BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486501
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60280.1 | Symbols: UCC3 | uclacyanin 3 | chr3:22279664-2228... 597 5e-170
AT3G60270.1 | Symbols: | Cupredoxin superfamily protein | chr3... 335 4e-91
> AT3G60280.1 | Symbols: UCC3 | uclacyanin 3 | chr3:22279664-22280675
REVERSE LENGTH=914
Length=914
Score = 597 bits (323), Expect = 5e-170
Identities = 418/463 (90%), Gaps = 9/463 (2%)
Strand=Plus/Plus
Query 1 CTCTCTCTGTCTCTTCATCTATCTTCTG-ACATTATATAACTCAATGGGATCAACCGTGG 59
||||||||||||||| |||||||||| | ||||||||| | | |||||||||||||||||
Sbjct 3 CTCTCTCTGTCTCTTTATCTATCTTC-GTACATTATAT-A-T-AATGGGATCAACCGTGG 58
Query 60 CGGCCGCTCTCCTCCTCTTCCTAGCGGCAGTCCCTGCCGTCTTTGCCGTGACTTTCAAGG 119
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 59 CCGCCGCTCTCCTCCTCTTCCTAGCGGCAGTCCCTGCCGTCTTTGCCGCAACTTTCAAGG 118
Query 120 TCGGCGATAATGCTGGCTGGACTAGTGGTATTGATTACACCGATTGGGTCACTGGAAAGA 179
||||||||| | |||||||||| ||| | |||||||||| | |||| ||||||||||||
Sbjct 119 TCGGCGATATTTCTGGCTGGACCAGTAATCTTGATTACACGGTTTGGCTCACTGGAAAGA 178
Query 180 CTTTCAGAGTCGGTGACACCCTAGAGTTCATATATGATCTTTCACACTCGGTGTCCGTGG 239
||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||
Sbjct 179 CTTTCAGAGTCGGTGACACTCTAGAGTTCGTATATGGTCTTTCACACTCGGTGTCCGTGG 238
Query 240 TGGATAAAGCCGGCTATGATGGCTGCGACAGTAGCGGAGCGACACAGAATTTCTTC-GAT 298
|||||||||| ||||| ||| |||||||||||||||||| |||||||| || | | |||
Sbjct 239 TGGATAAAGCTGGCTACGATAACTGCGACAGTAGCGGAGCCACACAGAACTT-TGCCGAT 297
Query 299 GGAGACACTAAGATCGATCTTACAACAGTTGGAACAATGCACTTCCTTTGCCCTACTTTT 358
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 298 GGAGACACTAAGATCGATCTTACCACAGTTGGAACAATGCACTTCCTTTGCCCTACTTTT 357
Query 359 GGTCACTGCCTTGAT-GGCATGAAACTCGCCGTTCCCGTCCTTGCCGCCGCTCCATCTCC 417
||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 358 GGTCACTGCAA-GAACGGCATGAAACTCGCCGTTCCTGTCCTCGCCGCCGCTCCATCTCC 416
Query 418 GTCTACTCCTTCTTCGCCCCCCTCCCCACCTTCGCCTCCCTCT 460
|| |||||||||||||| |||||| | |||||| |||| |||
Sbjct 417 TTCGACTCCTTCTTCGCCTCCCTCCACTCCTTCGACTCCTTCT 459
Score = 368 bits (199), Expect = 4e-101
Identities = 282/321 (88%), Gaps = 10/321 (3%)
Strand=Plus/Plus
Query 425 CCTTCTTCGCCCCCCTCCCCA-C-CT-TCGCCTCCCTCTCCGCCTCCATCTGCATCCCCG 481
||| ||||||| || || ||| | || | ||| ||||| ||||||||||||||| |||
Sbjct 502 CCTCCTTCGCCTCCTTCTCCATCGCTCCCCCCTAGCTCTCTGCCTCCATCTGCATCTCCG 561
Query 482 CCAACCAATGGCACGCCGGATTCAGACACATTGACGCCTCCACCGA-CTCCATTGACACC 540
