BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486504
Length=2691
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60320.1 | Symbols: | Protein of unknown function (DUF630 a... 4191 0.0
> AT3G60320.1 | Symbols: | Protein of unknown function (DUF630
and DUF632) | chr3:22291886-22295371 REVERSE LENGTH=2721
Length=2721
Score = 4191 bits (2269), Expect = 0.0
Identities = 2567/2710 (95%), Gaps = 24/2710 (1%)
Strand=Plus/Plus
Query 1 AGTATAGTGTAGTGGGAAACTCTGGTAACAGC--TATCTAACTTTTTCCTTTTTCTCTAT 58
||||||||||||||||||| ||||| |||||| ||||||||||||||| ||||||||||
Sbjct 1 AGTATAGTGTAGTGGGAAAGTCTGGAAACAGCTGTATCTAACTTTTTCCCTTTTCTCTAT 60
Query 59 GATTCTGTTATGAATAATGCAGAGTCACCGTGAGCTCAGGCGCCACCGTAACGAAGAAGA 118
||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |
Sbjct 61 GATTCTGTTGTGAATAATGCAGAGCCGCCGTGAGCTCAGGCGCCACCGTAACGAAGAACA 120
Query 119 AACCTGAAGTAG---AAGAAGCCATGGGATGTGCAGCGTCGAAGCTCGATAACGAAGATG 175
||||||||| || || |||||||||||||||| ||||| |||||||||||||||||||
Sbjct 121 AACCTGAAGGAGAAAAATAAGCCATGGGATGTGCGGCGTCCAAGCTCGATAACGAAGATG 180
Query 176 CTGTACGGCGGTGTAAGGATCGCCGCCGTCTGATGAAAGAAGCTGTCTATGCTCGCCATC 235
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 181 CTGTACGGCGTTGTAAGGATCGCCGCCGTCTGATGAAAGAAGCTGTCTACGCTCGTCATC 240
Query 236 ATCTCGCCGCCGCTCACGCCGATTACTGCCGATCGCTTCGTCTCACTGGATCTGCTCTTT 295
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 ATCTCGCCGCCGCTCACGCCGATTACTGCCGATCGCTTCGTATCACTGGATCTGCTCTTT 300
Query 296 CCTCATTCGCCTCCGGTGAGCCTCTCTCTGTATCGGATCAAACTCCGGCAGTTTtcctcc 355
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 301 CCTCATTCGCCTCCGGTGAGCCTCTCTCTGTATCTGATCAAACTCCGGCTGTTTTCCTCC 360
Query 356 atcctcctcctcctccGCTTTCTGAACAATCGCCGGCTCAATTTATCCCTCCACGTTTTC 415
|| |||| ||||||||||||||||||||||| |||||| ||||| ||||||||||||||
Sbjct 361 ATACTCCCCCTCCTCCGCTTTCTGAACAATCTCCGGCTAAATTTGTCCCTCCACGTTTTT 420
Query 416 CGCCGTCGCCTGCTCCTTCTTCTGTTTATCCTCCTTCGACGTCTCCTTCCGTCGCTAGTT 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 CGCCGTCGCCTGCTCCTTCTTCTGTTTATCCTCCTTCGACGTCTCCTTCCGTCGCCAGTT 480
Query 476 CT-A--A------AGTCATGTCCACCTCTTCCAATCGACGCCGGAAACAGCAACCAAAAC 526
|| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTAAGCAGCCTTCAGTCATGTCCACCTCTTCCAATCGACGCCGGAAACAGCAACCAAAAC 540
Query 527 CTAAACTGCCTCATATTCTCTCGGAGTCAAGTCCTTCGTCTTCTCCGAGGAGTGAGAGAT 586
||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 541 CTAGACTGCCTCATATTCTCTCGGAGTCAAGTCCTTCTTCTTCTCCGAGAAGTGAGAGAT 600
