BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486497
Length=1283
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60260.1 | Symbols: | ELMO/CED-12 family protein | chr3:222... 1772 0.0
> AT3G60260.1 | Symbols: | ELMO/CED-12 family protein | chr3:22273853-22277148
FORWARD LENGTH=1329
Length=1329
Score = 1772 bits (959), Expect = 0.0
Identities = 1205/1313 (92%), Gaps = 60/1313 (5%)
Strand=Plus/Plus
Query 1 AAGCTTCTGATAGCGATTGAACAATACGCGCCAGATCCTATAG-T-T-AATCCCCGGCCA 57
|||||| ||||||||| ||||||| |||||||||||||| ||| | | ||| || |||
Sbjct 4 AAGCTTTTGATAGCGACTGAACAACACGCGCCAGATCCTTTAGTTGTAAAT--CC--CCA 59
Query 58 TTTTTGTTTTCTTAAACCCAAAGAGAGAGGaaaaaaaaGAAGAAGAGAAACGGCCG---- 113
||||| |||||||||||||||||| | | | |||||| |||||||||||||||||
Sbjct 60 TTTTTATTTTCTTAAACCCAAAGA-A-A-G--AAAAAA-AAGAAGAGAAACGGCCGAATC 113
Query 114 -------ATTCCGCC-TCTGGTAAGCTCAATCGCCGCATAAACTCCGGCGACTCCCTCGA 165
|||||||| |||| |||||||||||||||| |||||||||||||||| |||||
Sbjct 114 TTCATAAATTCCGCCATCTGTTAAGCTCAATCGCCGCCTAAACTCCGGCGACTCTCTCGA 173
Query 166 AGAGATTTGGTGATTGA-G-G--T--G-A-A-A---AGAGAGTGAGATGGATGATAGAGG 213
||| ||||||||||||| | | | | | | | |||||| |||||||||||||||||
Sbjct 174 AGATATTTGGTGATTGAGGTGACTCGGAAGAGAGTGAGAGAGAGAGATGGATGATAGAGG 233
Query 214 AGGATCGTTCGTAGCAGTGAGAAGGATTTCACAAGGTCTAGAACGAGGAAGTGTTTATCA 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 AGGATCGTTCGTAGCAGTGAGAAGGATTTCACAAGGTCTAGAACGAGGAAGTGTTTATCA 293
Query 274 TTCTTCTTCTGCTGAGGTTGTAGCTGGATCGGCAGCGTGGTTAGGCCGTGGCCTTTCCTG 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TTCTTCTTCTGCTGAGGTTGTAGCTGGATCGGCAGCGTGGTTAGGCCGTGGCCTTTCCTG 353
Query 334 TGTTTGTGTTCAGGGAAGAGACGGTGACCCCCGTCCTTCATTTGATCTAACGCCTGCTCA 393
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 354 TGTTTGTGTTCAGGGTAGAGACGGTGACCCTCGTCCTTCATTTGATCTAACGCCTGCTCA 413
Query 394 GGAGGAATGCCTGCAGAGGTTGCAAAGCCGCATTGATGTTGCCTATGACCGCTCAATATC 453
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
Sbjct 414 GGAGGAATGCCTGCAGAGGTTGCAAAGCCGCATTGATGTTGCTTATGACAGCTCAATACC 473
Query 454 TCAGCATCAGGAAGCTCTGAAGGATCTTTGGAAACTTGCCTTTCCTGAAGAAGAGCTACA 513
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 474 TCAGCATCAGGAAGCTCTAAAGGATCTTTGGAAACTTGCATTTCCTGAAGAAGAGCTACA 533
Query 514 CGGAATTGTATCTGAGCAGTGGAAGGAAATGGGTTGGCAAGGAAAAGATCCTTCAACAGA 573
||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 534 CGGAATTGTATCTGATCAGTGGAAGGAAATGGGTTGGCAGGGAAAAGATCCATCGACAGA 593
Query 574 TTTTAGGGGTGGTGGTTTTATTTCACTTGAAAACTTGTTGTACTTTGCTAG-ACAATTCC 632