|| ||||||||||||||||||||||| |||||||||||||| || | |||||||| | ||
Sbjct 562 CCGACCAATGGCACGCCGGATTCAGAGACATTGACGCCTCCGCC-AGCTCCATTGCCGCC 620
Query 541 TT--C-GTCTCCAAACGCAGCGTCTACGGTAGTCATGAGCTATGGAATAATTGGAGTCAC 597
|| | |||||||||||| || |||| || ||||||||||||||||||||||||||||||
Sbjct 621 TTCGCTGTCTCCAAACGCGGCATCTAAGGGAGTCATGAGCTATGGAATAATTGGAGTCAC 680
Query 598 GATGATATTGATGTACGGTGTTATGACATAAATTACAGGGTGGAAACAGAGCAttttttt 657
||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||| ||||
Sbjct 681 GATGATATTGATGTACGCTGTTATGACCTAAATAACAGGGTGGAAACAGAGCATTGTTTT 740
Query 658 tGCTCGATGTCTTTTTTGGTCGGCGGTCTTTGGAACTACTTCACCACTACGTGCTCTTTA 717
|||| |||||||||||||||||||| |||||||| |||| ||||||||||||||||||
Sbjct 741 -GCTCCATGTCTTTTTTGGTCGGCGGCCTTTGGAAATACTACACCACTACGTGCTCTTTT 799
Query 718 GTGTGTAACGAAATCtttttt 738
|||||||||| ||| ||||||
Sbjct 800 GTGTGTAACGGAAT-TTTTTT 819
> AT3G60270.1 | Symbols: | Cupredoxin superfamily protein | chr3:22278029-22278762
REVERSE LENGTH=564
Length=564
Score = 335 bits (181), Expect = 4e-91
Identities = 291/344 (85%), Gaps = 8/344 (2%)
Strand=Plus/Plus
Query 68 CTCCTCCTCTTCCTAGCGGCAGTCCCTGCCGTCTTTGCCGTGACTTTCAAGGTCGGCGAT 127
||||||||| |||||| ||||||||||||||||||||||||||||||| |||| || |||
Sbjct 31 CTCCTCCTCCTCCTAGTGGCAGTCCCTGCCGTCTTTGCCGTGACTTTCCAGGTGGGAGAT 90
Query 128 AATGCTGGCTGGACTAGTGGTATTGATTACACCGA-TTGGGTCACTGGAAAGACTTTCAG 186
|||| ||| ||||| | |||| | || ||||| || |||||| | || ||||||||||||
Sbjct 91 AATGATGGTTGGACCATTGGTGTCGAGTACAC-GAGTTGGGTTAGTGAAAAGACTTTCAG 149
Query 187 AGTCGGTGACACCCTAGAGTTCATATATGATCTTTCACACTCGGTGTCCGTGGTGGATAA 246
|||||||||||| |||||||||| ||||| || ||| ||||||||| |||||||| ||||
Sbjct 150 AGTCGGTGACACTCTAGAGTTCAAATATGGTCCTTCGCACTCGGTGGCCGTGGTGAATAA 209
Query 247 AGCCGGCTATGATGGCTGCGACAGTAGCGGAGCGACACAGAATTTCTTC-GATGGAGACA 305
||||| ||||||||||||||| | |||| || |||| |||| ||| ||| || |||||||
Sbjct 210 AGCCGACTATGATGGCTGCGAAACTAGCAGACCGACGCAGAGTTT-TTCTGACGGAGACA 268
Query 306 CTAAGATCGATCTTACAACAGTTGGAACAATGCACTTCCTTTGCCCTACTTTTGGTCACT 365
|||||||||||||||||| ||| || | || ||||||||||||| |||| ||||||||
Sbjct 269 CTAAGATCGATCTTACAAAAGTAGGTGCTATACACTTCCTTTGCCTTACTCCTGGTCACT 328
Query 366 GC--CTTGATGGCATGAAACTCGCCGTTCCCGTCCTTGCCGCCG 407
|| | | |||||||||||||||||| | || ||||| ||||
Sbjct 329 GCAGCCT--TGGCATGAAACTCGCCGTACAAGTACTTGCTGCCG 370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37926780985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5