BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486503
Length=2541
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60310.1 | Symbols: | unknown protein; Has 22 Blast hits to... 3360 0.0
AT1G10290.1 | Symbols: ADL6, DRP2A | dynamin-like protein 6 | c... 82.4 2e-14
> AT3G60310.1 | Symbols: | unknown protein; Has 22 Blast hits
to 18 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:22287682-22291308 FORWARD
LENGTH=2629
Length=2629
Score = 3360 bits (1819), Expect = 0.0
Identities = 2135/2288 (93%), Gaps = 20/2288 (1%)
Strand=Plus/Plus
Query 32 CCG-GTTTCTACATCGCCGGCGATTGAGTCTGCTCGGCTGTTCGATGTCCTCTCCGTCTG 90
||| || |||||||||||||||||||| ||||||| || ||||||| ||||||||||||
Sbjct 56 CCGAGTATCTACATCGCCGGCGATTGATTCTGCTCATCTTTTCGATGCCCTCTCCGTCTG 115
Query 91 CAGTCGCCGATCTCTTGGCCGCGCTTGCTTACAGGCTTCAGAACGGAGATCAATTATTC- 149
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 116 CAGTCGCCGATCTCTTGGCCGCTCTTGCTTACAGGCTTCAGAACGGAGATGAATTATTCG 175
Query 150 -----GAAGAAGAAGTGGAAGAGTCTACTTCCTCTATGGGACTAGCTATCTCGGAGCTTA 204
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 176 AAGAAGAAGAAGAAGCGGAAGAGTCTACTTCTTCTATGGGACTAGCTATCTCGGAGCTTA 235
Query 205 ACCGATCTCTGACTCTGGACATCGGCGGCGAGGATTCTGGGGTCAGGGTTCTGGACGCAT 264
||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||
Sbjct 236 ACCGATCTCTGACTCTGGATATCGGCTGCGAGGATTCTGGGGTCAGGGTTGTGGACGCAG 295
Query 265 CCTTATCTCTAATGTGCTTCAAGGCACCTCAGGTTTTTGATTCGGCGATTGAGTATATGG 324
| |||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 296 CGTTATCTATAATGTGCTTCAAGGCACCTCAGGTTTTTGATTCGGCAATTGAGTTTATGG 355
Query 325 TGCGAACACTTGTTTGTGCCTTATCATCTTCAAGCAATTTTAAGGTACTTAAGTATCGAA 384
| |||||| ||||||| |||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct 356 TACGAACAATTGTTTGCGCCTTATCATCTTCAAGCAATTGTAAGGTAATTAGGTATCGAA 415
Query 385 ACGAGGAAACATTACAGTTTGGGAGCTCCAATTTACCTCAG-TGCTCTGAAGAATTGATC 443
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 416 ACGAGGAAACATTACAGTTTGGGAGCTCCAATTTACCT-GGCTGCTCTGAAGAATTGATC 474
Query 444 GAAATCTCTAAGGATATTATTGATAAACTG-GGGGCAAATGGAAGATTGGCTACATTGTT 502
||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||
Sbjct 475 GAAATCTCTAAGGATATTATTGAGAAACTGTGGGG-AAATGGAAGATTGGCTACATTGTT 533
Query 503 ATTCCAAGCTGTTGTGAGATCAGCAGCTTCAACATGTAAGATCAACAGCTTCAATGCTCA 562
|||| |||||||||| || |||||||| |||||||||||||||| ||| ||||| || ||
Sbjct 534 ATTCGAAGCTGTTGTAAGGTCAGCAGCCTCAACATGTAAGATCAGCAGTTTCAACGCGCA 593
Query 563 TACAAAGCTTATGGATGGAAGAAATAGGGCTGTTTCGAAGCTTCTTGTTTACTTACCGAG 622
| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
Sbjct 594 TGGAAAGCTTATGGATGGAAGAAATAGGGCTGTCTCGAAGCTTCTTGCTTACTTACCGGG 653
Query 623 AGAATCATCTGTAGAGAGCCACGAGATACCTCTGAGGATTCTGTTCTGGTATCAAGATCC 682
|||||||||| |||||| |||| ||||||||||||||||||| |||||||||| ||||||
Sbjct 654 AGAATCATCTATAGAGAACCACAAGATACCTCTGAGGATTCTTTTCTGGTATCGAGATCC 713
Query 683 ATTGTCTTTGAAGGAAGATGTTTCCAGAATCTTGAAAGATGTTGTGGAAAGGCCTTTCCT 742
|||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||
Sbjct 714 ATTGTCTTTGAAGGTAGATGTTTCCAGAATCTTGAAAGAGGTGGTGGAAAGGCCTTTCCT 773
Query 743 TTCTATAAAAAAGGAGCTTTTCGAGAGGGCAGAGTGGCGCGATATTGTCATCTGCTTAGC 802
|| | |||||| ||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 774 TTGTGTAAAAAGGGAGCTTTTCGAGAGGGGGGAGTGGCGCGATATTGTCATCTGCCTAGC 833
