BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486491
Length=1299
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60220.1 | Symbols: ATL4, TL4 | TOXICOS EN LEVADURA 4 | chr3... 1618 0.0
> AT3G60220.1 | Symbols: ATL4, TL4 | TOXICOS EN LEVADURA 4 | chr3:22254598-22256086
REVERSE LENGTH=1489
Length=1489
Score = 1618 bits (876), Expect = 0.0
Identities = 1111/1216 (91%), Gaps = 50/1216 (4%)
Strand=Plus/Plus
Query 114 ATGGATTCTCTCATCAATCCCAGCCATGGCGGAGGAAACTACGATTCTCACTCTTCTTCT 173
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 ATGGAATCTCTCATCAATCCCAGCCATGGCGGAGGAAACTACGATTCTCACTCTTCTTCT 352
Query 174 CTCGATAGTCTCAAACCAAGCGTACTAGTCATCATTCTCATCCTTCTAATGACTCTTCTC 233
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 353 CTCGATAGTCTCAAACCAAGCGTACTAGTCATCATTCTCATTCTCCTCATGACTCTTCTC 412
Query 234 ATCTCCGTCTCCATTTGTTTCCTCCTCCGTTGTCTCAATCGCTGTAGCCACCGCTCCGTT 293
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 413 ATCTCCGTTTCCATTTGCTTCCTCCTCCGCTGTCTCAATCGCTGTAGCCACCGCTCCGTT 472
Query 294 ATCCCTCCGTCGTCATCTTCCACTTCCGCCGCAACCGTAACTTCCGATTCCCGACGATTC 353
|||||| | ||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 473 CTCCCTCT-T--TCATCTTCCTCTTCCGTCGCAACCGTAACTTCCGATTCCCGACGATTC 529
Query 354 TCTGGACATCGAGTCTCTCCCGAAACAGAACGATCCTCGGTGCTTGATTCGCTTCCGATT 413
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 530 TCTGGACATCGAGTCTCTCCCGAAACAGAACGGTCCTCCGTGCTTGATTCGCTTCCGATT 589
Query 414 TTCAAATTCTCCTCCGTCACTCGCCGATCTAGTTCAACAAACTCCGGCGATTGCGCCGTC 473
|||||||||||||||||||||||||||||||| || | || ||||| |||||||||||
Sbjct 590 TTCAAATTCTCCTCCGTCACTCGCCGATCTAGCTCCATGAATTCCGGAGATTGCGCCGTT 649
Query 474 TGTTTGTCGAAATTCGAACCGGAGGATCAGCTCCGTCTTCTTCCTCTCTGTTGTCACGCT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 TGTTTGTCGAAATTCGAACCGGAGGATCAGCTCCGTCTTCTTCCTCTCTGTTGTCACGCT 709
Query 534 TTTCACGCCGATTGTATCGACATCTGGCTAGTCTCGAACCAGACTTGTCCTCTCTGTCGT 593
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 710 TTTCACGCCGATTGTATCGATATCTGGCTAGTCTCTAACCAGACTTGTCCTCTCTGTCGC 769
Query 594 TCTCCTCTCTTCGCTTCAGAGTCCGATCTAATGAAGTCTCTCGTCG--G-CGGAAACAA- 649
|||||||||||||||||||| || ||||| ||||||||||||| || | ||| |||
Sbjct 770 TCTCCTCTCTTCGCTTCAGAATCTGATCTCATGAAGTCTCTCGCCGTCGTCGGCT-CAAA 828
Query 650 CAACAGCAACGGTGGAGAAAACAGCTTCCGTCTCGAAATCGGATCCATCAGCCGTCGTC- 708
|||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 CAACGGC---GGAGGAGAAAACAGCTTCCGTCTCGAAATCGGATCCATCAGCCGTCGTCG 885
Query 709 --AAACA--GA----A---TCCGTAGAGCAGCACCGATCTTACTCAATCGGTTCGTTCGA 757
||||| || | ||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 886 TCAAACACCGATTCCAGAATCCGTTGAGCAGCATCGAACTTACTCAATCGGTTCGTTCGA 945