Query 587 CCAATTTCATGCCGAATTTTTATCCCGGTGCTTATCAGAACTCTACTTACTCCGCTACTC 646
||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 601 CCAATTTCATGCCCAATTTGTATCCCAGTGCTTATCAGAACTCTACTTACTCCGCTACTC 660
Query 647 CTTCCCATGCCTCCTCCGTCTGGAACTGGGAAAATTTCTACCCTCCTTCTCCTCCCGATT 706
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 661 CTTCTCATGCCTCCTCCGTCTGGAACTGGGAGAATTTCTACCCTCCTTCTCCTCCCGATT 720
Query 707 CCGAATTCTTCAACAGGAAGGCTCAAGAGAAGAAACAAAACTCCGATAATCGCTTCAACG 766
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 721 CCGAATTCTTCAACAGGAAGGCTCAAGAGAAGAAACATAACTCCGATAATCGATTCAACG 780
Query 767 ATGAGGATACGGAAACAGAGAGGTCAGAGTATGATTTCTTCGACACAAGGAAGCAAAAGA 826
| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 ACGAGGATACGGAAACAGTGAGGTCAGAGTATGATTTCTTCGACACGAGGAAGCAAAAGC 840
Query 827 AGAAGCAGTTCGAATCAATGAGCAATGC-GGTggaggaggagacggagacggagagagag 885
|||||||||||||||||||||| ||| | ||||||||| |||||||||||||||||||||
Sbjct 841 AGAAGCAGTTCGAATCAATGAGAAAT-CAGGTGGAGGAAGAGACGGAGACGGAGAGAGAG 899
Query 886 gaAGTACAGTGTAGCGAATGGGAGGATCACGATCATTACAGCACGACGAGTTCCTCGGAC 945
|||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 900 GAAGTACAGTGTAGTGAATGGGAGGATCACGATCATTACAGCACCACGAGCTCCTCGGAC 959
Query 946 GCTGCGGAGGAAGAGGAAGAAGATGATGATGATAGAGAGTCAGTTTCCGAGATCGGGACA 1005
|| |||||||||||||||| | | |||||||||||||| ||| |||||||| ||||||||
Sbjct 960 GCAGCGGAGGAAGAGGAAG-A-A-GATGATGATAGAGAATCAATTTCCGAGGTCGGGACA 1016
Query 1006 CGCTCCGAGTTTGGATCTACGGTGAGAAGTAACTCGATGAGACGGCATCATCAACAATCT 1065
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1017 CGCTCCGAGTTTGGATCTACGGTGAGAAGTAATTCGATGAGACGGCATCATCAACAACCT 1076
Query 1066 TCACCAATGCCGCAAGTATACGGCAGCGCTGAACAAGGTAAATATGACAAAGTAGATGAT 1125
|||||||||||||||||||||||| ||||||||||| |||||||||| |||| |||||||
Sbjct 1077 TCACCAATGCCGCAAGTATACGGCGGCGCTGAACAAAGTAAATATGATAAAGCAGATGAT 1136
Query 1126 GCGACGATATCTTCTGGTAGCTATAGAGGCGGAGGAGAGATCGCTGACATGAAGATGGTG 1185
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1137 GCTACGATATCTTCTGGTAGCTATAGAGGCGGAGGAGATATCGCTGACATGAAGATGGTA 1196
Query 1186 GTTAGGCATAGGGATTTGAAAGAAATCGTTGATGCGATTAAGGAGAATTTCGATAAGGCG 1245
||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||
Sbjct 1197 GTTAGGCATAGGGATTTGAAAGAAATCATCGATGCCATTAAGGAAAATTTCGATAAGGCT 1256
Query 1246 GCCGCCTC-GGGCGAGCAAGTCTCTCAGATGCTCGAGCTTGGCAGAGCTGAGCTCGATCG 1304
|| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GCTGCCTCAGGG-GAGCAAGTCTCTCAGATGCTCGAGCTTGGCAGAGCTGAGCTCGATCG 1315
