BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486507
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60340.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1953 0.0
> AT3G60340.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:22304159-22306512 FORWARD LENGTH=1247
Length=1247
Score = 1953 bits (1057), Expect = 0.0
Identities = 1168/1221 (96%), Gaps = 9/1221 (1%)
Strand=Plus/Plus
Query 1 TCGAGAGATTGATTATAAAATCCGGTCGGAGACGATACTAACTTTCGCCGCAAATTTACC 60
||||||||||||||||||||||||||||| ||||| ||| ||||||||||| || |
Sbjct 35 TCGAGAGATTGATTATAAAATCCGGTCGGCGACGAGACTTACTTTCGCCGC-AA---A-- 88
Query 61 ATCTTTTGTTCTCCCGAAGAAAATGGCTTTTCTTAAGGCAGCGATTATTGTTGCCCTAAT 120
| |||||||||| ||||| ||||| ||||||||||||| ||||||| |||||||||||
Sbjct 89 A---TTTGTTCTCCGGAAGAGAATGGATTTTCTTAAGGCAACGATTATAGTTGCCCTAAT 145
Query 121 TTGCAATTTCGTCTCAGTGGCTTCTTCTGTTCCTTTCATAGTTCTGCATGGAATTGGGGA 180
||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 146 TTGCAATTTCGCCTCACTGGCGTCTTCTGTTCCTTTCATAGTTCTGCATGGAATTGGGGA 205
Query 181 TAAATGCAGTAATGCAGGAGTGACACAATTTACAGAGCTTTTAAGTGATTGGTCTGGTTC 240
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 206 TAAATGCAGTAATGCAGGAGTGACACAATTCACAGAGCTTTTAAGCGATTGGTCTGGTTC 265
Query 241 TCAAGGCTATTGCATGGAGATTGGGAATGGCTCATGGGACTCATGGACTATGCCTCTCCT 300
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 TCAAGGATATTGCTTGGAGATTGGGAATGGCTCATGGGACTCATGGACTATGCCTCTCCT 325
Query 301 TGATCAGACATCAGTTGTTTGTGAGAAGGTGAAAAGTATGCCAGAGCTTAGTGACGGTTA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 TGATCAGACATCAGTTGTTTGTGAGAAGGTGAAAAGTATGCCAGAGCTTAGTGACGGTTA 385
Query 361 CAGCATTGTGGGGCTTTCTCAGGGTAACATGATTGGTCGAGCTCTCATTGAGTTTTGCGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 CAGCATTGTGGGGCTTTCTCAGGGTAACATGATTGGTCGAGCTCTCATTGAGTTTTGCGA 445
Query 421 TGGAGCACCACCTGTTAAGAATTTTGTATCGGTAGCGGGTCCTCATGCTGGAACTGCATC 480
|||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||
Sbjct 446 TGGAGCACCACCTGTTAAGAGTTTTGTTTCGGTAGCGGGTCCTCATGCTGGCACTGCATC 505
Query 481 GATTCCGTTCTGTGGCGCTACCTGGATTTGCATCATGTTGGACAGTATGATCAAAGCAGA 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 GATTCCGTTCTGTGGTGCTACCTGGATTTGCATCATGTTGGACAGTATGATCAAAGCAGA 565
Query 541 GATCTATAGCGACTATATGCAGGAACATTTGGCTCCTAGCGGTTTTCTCAAAATCCCAAC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 GATCTATAGCGACTATATGCAGGAACATTTGGCTCCTAGCGGTTTTCTCAAAATCCCAAC 625
Query 601 TGACATAGCGGGTTACATGGAAGGCTGTAGGTTTCTACCAAAGCTAAACAACGAACTTCC 660
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 626 TGACATAGCGGGTTACATGGAAGGCTGTAGGTTTCTCCCAAAGCTAAACAACGAACTTCC 685
Query 661 AGTAAAAAACTCGACTTATAAGGAGAGGTTCTCAAGCTTGGAGAATCTTGTGCTTATTAT 720
||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 686 AGTCAAAAACTCGACTTATAAGGAGAGGTTCTCGAGTTTGGAGAATCTTGTGCTTATTAT 745
Query 721 GTTTGAGCATGACACAATATTGATACCTAAAGAGACCTCATGGTTTGGATATTATCCTGA 780
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 746 GTTTGAGCATGACACAATATTGATACCTAAAGAAACCTCATGGTTTGGATATTATCCTGA 805
Query 781 TGGGTCTTTCAAGACCATTCTTCCGCCGCAAGAGACCAAGCTATATACTGAAGACTGGAT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 TGGGTCTTTCAAGACCATTCTTCCGCCGCAAGAGACCAAGCTATATACTGAAGACTGGAT 865
Query 841 CGGTTTGAGAACATTAGATGAAGCTGGAAAGGTGAAGTTCGTTAACGTCTCTGGAAATCA 900
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 866 TGGTTTGAGAACCTTAGATGAAGCTGGAAAAGTGAAGTTCGTTAACGTCTCTGGAAATCA 925
Query 901 TCTTCAGATATCTCATACAGACATGAAGAAGCATATAGTGCCATACCTCTGTGATAAAGC 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 926 TCTTCAGATATCTCATACAGACATGAAGAAGCATATAGTGCCATACCTCTGTGATAAATC 985
Query 961 ATCATCGTCATCATCCACAACAATGGCAGTTTCCGGGTCATCTTTCTCACACCAGTGGCT 1020
||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 986 ATCGTCGTCATCATCCACAACAATGGCAGTTTCCGGATCATCTTCCTCACACCAGTGGCT 1045
Query 1021 TCCAAGTGTAGGGAACTTTATTATGGATCTGACTGGTCCAGAAGTGGATCAGCTTCAGCT 1080
|||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1046 TCCAAGTGTAGGGAACATTATTATGGATCTTATTGGTCCAGAAGTGGATCAGCTTCAGCT 1105
Query 1081 TGTGCTACGTCGTGTGTGAATCTGATGTCCTGTGTTGTTGTTTGTTCTCTTACTAAACAC 1140
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 TGTGCTACGTCATGTGTAAATCTGATGTCCTGTGTTGTTGTTTGTTCTCTTACTAAACAC 1165
Query 1141 AATCGTGTCGTGATAAGTTTGTAACTAGATGATAAAACAAGAGAAGTGTTCCAAAATCCC 1200
||||| |||||||| |||||||||| || |||||||||||| || ||||||||||||||
Sbjct 1166 GATCGTCTCGTGATATGTTTGTAACTTGAAGATAAAACAAGAAAACTGTTCCAAAATCCC 1225
Query 1201 TCTCAAAAAGGTTCTTATAGT 1221
||||||||| |||||||||||
Sbjct 1226 TCTCAAAAAAGTTCTTATAGT 1246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5