BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486509
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60360.1 | Symbols: EDA14, UTP11 | embryo sac development ar... 1389 0.0
> AT3G60360.1 | Symbols: EDA14, UTP11 | embryo sac development
arrest 14 | chr3:22312258-22314400 REVERSE LENGTH=1098
Length=1098
Score = 1389 bits (752), Expect = 0.0
Identities = 875/933 (94%), Gaps = 14/933 (2%)
Strand=Plus/Plus
Query 108 CCCTGTATTTCACCGTCGAGAGCAATTCCAAGATGTCGTCGCTGCGTAATGCTATTCCAC 167
||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 161 CCCTGTATTTCACCGTCAAGAGCAAATCCAACATGTCGTCGCTGCGTAATGCTATTCCAC 220
Query 168 GTCCTGCTCATAAGGAGCGATCTCAACCGCAAGCGAGGAAGAGGTTTGGCCTCCTCGAAA 227
| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct 221 GGCCTGCTCATAAGGAGCGATCTCAACCGGAAGCGAGGAAGAGGTTTGGCATCCTCGAGA 280
Query 228 AGCATAAGGATTATGTTATCCGAGCTAATGCTTATCACAAAAAGCAGGAAACTTTAAAGA 287
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 AGCATAAGGATTATATTATCCGAGCTAATGCTTATCACAAAAAGCAGGAAACTTTAAAGA 340
Query 288 TACTGAGGCAGAAGGCGGCATTCAAGAATCCAGATGAATTCAACTTTAAGATGATCAATA 347
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 341 TACTTAGGCAGAAGGCTGCATTCAAGAATCCAGATGAATTCAACTTTAAGATGATTAATA 400
Query 348 GTAAAACTGTTGATGGATATCATAGACCAAAGGATGAGGTAAATAAATACTCTGCGGAAG 407
||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 401 GTAAAACAGTTGATGGACGTCATAGACCAAAAGATGAGGTAAATAAATACTCTGCGGAAG 460
Query 408 AGCTCATGATCATGAAGACCCAAGATATTGGATATGTGTTCCAAAAATGGCAGAGTGAGA 467
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 461 AGCTTATGATTATGAAGACTCAAGATATTGGATATGTGTTCCAAAAATGGCAGAGTGAGA 520
Query 468 AAAACAAAATTGAAAAGCTGACTGCATCCCTGCAATGTACTGGGGGTCAGTCAAGCCGTA 527
||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 521 AAAACAAAATTGACAAGCTGACTGCATCGCTGCAATGTACTGGGGATCAGTCAAGCCGTA 580
Query 528 GACATATTTACTATGCTGAAGACAGAGAGGAGGCTAGAGAACTGGAGTTACAAGGTAGAA 587
||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 581 GACATGTTTACTATGCAGAAGACAGAGAGGAGGCTAGAGAACTGGAGGTACAAGGTAGAA 640
Query 588 GCAAAAGCGATATCTCTGCAGTAGAGATTCCGAAAGATATTAAGAAGAAAATGGATAGGT 647
||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 641 GCAAAAGTGATATCTCTACAGTAGAGATTCCGAAAGATATTAAAAAGAAAATGGATAGGT 700
Query 648 CCTATAGAGACCTCGAGGCGCGGAAGAGCAGGGCTAAAGATTTGGAGAAGTTATACACGG 707
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 701 CCTATAGAGACCTCGAGGGGCGGAAGAGCAGGGCTAAAGATTTGGAGAAGTTATACACGG 760
Query 708 ATATGTCAATGCAGAAGGAATTACAGAAAAAGGGTCGCAAACGTAAGCTGCGTGATGACG 767
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 761 ATATGTCAATGCAGAAGGAGTTACAGAAAAAGGGTCGCAAACGGAAGCTGCGTGATGACG 820
Query 768 AGCTACTCAATCCAAATGGTAAAGCGGTATACAAATGGAGCGCCGATAGAAAACGCTGAA 827
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 821 AGCTGCTCAATCCAAATGGTAAAGCGGTATACAAATGGCGCGCCGATAGAAAACGCTGAA 880
Query 828 GAGAAAAGGTTTCATGGTTGTGTAGCTTGACATCATTTTTCTGACCTCTACTAAAGTTTA 887
|||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 881 GAGAAAAGCTTTCATGGTTGTGTAGCTTGACATCATTTTTCTGATCTCTATTAAAGTTTA 940
Query 888 TATAGCAGAG-AGTT--ATTATAGTTTTT---ATCTCCAGAACCTGCAGAACCTTAGATA 941
|||||||| | |||| |||||||||||| |||||||||||||||||||| ||| |||
Sbjct 941 TATAGCAG-GCAGTTTTATTATAGTTTTTTTGATCTCCAGAACCTGCAGAACTTTACATA 999
Query 942 ACA-TTTTGGATGGGACAATTTTTGTTTACTTTAA-CTCCTTGTTGCGTATCTGGAAAAG 999
|| |||||||||||||||| | |||||||||||| ||| ||||||||||||||||||||
Sbjct 1000 -CAATTTTGGATGGGACAATATCTGTTTACTTTAAGCTCTTTGTTGCGTATCTGGAAAAG 1058
Query 1000 tttttttttttAATTTGATTGACGAAATTTAAA 1032
|||| | ||| ||||||||||||| ||||
Sbjct 1059 TTTTACT----AATGTGATTGACGAAATATAAA 1087
Score = 165 bits (89), Expect = 8e-40
Identities = 103/109 (94%), Gaps = 3/109 (3%)
Strand=Plus/Plus
Query 1 CCCaaaaaaaCCCTAAACTCTTCTTGTCGCCGACTTCTCTAACTCCTTTCCAGAAATCAA 60
||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||
Sbjct 15 CCCCAAAAAACCCTAAACTCTTCTTCTCGCCGACTTCTCTA-CTCCTTTCCAGAAACCAA 73
Query 61 GTTTCAGGTCATCGGTGAA-TT-GTTGTGTTCCCGGCGACTTCTACTTT 107
||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 74 GTTTCAGGTCATCGGTGAAATTTGTTGTGTTCCCGGCGACTTCTACTTT 122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50585786029
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5