Query 1305 CAGTTTCAGCCAGTTGAAGAAAACGGTGATACATTCGAGTAGCATATTGAGCAACCTGAG 1364
||||||||||| ||||||||||||||||| ||||||||||| |||| |||||| ||||
Sbjct 1316 TAGTTTCAGCCAATTGAAGAAAACGGTGATTCATTCGAGTAGTTTATTAAGCAACTTGAG 1375
Query 1365 CTCTACATGGACCTCGAAGCCGCCATTGGCAGTCAAGTACAGGCTGGACACGACTGCGCT 1424
||| ||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 1376 CTCGACATGGACCTCGAAGCCGCCATTGGCAGTCAAGTATAGGATAGACACGACTGCGCT 1435
Query 1425 GGATCAACCGAACAGTTCGAAGAGCCTTTGTTCCACTCTTGACCGTCTCTTGGCATGGGA 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 GGATCAACCGAACAGTTCGAAGAGCCTTTGTTCCACTCTTGACCGTCTCTTGGCATGGGA 1495
Query 1485 GAAAAAGCTTTATGAAGAAATTAAGGCTAGAGAAGGCTTGAAGATTGAGCATGAGAAGAA 1544
||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1496 GAAGAAGCTTTATGAAGAAATTAAGGCTAGAGAAGGTTTCAAGATTGAGCATGAGAAGAA 1555
Query 1545 GTTATCACAGCTTCAAAGCCAAGAATATAAAGGGGAGGATGAAGCTAAGTTAGACAAGAC 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 GTTATCACAGCTTCAAAGCCAAGAATATAAAGGGGAGGATGAAGCTAAGTTAGACAAGAC 1615
Query 1605 AAAGGCCTCTATAACGAGGTTACAGTCACTGATCATTGTTACTTCTCAAGCTGTTACAAC 1664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1616 AAAGGCCTCTATAACGAGGTTACAGTCACTGATCATTGTTACTTCTCAAGCTGTTACTAC 1675
Query 1665 CACATCTACTGCCATAATCCGTCTTCGTGATACCGACCTTGTTCCACAACTCGTTGAGCT 1724
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1676 CACATCTACTGCCATCATCCGTCTTCGTGATACTGACCTTGTTCCACAACTCGTTGAGCT 1735
Query 1725 CTGTCATGGCTTTATGTACATGTGGAAATCTATGCATCAATACCATGAGACTCAGAACAG 1784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 CTGTCATGGCTTTATGTACATGTGGAAATCTATGCATCAATACCATGAGACTCAGAACAG 1795
Query 1785 CATCGTGGAGCAAGTTCGGGGGCTCATTAACAGATCGGGCAAAGGCGAATCAACCTCCGA 1844
||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1796 CATCGTGGAGCAAGTCCGGGGGCTCATTAACAGATCGGGCAAAGGCGAATCAACATCTGA 1855
Query 1845 GCTACACCGACAAGCAACACGTGACTTGGAATCAGCTGTCTCTTCTTGGCACTCCAGTTT 1904
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 GCTACACCGACAAGCTACACGTGACTTGGAATCAGCTGTCTCTTCTTGGCACTCCAGTTT 1915
Query 1905 CAGTCGTCTGATTAAATTCCAACGTGACTTCATACACTCAGTTCACGCCTGGTTCAAGCT 1964
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 CAGTAGTTTGATTAAATTCCAACGTGACTTCATACACTCAGTTCACGCCTGGTTCAAGCT 1975
Query 1965 AACCCTTCTTCCGGTTTGCCAAGAAGACGCCGCCAATCATCATAAAGAGCCGCTCGATGC 2024
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1976 GACCCTTCTTCCGGTTTGCCAAGAAGACGCCGCCAATCATCACAAAGAGCCGCTCGATGC 2035
