BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486489
Length=937
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60200.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1332 0.0
AT2G44600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 172 4e-42
> AT3G60200.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G44600.1);
Has 60 Blast hits to 60 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 51; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:22249257-22250520
FORWARD LENGTH=1264
Length=1264
Score = 1332 bits (721), Expect = 0.0
Identities = 884/958 (92%), Gaps = 30/958 (3%)
Strand=Plus/Plus
Query 1 TTTTATCTTTAATTCTCTTCCGATGAGGTGTAAGAGACACACCGTCGATTTCAGCAGCAG 60
||||||||| ||||||| ||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 42 TTTTATCTTCAATTCTCCTCCGATGAGGTGTAAAAGACACACCGTCGATCTCAGCAGCAG 101
Query 61 CAACGGCGTATGCGCTTCTTGCCTCCGTGAACGTCTCCTCTCCCTCGCCGCTTCCGCCGC 120
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 102 CAACGGCGTTTGCGCTTCTTGCCTCCGTGAACGTCTCCTCTCTCTCGCCGCTTCCGCCGC 161
Query 121 CATCA-CAGCCGCCGTAGAAGATAATCAATC-ACGCAAATC---T---AATAATCATCCT 172
| | | ||||||||||||||||||||||||| | | ||||| | ||||||||||||
Sbjct 162 CGT-ATCAGCCGCCGTAGAAGATAATCAATCAAAG-AAATCTAATAACAATAATCATCCT 219
Query 173 CCGCTTTTGATTTTCCCTCGCTCTGTTTCTCCTTATGTAACCCGTAGAAAATCCGACGCC 232
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 220 CCGCTTTTGATTTTCCCTCGCTCTGTTTCTCCTTACGTTACCCGTAGAAAATCCGACGCC 279
Query 233 GGAGTCGGAGTCGGAGGAGATCC--T-CTTACTTCTAATCGGAGATTCATCACCACGCCT 289
|||| | | || ||||||||||| | || ||||||||||||||||||| ||||||||
Sbjct 280 GGAG-CCG-GT-GGAGGAGATCCTTTAGTTTCTTCTAATCGGAGATTCATTACCACGCCA 336
Query 290 CAGATAGATCTCGTCGGCTATTCGTGCAAAGATTTCGAATCGAATCGATCTTATAAATCA 349
||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 337 CAGATAGATCTCGTCGGATATTCATGCAAAGATTTCGAATCGAATCGATCAAATAAATCA 396
Query 350 AAACAAGGCAAAAAATTATCTAGATTCTCGAATCTGTTCAGAGCTAGATCTGAAGATTTT 409
|||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 397 AAACAAGGTAAAAAAGTATCTAGATTCTCGAATCTATTCAGAGCTAGATCTGAAGATTTC 456
Query 410 GATTA-CAATCGCAAATCCAACAATCCTAGA-T-T-CTCATGCGACGCGTCTGAGA-Tt- 463
|| || ||||| ||||||||||||||||||| | | |||||||||||||||||||| ||
Sbjct 457 GA-TACCAATCCCAAATCCAACAATCCTAGATTCTCCTCATGCGACGCGTCTGAGATTTC 515
Query 464 -tcttcttcttcttcttcACGTTCATGGATCTCGACGATTCTCTCCACCGGTCGCCGTAA 522
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 516 ATCTTCTTCTTCCTCTTCACGTTCATGGATCTCGACGATTCTCTCCACCGGTCGACGTAA 575
Query 523 AAAGCAACCAACCACCGCGTGTTATATCGAAGACGTAATCGCTG-GTCGTAGACCTCAAC 581
|||||||||||||||||||||||| ||||||||||| ||||||| | |||||||||||||
Sbjct 576 AAAGCAACCAACCACCGCGTGTTACATCGAAGACGTTATCGCTGCG-CGTAGACCTCAAC 634
Query 582 GGATATACTGTAGAGGAATGTCACCTGCGAGAGATACGGAACCAGAGCCGTCGTCGGAAT 641
| ||||||||||||||||||||||||| |||||||||||||| |||| |||| ||||||
Sbjct 635 GTATATACTGTAGAGGAATGTCACCTGTAAGAGATACGGAACCGGAGCAGTCGGCGGAAT 694
