BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486495
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60250.1 | Symbols: CKB3 | casein kinase II beta chain 3 | ... 1683 0.0
AT2G44680.1 | Symbols: CKB4 | casein kinase II beta subunit 4 ... 841 0.0
> AT3G60250.1 | Symbols: CKB3 | casein kinase II beta chain 3
| chr3:22270337-22272113 REVERSE LENGTH=1359
Length=1359
Score = 1683 bits (911), Expect = 0.0
Identities = 1188/1307 (91%), Gaps = 78/1307 (6%)
Strand=Plus/Plus
Query 2 AAAA-AAGAAAACCCTAGATTTCTCCG--TCTC---TTTCC-TT-TCTCTCAAGCTTCTC 53
|||| |||||||||||||||||||||| |||| ||||| || |||||||||||||||
Sbjct 25 AAAAGAAGAAAACCCTAGATTTCTCCGTCTCTCTAATTTCCTTTCTCTCTCAAGCTTCTC 84
Query 54 AGAAAGTCTGACACTTT-GAGAATCTAATCTCCAAAGTTATTGTC-TTTT-G-G-A-G-- 105
||||||||||||||||| |||||||||||||||||| || ||||| |||| | | | |
Sbjct 85 AGAAAGTCTGACACTTTCGAGAATCTAATCTCCAAATTTCTTGTCTTTTTGGAGAAGGAA 144
Query 106 --GAATTATGTACAAGGAACGTAGTGGAGGA---GGAGGTGGGTCATCGAGATCGGAGAT 160
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 145 TCGAATTATGTACAAGGAACGTAGTGGAGGAGGTGGTGGTGGGTCATCGAGATCAGAGAT 204
Query 161 CCTCGGTGGAGCTATTGATCGGAAACGAATCAACGATGCACTCAATAAGAAACTAGAGAA 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 CCTCGGTGGAGCTATTGATCGGAAACGAATCAACGATGCACTCAATAAGAAACTAGAGAA 264
Query 221 ATCTTCAACTCCCACCACCACATCTAGGGTTTTCTCTTCTAAAGACAAAGATCCCTTTTC 280
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 ATCTTCAACTTCCACCACCACATCTAGGGTTTTCTCTTCTAAAGACAAAGATCCCTTTTC 324
Query 281 ATTCACATCTACTTCCACTGCTAAATCTCAGCTCCCCGATGTGGAATCGGAAACTGATAG 340
||||||||||| | | ||| ||||||| || |||||||||||||||||||||||
Sbjct 325 CTTCACATCTAC-T--A-----AAA-CTCAGCTTCCTGATGTGGAATCGGAAACTGATAG 375
Query 341 TGAAGGGTCAGATGTGAGTGGATCGGAAGGTGATGATACATCGTGGATCTCTTGGTTTTG 400
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 376 TGAAGGGTCTGATGTGAGTGGATCGGAGGGTGATGATACGTCGTGGATCTCTTGGTTTTG 435
Query 401 TAATTTGAGAGGGAATGATTTCTTCTGTGAAGTCGATGAAGACTATATTCAAGATGATTT 460
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 436 TAATTTGAGAGGGAATGATTTCTTCTGTGAAGTCGATGAAGATTATATTCAAGATGATTT 495
Query 461 CAATCTTTGTGGATTAAGTGGTCAAGTTCCTTACTATGAGTATGCTCTTGATCTCATTTT 520
|||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 496 CAATCTTTGTGGTTTAAGTGGTCAAGTCCCTTACTATGATTATGCACTTGATCTCATTTT 555
Query 521 AGATGTGGAAT-CTTCCAACAGTGAGATGTTTACTGAAGAACAGAATGAAATGGTGGAAT 579
|||||| | || ||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 556 AGATGTTG-ATGCTTCCAACAGTGAGATGTTTACTGATGAACAGCATGAAATGGTGGAAT 614
Query 580 CAGCTGCTGAAATGCTATATGGTCTTATTCATGTTCGTTACATTTTGACTACTAAAGGAA 639
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 CAGCTGCTGAGATGCTATATGGTCTTATTCATGTTCGTTACATTTTGACTACTAAAGGAA 674