Query 803 -ACTATCTCCTACTATGTTTATCAACACTAGAGCCCTCTTACATAAATGGCTTTTGCTTA 861
| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 834 GA-TATCTCCTACTATGTTTATCAACACTAGATCACTCTTACATAAATGGCTTTTGCTTA 892
Query 862 CGGGACTTGCTTCTGTTTTTGAAGTACTTGCTGGTTTGGTCTCTGCAATAATGGATACAA 921
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 893 CGGGACTTGCTTCTGTTTTTGAAGTACTTGCTGGTTTGGCCTCTGCAATAATGGATACAA 952
Query 922 TTTCAAAACCATCGTTGTGGGGTATACCAATGGAACTAGCTTCCAGGTTACCATTTTCTG 981
|||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 953 TTTCAAGGCCATCGTTGTGGGGTATACCAATGGAACTAGCTTCCATGTTGCCATTTTCTG 1012
Query 982 ATACATACTTTCCTTCCCAGTGTCAATTTCTGAGAATCTTGGCTGGTCCTCTCAGTTTCA 1041
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1013 ATACATACTTTCCTTTCCAGTGTCAATTTCTGAGAATCTTGGCGGGTCCTCTCAGTTCCA 1072
Query 1042 AGTCCCTCCTAATGTTAGCTCATACTGTCAGTAAAGCATCTGCTGTCCCTAGGCAACAAC 1101
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1073 AGTCCCTCCTAATGTTAGCTCATACTGTCAGTAAAGCGTCTGCTGTCCCTGGGCAACAAC 1132
Query 1102 AACGGGATACTAATTGTAAGCCCACTCCAATAAAAGTTCAAGCATTAGATGACAAAACCG 1161
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1133 AACGGGATACTAATTGTAAGCCTACTCCAATAAAAGTTCAAGCATTAGATGACAAAACCG 1192
Query 1162 AATGGGCTTTGGCTATTAACTTCCCAGATTGGTTCTATTTTGCTTCTGCTATGCTCTTCT 1221
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1193 AATGGGCTTTGGCTATTAACTTCCCAGATTGGTTCTATTTTGCATCTGCTATGCTCTTCT 1252
Query 1222 CAGAAGGAAATTCGTTTGAAAATATCCAACATAGATGCACTTCAAAAGTGGCTGATTGTA 1281
|||||||||| ||||||||||||||||| |||| |||| |||||||||||||||| ||||
Sbjct 1253 CAGAAGGAAAGTCGTTTGAAAATATCCACCATATATGCGCTTCAAAAGTGGCTGACTGTA 1312
Query 1282 GACAAGCATGTGATGTAGAAGATCTCTCCATCGCTGCGGCTACATACATTGCTTGGATTC 1341
|||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1313 GACAAGTATGTGATGTAGAAGATCTCTCCATTGCTGCGGCTACATACATTTCTTGGATTC 1372
Query 1342 TAAACCCTGGAAGTGGAACCATTCAAGTA-TCAGTAAGTAAGTCTCTCATTAGAGTCTCA 1400
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1373 TAAACCCTGGAAGTGGAACCATTCAAG-AGTCAGTAAGTAAGTCTCTCATTAGAGTCTCA 1431
Query 1401 GAGATATGTATCGGCAACAGTTGCGGTTCAGAAGCACATCGTACTGAGACTATAACTGGC 1460
|||||||||||| | || |||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1432 GAGATATGTATCAGTAAAAGTTGCGGCTCAGAAGCATATCGTACTGAGACTATAACTGGC 1491
Query 1461 AAGAGAAAGAAACCAGATAGGCTCGTTTCTGGCAAAATAAA-GTCTTCTAGTATTGTGGA 1519
||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct 1492 AAGAGAAAGAAACCAGATAGGCTCGTTTCTGGCAAAATAAATG-CTTCCAGTATTGTGGA 1550
Query 1520 AGACATATTGAGAGATTTTGAAAACAAAATCACCAATTCAGTTTCTTATGAATTGGATTC 1579
|||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1551 AGACCTATTGAGAGAATTTGAAAACAATATCACCAATTCAGTTTCTTATGATTTGGATTC 1610
Query 1580 TCGGAAAACACATCCATCTTTCAGCTGTGGCCTCCAAAACAATTTTTTAGTAAGAAAAGT 1639
||||||||| |||||||||||||||| |||||||||||||||||| || ||||||| |||
Sbjct 1611 TCGGAAAACGCATCCATCTTTCAGCTCTGGCCTCCAAAACAATTTGTTGGTAAGAAGAGT 1670
Query 1640 CGTGGTTGGCATACTTTTTGGTTCGCCATATTCAGTAACAGATGAGGAGTATGAACTGGT 1699
||||||||| | || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1671 TGTGGTTGGCGTTCTGTTTGGTTCTCCATATTCAGTAACAGATGAGGAGTATGAACTGGT 1730
Query 1700 ACTGCACTATGCTGCAACTGGGAAAATTCTTGCCTTTAAGAAATCAAGGAGTACCGGATT 1759
| | |||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1731 ATTACACTATGCAGCAACTGGGAAAATTCTTGACTTTAAGAAATCACGGAGTACCGGATT 1790
