGATCGCCGCCGTTGAGTTTTTTTA 990 > AT2G44600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60200.1); Has 56 Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:18408695-18410053 FORWARD LENGTH=1359 Length=1359 Score = 172 bits (93), Expect = 4e-42 Identities = 291/382 (76%), Gaps = 31/382 (8%) Strand=Plus/Plus Query 573 GACCTCA-ACGGATATACTGTAGAGGAATGTCACCTGCGAGAGA-T--ACG--GAACCA- 625 ||||| | || || ||| |||||||||||||| || ||| |||| | ||| |||| | Sbjct 731 GACCT-AGACAGAGATATTGTAGAGGAATGTCGCCGGCGGGAGATTCAACGACGAACGAT 789 Query 626 G-AGCCGTCGTCGGAATCAATTGA-GGA-ATTGAGAAGAACTCCGGCGACGAAAACTCCG 682 | | | || | |||||| | | ||| ||| |||||||| |||| || | ||||||| Sbjct 790 GAATCAGTTG-AGGAATC--TCCAGGGAGATTAAGAAGAACGCCGGTGATGGGAACTCCG 846 Query 683 GGAAGGAGGAAGATTGCGA--A-TGGGATAGGGAAG-ACTATGTCGGGGATGGCTTTTTG 738 ||||||| |||| |||| | |||||| || || | | | || |||||||||||||| Sbjct 847 GGAAGGAAAAAGACGGCGACGATTGGGAT-TGGTAGAAGTGTATCAGGGATGGCTTTTTG 905 Query 739 CTTGAGTCCGTTGGTGAGAGCTAGTCCTAATTGTCCGTT-TAAAC-GGAAAATGAGATTT 796 ||| ||||| || |||||||||| ||||| ||| | || | ||| ||||| || |||| Sbjct 906 CTTAAGTCCATTAGTGAGAGCTAAACCTAACTGTTC-TTCT-AACTGGAAAGCGAAATTT 963 Query 797 CCATCGGAATTTGG-TACTTCCGGGGAGGTGACGGCGGTGCCGG-GAAAGCCTCATATAT 854 || |||| ||||| || |||||| || ||| | | |||| | |||||||| ||| Sbjct 964 CCGCCGGATTTTGGATA-TTCCGGTGAATTGAAATC--T-CCGGCG-AAGCCTCACCTAT 1018 Query 855 CAGCAGCGGCGTCGTTTTGTGCAAACAGATCGAAGAAGCTTGTGGATTTAGGTAGAGTTG 914 || | |||||||| ||||| | ||| | || |||||||||||||||||||||||||||| Sbjct 1019 CAACGGCGGCGTCTTTTTGCGGTAACCGGTCTAAGAAGCTTGTGGATTTAGGTAGAGTTG 1078 Query 915 ATCGCCGCCGTTGAGttttttt 936 ||| |||||||||| ||||||| Sbjct 1079 ATCACCGCCGTTGA-TTTTTTT 1099 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45813542064 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5