Query 2025 TTACGCCTTCTGCGATGAGTGGAAACTCGCGCTAGACCGTGTTCCCGATACAGTCGCATC 2084
|||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| |||||
Sbjct 2036 TTACGCCTTCTGCGATGAGTGGAAACTCGCTCTAGATCGTATTCCCGATACAGTTGCATC 2095
Query 2085 CGAAGCAATCAAGAGCTTCATCAACGTTGTACACGTGATATCCGCGAAACAAGCCGATGA 2144
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2096 TGAGGCAATCAAGAGCTTCATCAACGTTGTACACGTGATATCCGCAAAACAAGCCGATGA 2155
Query 2145 ACACAAGATAAAGAAAAGAACAGAAACAGCATCAAAAGAGCTTGAGAAGAAGGCTTCGTC 2204
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2156 ACACAAGATAAAGAAAAGAACAGAATCAGCATCAAAAGAGCTTGAGAAGAAGGCTTCGTC 2215
Query 2205 GCTTAGAAACCTAGAGAGAAAATACTACCAGTCATACTCAGTGGTTGGTTTAGGTTTACC 2264
| |||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||
Sbjct 2216 GGTTAGAAACCTAGAGAGAAAATACTACCAGTCATACTCAATGGTTGGTGTCGGTTTACC 2275
Query 2265 AGAGTCAGGACCCGATAACCAGCACATGTTAGATGCTCGAGACCCGTTAAGCGATAAAAA 2324
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 2276 AGAGTCAGGACCCGATAACCAACACATGTTAGACGCTCGAGACCCGTTAAGCGATAAAAA 2335
Query 2325 GTCAGAGCTTGCGGTTTGCCAAAGCAGAGTAGAGGAAGAGATGGTGAAATACTCAAAGGC 2384
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 2336 GTCAGAGCTTGCGGTTTGCCAAAGGAGAGTTGAGGAAGAGATGGTGAAATACTCAAAGGC 2395
Query 2385 AATAGAAGTGACAAGGGCCATGACTTTGAATAATTTGCAGACAGGGTTGCCTGGTGTGTT 2444
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2396 AATAGAAGTGACAAGAGCCATGACTTTGAATAATCTGCAGACAGGGTTGCCTGGTGTGTT 2455
Query 2445 CCAATCTTTAACAAGCTTCTCTGCTTTGTTCATGGAGTCTCTTCAAACGGTATGCACTCG 2504
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2456 CCAATCTTTAACAAGTTTCTCTGCTTTGTTCATGGAGTCTCTTCAAACGGTATGCACTCG 2515
Query 2505 CTCATACTCTATCAAATAGGACATTATAT-T-ATATACACATATAAATTGATATTCTTAC 2562
||||||||||||||||||||||||||||| | ||||| | ||||| |||||||| |||||
Sbjct 2516 CTCATACTCTATCAAATAGGACATTATATATTATATATATATATATATTGATATGCTTAC 2575
Query 2563 AGAGTT-ACAGTAACAATTTTGACGTCAGTTATTGTATTGTTCCTTTTTTACCAAGAAAG 2621
|||||| |||||||||||| ||| ||||||||||||| ||||||||||||||||||||||
Sbjct 2576 AGAGTTTACAGTAACAATTGTGAGGTCAGTTATTGTAATGTTCCTTTTTTACCAAGAAAG 2635
Query 2622 TGTTGAATACATTTCTATTTATTATGAGGAGAATGTAAATAAACAAAATTTTGAAACTGA 2681
||||| |||||||||||||||||| ||||||||||| ||||||||| ||||||||||||
Sbjct 2636 TGTTGGATACATTTCTATTTATTACAAGGAGAATGTATATAAACAAAGTTTTGAAACTGA 2695
Query 2682 GGGCGTCGCT 2691
||| ||||||
Sbjct 2696 GGGAGTCGCT 2705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133644736152
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5