|||||||||||||||||||||||| || ||||||||||||||||| ||||| | ||||||
Sbjct 594 TTTTAGGGGTGGTGGTTTTATTTCTCTCGAAAACTTGTTGTACTTCGCTAGGA-AATTCC 652
Query 633 CGAAATCCTTCCAAGACCTTCTGCGGAAACAGGTTGGGGATCGTTCAGTGTGGGAATACC 692
||||||| ||||| | ||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 653 CGAAATCTTTCCACGGCCTTCTGCGGAAACAGGTTGGCGATCGTTCTGTGTGGGAATACC 712
Query 693 CCTTTGCTGTTGCTGGCATCAATATAACATTCATGCTCATCCAGATGCTTGACCTTGAAG 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 CCTTTGCTGTTGCTGGCATCAATATAACATTCATGCTCATCCAGATGCTTGACCTTGAAG 772
Query 753 CAGTGAAACCACGAAGTATTGTTGGGGAAACATTTCTGAGATTCCTTTCGGTGAATGAAT 812
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 773 CAGTGAAACCACGAAGTATTGTTGGGGAAACATTTCTAAGATTCCTTTCGGTGAACGAGT 832
Query 813 CTGCGTTTGACCTTCTTTATTGCATTGCCTTCAAGCTAATGGATCAGCAATGGCTCTCCA 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 833 CTGCGTTTGACCTTCTTTATTGCATTGCCTTCAAGCTAATGGATCAGCAATGGCTATCCA 892
Query 873 TGCATGCTTCATACATGGAGTTTAATACTGTAATGAAATCGACAAGGCGGCAACTGGAGA 932
||| ||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 893 TGCGTGCTTCATACATGGAGTTTAACACTGTGATGAAATCAACAAGGCGGCAACTGGAGA 952
Query 933 GAGAGATTATGGTTGAAGACATTACAAGTCTCGAAGATTTGCCATCATACAGTCTTCTCA 992
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 GAGAGATTATGATTGAAGACATTACAAGTCTCGAAGATTTGCCATCATACAGTCTTCTCA 1012
Query 993 GTCAATAGCAAATAGCTTACCAAAGACTCCTTTGTAAGTAGAAAGATCTAACACCTCAAA 1052
|||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||| |
Sbjct 1013 GTCAATAGCAAATAGCTTACCAAAAACTACTTTGTAAGTAGAAAGATCTAACAGCTCAGA 1072
Query 1053 AACCCTTATATCAAAGCTAAAACAACAACAGAGC---TA-GCAAGCAAAAAAGAAGACAA 1108
|||||| |||||||||||||||||||| |||||| || ||||||||||||||||||||
Sbjct 1073 AACCCT-ATATCAAAGCTAAAACAACAGCAGAGCAAGTAAGCAAGCAAAAAAGAAGACAA 1131
Query 1109 GGTTTCCctctctctctctctcGCTCTTCACTCCATCTTCCTCTATATTAGTGTTGGTTC 1168
|||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1132 GGTTTC--TCTCTCTCTC----GCTCTTCACTCCATCTTCCTCGATATTAGTGTTGGTTC 1185
Query 1169 -ATGAAATTTGGGACACTGGGTTGTTATTTCTATGAAACCAGGTTCAGATTTTGTTTCCT 1227
|||||||||||| | | |||||||||||||||||||| |||||||||||||| |
Sbjct 1186 CATGAAATTTGGG----T---T-GTTATTTCTATGAAACCAGGGTCAGATTTTGTTTCTT 1237
Query 1228 ATGGGGTCAGTTTTTTCTAACTTGTGGTGCTTGTAAAACGTTGTTGGCTAGTT 1280
|||||||||| |||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1238 ATGGGGTCAGATTTT-CTAACTTGTGGTGCTTGTAAAACGTTGTTGGTTAGTT 1289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63102085065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5