Query 758 TTACATAGTAGACGACGTAGATTCAGAAATCTCAGAGTCAAATTTCAACCGTAGAAGCAT 817
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 946 TTACATAGTAGACGACGTAGATTCAGAAATCTCAGAGTCAAATTTCAACCGT-G--G-A- 1000
Query 818 ATCGGCAAAACAGGAAGACGCGACTacaacaacaac-a-a-caacGGCGGTTACGTCTAA 874
| || ||||||||||||||||||||||| | | | |||||||||||||| ||||
Sbjct 1001 A-----AA--CAGGAAGACGCGACTACAACAACTGCCACAGCAACGGCGGTTACGACTAA 1053
Query 875 TCCGGCGTCGTTTGAAGCTAGTTTAGCGGCGGATATAGGTAACGATGGTTCTAGAAGCTG 934
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 TCCGACGTCGTTTGAAGCTAGTTTAGCGGCGGATATAGGTAACGATGGTTCTAGAAGCTG 1113
Query 935 GCTCAAGGATTACGTGGACAGACTCTCACGAGGTATATCGTCGCGTGCAATGTCGTTTAG 994
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 GCTCAAGGATTACGTTGACAGACTCTCACGAGGTATATCGTCGCGTGCAATGTCGTTTAG 1173
Query 995 AAGCTCTGGTAGATTTTTTACCGGGAGTAGCCGTCGGACTGAGGAATTGACGGTGATGGA 1054
||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||
Sbjct 1174 AAGCTCTGGTAGATTTTTTACTGGGAGTAGTCGTCGGAGTGAGGAATTGACGGTGATGGA 1233
Query 1055 TTTAGAAGCCAATCATGCCGGCGAAGAGATAAGTGAGCTTTTCCGGTGGCTTTCAGGGGT 1114
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1234 TTTAGAAGCGAATCATGCCGGAGAAGAGATAAGTGAGCTTTTCCGGTGGCTCTCAGGGGT 1293
Query 1115 GTGAGTGACTGGTGAGTCGGTGAAATTTGTTCATTCGCTTGGaaaaaaaaaCAGAGCATT 1174
||||||||| ||||||| ||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1294 GTGAGTGACAGGTGAGTTGGTGACATTTGTTCATTCACTTGGAAAAAAAAACAGAGCATT 1353
Query 1175 ACTTTTGGTTTGTACATATAAACACTATCTGAAGTTCTTTGCTTCAATTACGGGATTGTT 1234
|||||||||||||||||||||||||||| |||||||||||||||||||||| | ||| ||
Sbjct 1354 ACTTTTGGTTTGTACATATAAACACTATTTGAAGTTCTTTGCTTCAATTACCG-ATTTTT 1412
Query 1235 TTTT-CT------GACGATATAACAGATGAATTCTCTAGTTATATATTA---CTTCTAA- 1283
|||| || |||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1413 TTTTTCTTTTTCTGACGATATAACAGATGAATTCTCTAGTTATATATTATTACTTTTAAA 1472
Query 1284 TGATCTATTTTTTCTT 1299
|| |||||||| ||||
Sbjct 1473 TGGTCTATTTTCTCTT 1488
Score = 185 bits (100), Expect = 8e-46
Identities = 109/113 (96%), Gaps = 1/113 (1%)
Strand=Plus/Plus
Query 1 TTGAAAGCAAAGTGAAAAGCCAATTGATTTGATTTAACTTTTATGGAATTAAATATAGAC 60
||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct 1 TTGAAAGCAAAGTGAAAAGCCAATTGATTTGATATAAC-TTTATAGAATTAAATATAGAC 59
Query 61 AGTTTGAGTTGGTTCAATGACATTTATTTCTCTGCCTCTTTCCCAACGTCCCC 113
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 60 AGTTTGAGTTGGTTCGATGACATTTATTTCTCTGCCTCTTTCCCAACGTCCCC 112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63905293785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5