Query 642 CAATTGAGGAATTGAGAAGAACTCCGGCGACGAAAACTCCGGGAAGGAGGAAGATTGCGA 701
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 CAATCGAGGAATTGAGGAGAACTCCGGCGACGAAAACTCCGGGAAGGAGGAAGATTGCG- 753
Query 702 AT-GGGATAGGGAAGA-CTATGTCGGGGATGGCTTTTTGCTTGAGTCCGTTGGTGAGAGC 759
|| ||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct 754 ATGGGGATAGGGAAGAGC-ATGTCGGGGATGGCTTTTTGTTTGAGTCCGTTGGTGAGAGC 812
Query 760 TAGTCCTAATTGTCCGTTTAAACGGAAAATGAGATTTCCATCGGAATTTGGTACTTCCGG 819
||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||| ||
Sbjct 813 TAGTCCTAACTGTCCGTTTAAACGGAAAATGAGATTTCCATCGGAGTTTGGTAATTCTGG 872
Query 820 GGAGGTGACGGCGGTGCCGGGAAAGCCTCATATATCAGCAGCGGCGTCGTTTTGTGCAAA 879
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 873 GGAGGTAACGGCGGTGCCGGAAAAGCCTCATATATCAGCAGCGGCGTCGTTTTGTGCAAA 932
Query 880 CAGATCGAAGAAGCTTGTGGATTTAGGTAGAGTTGATCGCCGCCGTTGAGtttttttA 937
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 TAGATCGAAGAAGCTTGTGGATTTAGGTAGAGTTGATCGCCGCCGTTGAGTTTTTTTA 990
> AT2G44600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G60200.1); Has 56
Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria
- 0; Metazoa - 2; Fungi - 0; Plants - 52; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink). | chr2:18408695-18410053
FORWARD LENGTH=1359
Length=1359
Score = 172 bits (93), Expect = 4e-42
Identities = 291/382 (76%), Gaps = 31/382 (8%)
Strand=Plus/Plus
Query 573 GACCTCA-ACGGATATACTGTAGAGGAATGTCACCTGCGAGAGA-T--ACG--GAACCA- 625
||||| | || || ||| |||||||||||||| || ||| |||| | ||| |||| |
Sbjct 731 GACCT-AGACAGAGATATTGTAGAGGAATGTCGCCGGCGGGAGATTCAACGACGAACGAT 789
Query 626 G-AGCCGTCGTCGGAATCAATTGA-GGA-ATTGAGAAGAACTCCGGCGACGAAAACTCCG 682
| | | || | |||||| | | ||| ||| |||||||| |||| || | |||||||
Sbjct 790 GAATCAGTTG-AGGAATC--TCCAGGGAGATTAAGAAGAACGCCGGTGATGGGAACTCCG 846
Query 683 GGAAGGAGGAAGATTGCGA--A-TGGGATAGGGAAG-ACTATGTCGGGGATGGCTTTTTG 738
||||||| |||| |||| | |||||| || || | | | || ||||||||||||||
Sbjct 847 GGAAGGAAAAAGACGGCGACGATTGGGAT-TGGTAGAAGTGTATCAGGGATGGCTTTTTG 905
Query 739 CTTGAGTCCGTTGGTGAGAGCTAGTCCTAATTGTCCGTT-TAAAC-GGAAAATGAGATTT 796
||| ||||| || |||||||||| ||||| ||| | || | ||| ||||| || ||||
Sbjct 906 CTTAAGTCCATTAGTGAGAGCTAAACCTAACTGTTC-TTCT-AACTGGAAAGCGAAATTT 963
Query 797 CCATCGGAATTTGG-TACTTCCGGGGAGGTGACGGCGGTGCCGG-GAAAGCCTCATATAT 854
|| |||| ||||| || |||||| || ||| | | |||| | |||||||| |||
Sbjct 964 CCGCCGGATTTTGGATA-TTCCGGTGAATTGAAATC--T-CCGGCG-AAGCCTCACCTAT 1018
Query 855 CAGCAGCGGCGTCGTTTTGTGCAAACAGATCGAAGAAGCTTGTGGATTTAGGTAGAGTTG 914
|| | |||||||| ||||| | ||| | || ||||||||||||||||||||||||||||
Sbjct 1019 CAACGGCGGCGTCTTTTTGCGGTAACCGGTCTAAGAAGCTTGTGGATTTAGGTAGAGTTG 1078
Query 915 ATCGCCGCCGTTGAGttttttt 936
||| |||||||||| |||||||
Sbjct 1079 ATCACCGCCGTTGA-TTTTTTT 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45813542064
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5