BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486490
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60210.1 | Symbols: | GroES-like family protein | chr3:2225... 1022 0.0
> AT3G60210.1 | Symbols: | GroES-like family protein | chr3:22251223-22252898
REVERSE LENGTH=826
Length=826
Score = 1022 bits (553), Expect = 0.0
Identities = 663/712 (93%), Gaps = 23/712 (3%)
Strand=Plus/Plus
Query 1 GCAACAAGAGAAGTCTGTAGAAGAAAGGTTTGTCCAACAACACAGCAAGAACGAGCGAAT 60
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 58 GCATCAAGAGAAGTCTGTAGAAGAAAGGTTTGTCCAACAACACAGCAAGCACGAGCGAAT 117
Query 61 CTCCTCAACTT-CCCAACCTAAAAATAGCTTGCCGTGTCGTGACTCCTCGCCGAGTAGGA 119
||||||||||| |||||||| ||||||| |||||||||||||| ||| ||||||||||
Sbjct 118 CTCCTCAACTTCCCCAACCT---AATAGCTCGCCGTGTCGTGACTACTCACCGAGTAGGA 174
Query 120 ACCTAACCTTATCCAATGGCTTCGACTTTCATTACAGTACCTAAACCTTTCTTGTCTCTT 179
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||
Sbjct 175 ACCTAACCTTATCCAATGGCTTCGAGTTTCATTACAGTACCTAAACCCTTCTTGTC-CTT 233
Query 180 -CCCATCAAAACCAATGCTCCTACTCTACCTCACCAGACCCTTCTCGGTATTCGAAGAAA 238
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 234 CCCCATCAAAACCAATGCTCCTACTCTACCTCAGCAGACCCTTCTCGGAATTCGAAGAAA 293
Query 239 TTCCCTTAGAATTAACGCCGTTTCCACCAAATGGGAACCGGCAAAGGTTGTTCCACAAGC 298
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 294 TTCCTTTAGAATTAACGCCGTTTCCACCAAATGGGAACCGGCAAAGGTTGTACCACAAGC 353
Query 299 AGACAGGGTCCTTGTCCGTCTTGAAGTGCTTCCTGAGAAATCCTCAGGAGGAGTATTGTT 358
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 354 AGACAGGGTCCTTGTCCGCCTTGAAGTGCTTCCTGAGAAATCCTCAGGAGGAGTACTGTT 413
Query 359 ACCTAAATCAGCTGTGAAATTCGAGAGGTACCTAACAGGCGAGGTTGTCTCTGTTGGGTC 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GCCTAAATCAGCTGTGAAATTCGAGAGGTACCTAACAGGCGAGGTTGTCTCTGTTGGGTC 473
Query 419 TGAGGTTGGGGAAGTGGAACCTGGCAAGAAGGTTGTGTTCTCTGATATGAGCGCCTATGA 478
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 474 TGAGGTTGGGGAAGTGGAACCTGGCAAGAAGGTTTTGTTCTCTGATATGAGCGCCTATGA 533
Query 479 GGTTGATTTTGGAACAGA---TGCTAAGCATTGCTTTTGCAAAGAAAGCGACTTGTTAGC 535
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 534 GGTTGATTTTGGAACAGAAGATGCTAAGCATTGCTTTTGCAAAGAAAGCGACTTGTTAGC 593
Query 536 AATCGTCCAGTGAAAAGTAGCATTGAAGTTGTGCATTCAATAATATCATATACCAAAAAG 595
|||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| ||
Sbjct 594 TATCGTCCAGTGAAAAGTAGCATCGAAGTTGTGCATTCAATGATATCATCTACCAAAGAG 653
Query 596 ATTTCCAGGTTTTGTTTTTCTTGTAATTTCAGTGACATCA---TATGTTCTGtttttttG 652
|||| |||||| |||||||||||||||||| || ||||||||||| ||| |
Sbjct 654 -TTTCT-GGTTTT------CTTGTAATTTCAGTGACAGCAGCATATGTTCTGTTGTTT-G 704
Query 653 CA-TCTCATGTAAGAGCTCAAAGTGAAGATTGATCGGAAACCGAAATTGTTA 703
| | ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 705 -AGTTTCATGAAAGAGCTCAAAGTGGAGATTGATCGGAAACCGAAATTGTTA 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5