Query 640 TGGCTGCAATGACTGAGAAGTACAAGAACTGTGATTTCGGGAGATGCCCGAGAGTTTTCT 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 TGGCTGCAATGACTGAGAAGTACAAGAACTGTGATTTCGGGAGATGCCCGAGAGTTTTCT 734
Query 700 GTTGCGGTCAGTCTTGTCTTCCAGTTGGACAATCCGATATCCCGAGATCGAGTACTGTGA 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 GTTGCGGTCAGTCTTGTCTTCCAGTTGGACAATCCGATATCCCGAGATCGAGTACTGTGA 794
Query 760 AGATATACTGCCCAAAATGCGAGGACATATCTTACCCGCGATCTAAATTCCAAGGCAATA 819
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 795 AGATATACTGCCCTAAATGCGAGGATATATCTTACCCGCGATCTAAATTCCAAGGCAATA 854
Query 820 TTGATGGAGCATACTTTGGAACCACATTCCCTCACTTGTTCTTGATGACTTACGGGAACT 879
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 TTGATGGAGCGTACTTTGGAACCACATTCCCTCACTTGTTCTTGATGACTTACGGGAACT 914
Query 880 TAAAGCCGCAGAAACCGACTCAAAACTACGTCCCAAAAATCTTTGGCTTCAAGGTACACA 939
||||||||||||| || ||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 915 TAAAGCCGCAGAAGCCTACTCAAAGCTATGTCCCAAAAATCTTTGGCTTCAAGGTACACA 974
Query 940 AACCATGATACTAGTGCTCTACTTTCTCAATGGTGATACATCTAGTGGCTCGGTAATTGC 999
|||||||||||||||||||| | |||||||||||||||||| ||||||||| ||||||||
Sbjct 975 AACCATGATACTAGTGCTCTGCATTCTCAATGGTGATACATTTAGTGGCTCTGTAATTGC 1034
Query 1000 ATCCGGATGAGCAACAACTGAAACGATAGCTGCGGTTTGAATGGAGCATACATCAATCAT 1059
||||||||||||||| |||||||||||||||||| || ||||||||||||||| |||
Sbjct 1035 ATCCGGATGAGCAAC---TGAAACGATAGCTGCGGT--GACTGGAGCATACATCAACCAT 1089
Query 1060 TGGGTGA-AG--T------TGA--T--A--GATGGAATCCTGAAAGGAGGATCTCATGAA 1104
||||| | || | ||| | | ||||||||| |||||| | ||||||||||
Sbjct 1090 TGGGTTAGAGGATGAGAGCTGAAGTTGAAAGATGGAATCTTGAAAG-A--ATCTCATGAA 1146
Query 1105 GTTCCAAGAAAACTTATAAGTGCAACAGCCTGGCTCATTGGGGGTAAAGAA--------T 1156
|||||||||||||||| ||||||||||||||||||||||||||| |||||| |
Sbjct 1147 GTTCCAAGAAAACTTAGAAGTGCAACAGCCTGGCTCATTGGGGGAAAAGAACGACACACT 1206
Query 1157 -G--TCT---------C-CC-AAAAGATTTTCCCCTGTTAGTTGGATTTTGTTTT-AACT 1201
| ||| | || |||||||||||||| ||||||||||||||||||| ||||
Sbjct 1207 TGGGTCTTGTTGTTGTCTCCGAAAAGATTTTCCCCAGTTAGTTGGATTTTGTTTTGAACT 1266
Query 1202 GTTGAATTATTATTTGTTTTCCTAATTTCATGTAAAACTCATAAATT 1248
|||| ||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1267 GTTGGATTATTATTCGTTTTTCTAATTTCATGTAAAACTCATAAATT 1313
> AT2G44680.1 | Symbols: CKB4 | casein kinase II beta subunit
4 | chr2:18426572-18428357 REVERSE LENGTH=1369
Length=1369
Score = 841 bits (455), Expect = 0.0
Identities = 713/833 (86%), Gaps = 35/833 (4%)
Strand=Plus/Plus
Query 138 GGTGGGTCATCGAGATCGGAGATCCTCGGTGGAGCTATTGATCGGAAACGAATCAACGAT 197
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 231 GGTGGATCATCGAGATCGGAGATCCTTGGTGGAGCTATTGATCGGAAACGAATCAATGAT 290
Query 198 GCACTCA-ATAAGA-AAC-TAGAGAAATCTTCAACTCCCACCACCACATCTAGGGTTTTC 254