Query 1760 CAAACAAGGAAAGGGATTCTCTGGAATATCTGCTTTACTGCCGAATGAAATCACCAAGGA 1819
||||||||||||| ||||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct 1791 CAAACAAGGAAAGAAATTCTCTAGAATATCTGCTTTACTGTCGAATGAAATTACCAAGGA 1850
Query 1820 GGAGGCTATTGAAGGCACACTTCTTGTTTTCAACTTAACTGACACTTTGGAGAGTATGTG 1879
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GGAGGCTACAGAAGGCACACTTCTTGTTTTCAACTTAACTGACACTTTGGAGAGTATGTG 1910
Query 1880 TGTATCAAGTTTTGAAGCTGGAGAGGACGCCGAGAAGTTTATTAACCATTTTAAGCTAAG 1939
||||||||||||||| || ||||||||| |||||||||||||||||||||||||| ||
Sbjct 1911 TGTATCAAGTTTTGAGGCCAAAGAGGACGCAGAGAAGTTTATTAACCATTTTAAGCTGAG 1970
Query 1940 ATCCAGCAAATACTTGGTCAAATGTATAGATCGCCTGATACAACTTCACTGTACAGAAGA 1999
||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1971 ATCCAGCAAGTACTTGGTCAAATGCATAGATCGCCTGATACAACTTCACTGTACACAAGA 2030
Query 2000 TGGAGATCCAATACTAAGTGACATTAATATCAGACTGCTACAATGGACAATAAAAGGACT 2059
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 2031 TGGAGATCCAATACTAAGTGACATTAATATCAGACTGCTGCAATGGACAGTAAAAGGACT 2090
Query 2060 AGAAGATCCACATTTCAACAAAGTTCTTGATAATATCGCTGCTAAGTTGGACTGCAAATT 2119
||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||| |||
Sbjct 2091 AGAAGATCCACATTTTAACAAAGTTCTTGATGATATCGCTGCTAAGTTGGCCTGCATATT 2150
Query 2120 CTCGCCCGTGTAACTGTCACCATATAGCTTGACTTGTGTCATATTTGGTGGTACACATAA 2179
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 2151 CTCGCGCGTGTAACTGTCACCATATAGCCTGACTTGTGTCATATTTGGTGGTACAC-TAA 2209
Query 2180 TTTATGGGAAAATGGTGATCAAATTTGGACAT-TTCAAAGCTCTCAAACGACTGGTATGA 2238
||| |||||||||||||||||||| || || | |||||||| ||| |||||||||||||
Sbjct 2210 TTTTTGGGAAAATGGTGATCAAATGTGAAC-TGTTCAAAGCACTCGCACGACTGGTATGA 2268
Query 2239 AGATATAAATGATGTACAGCTCCACAACTGAAATTATTTGATCTGCCTGGACTGGACCAG 2298
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2269 GGATATAACTGGTGTACAGCTCCACAACTGAAATTATTTGATCTGCCTGGACTGGACCAG 2328
Query 2299 AGAATTGT 2306
||||||||
Sbjct 2329 AGAATTGT 2336
Score = 200 bits (108), Expect = 5e-50
Identities = 152/171 (89%), Gaps = 11/171 (6%)
Strand=Plus/Plus
Query 2307 ATGGTGAGCCTTGGAATCACTTGATGCTTTTGCCATGCTCTCTTAATTCCACTTGACAAC 2366
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||
Sbjct 2382 ATGGTGAGCCTTGGAACCACTTGATGCCTTTGCCATGCTCTCTTAATTCCACTTGATAAC 2441
Query 2367 TACAAAACAAT-ACGCTGGATTTCCTGCTGAAACGGGTCATGTGAGTTTCGTCATCCCAA 2425
|||||||||| || | |||||||||||||||| ||| ||| ||||||||||||||||||
Sbjct 2442 CACAAAACAATAAC-C-GGATTTCCTGCTGAAAAGGGGCATCTGAGTTTCGTCATCCCAA 2499
Query 2426 GCCCCTGAGGCCCTGAGAGTTGCAAAAGGAGTTTGATCCAGAGAAGTGAGT 2476
||||||||| || ||||||||||||| ||||||||||||||||||
Sbjct 2500 GCCCCTGAG------AG--TTGCAAAAGGAGTATGATCCAGAGAAGTGAGT 2542
> AT1G10290.1 | Symbols: ADL6, DRP2A | dynamin-like protein 6 |
chr1:3370558-3377463 FORWARD LENGTH=3304
Length=3304
Score = 82.4 bits (44), Expect = 2e-14
Identities = 50/53 (94%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 2254 ACAGCTCCACAACTGAAATTATTTGATCTGCCTGGACTGGACCAGAGAATTGT 2306
|||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 619 ACAGCTCCACCATTGAAATTAGTTGATCTGCCTGGACTGGACCAGAGAATTGT 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126119694702
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5