|| | | | || | | | || |||||||||| | | | | |||||||||||||||
Sbjct 291 GC-TTTAGACAA-ACATCTTA-AGAAATCTTC-A----C-CTTCTACATCTAGGGTTTTC 341
Query 255 TCTTCTAAAGACAAAGATCCCTTTTCATTC-ACATCTACT--TCCA-CT--GC-TAAATC 307
||||||| ||||||||| || | | ||| || || ||| | | || || | | ||
Sbjct 342 ACTTCTAAGGACAAAGAT-TCTGTCCCTTCTACTTCAACTGCTAAATCTCAGCTTCATTC 400
Query 308 TCAGCT-CCCCGATGTGGAATCGGAAACTGATAGTGAAGGGTCAGATGTGAGTGGATCGG 366
|| | | ||||||||| ||||| || || ||||||||||| |||||||||||||| || |
Sbjct 401 TC-GTTCCCCCGATGTTGAATCTGACACGGATAGTGAAGGATCAGATGTGAGTGGTTCAG 459
Query 367 AAGGTGATGATACATCGTGGATCTCTTGGTTTTGTAATTTGAGAGGGAATGA-TTTCTTC 425
||||||||||||| || |||||||| |||||||||||||||||||||||||| ||| |||
Sbjct 460 AAGGTGATGATACCTCTTGGATCTCATGGTTTTGTAATTTGAGAGGGAATGAGTTT-TTC 518
Query 426 TGTGAAGTCGATGAAGACTATATTCAAGATGATTTCAATCTTTGTGGATTAAGTGGTCAA 485
|||||||| |||||||| ||||| ||||||||||||||||| ||||| || |||||||||
Sbjct 519 TGTGAAGTAGATGAAGATTATATACAAGATGATTTCAATCTCTGTGGTTTGAGTGGTCAA 578
Query 486 GTTCCTTACTATGAGTATGCTCTTGATCTCATTTTAGATGTGGAATCTTCCAACAGTGAG 545
|||||||||||||| ||||| |||||||||||||||||||| ||||| || || ||||
Sbjct 579 GTTCCTTACTATGATTATGCACTTGATCTCATTTTAGATGTTGAATCATCAAATGGTGAT 638
Query 546 ATGTTTACTGAAGAACAGAATGAAATGGTGGAATCAGCTGCTGAAATGCTATATGGTCTT 605
|||||||||||||||||| |||| |||||||||||||||||||| ||| |||||||||||
Sbjct 639 ATGTTTACTGAAGAACAGCATGAGATGGTGGAATCAGCTGCTGAGATGTTATATGGTCTT 698
Query 606 ATTCATGTTCGTTACATTTTGACTACTAAAGGAATGGCTGCAATGACT-GAGAAGTACAA 664
|||||||||||||| ||| | |||||||||||||||||||| |||| | |||||||| ||
Sbjct 699 ATTCATGTTCGTTATATTCTCACTACTAAAGGAATGGCTGCTATGA-TGGAGAAGTATAA 757
Query 665 GAACTGTGATTTCGGGAGATGCCCGAGAGTTTTCTGTTGCGGTCAGTCTTGTCTTCCAGT 724
||| | |||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 758 GAATTATGATTTCGGGAGATGCCCCAGAGTTTTCTGTTGCGGACAGTCTTGTCTTCCGGT 817
Query 725 TGGACAATCCGATATCCCGAGATCGAGTACTGTGAAGATATACTGCCCAAAATGCGAGGA 784
||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 818 TGGCCAATCTGATATCCCGAGGTCGAGCACTGTGAAGATATACTGCCCAAAATGCGAGGA 877
Query 785 CATAT-CTTACCCGCGATCTAAATTCCAAGGCAATATTGATGGAGCATACTTTGGAACCA 843
|| | || ||||||||||||||| ||||||||| ||||||||||| ||||||||||| |
Sbjct 878 TATTTACT-ACCCGCGATCTAAATACCAAGGCAACATTGATGGAGCTTACTTTGGAACTA 936
Query 844 CATTCCCTCACTTGTT-CTTGATGACTTACGGGAACTT-AAAGCCGCAGAAACCGACTCA 901
| |||||||| ||||| || ||| | || |||||| | ||| |||||||| ||| ||||
Sbjct 937 CTTTCCCTCATTTGTTTCTC-ATGGCCTATGGGAACATGAAA-CCGCAGAAGCCGGCTCA 994
Query 902 AAACTACGTCCCAAAAATCTTTGGCTTCAAGGTACACAA-AC-CA-TGATACT 951
||||||||| || || ||||||||||| ||||||||||| | || |||||||
Sbjct 995 AAACTACGTTCCTAAGATCTTTGGCTTTAAGGTACACAACAAACAATGATACT 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61395266535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5