BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486510
Length=1004
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60370.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans i... 1563 0.0
> AT3G60370.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans
isomerase family protein | chr3:22314732-22316550 REVERSE LENGTH=1014
Length=1014
Score = 1563 bits (846), Expect = 0.0
Identities = 956/1008 (95%), Gaps = 12/1008 (1%)
Strand=Plus/Plus
Query 1 CGCCGGAGGGAGAAGCTATGGTGACGATTCTATCAACTACTCCTCTCTCTCCAAGACTTA 60
|||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1 CGCCGGAGGGAGAAGCAATGGTGACGATTCTATC-A--ACTCCTCTCTCTCCAAGACTTA 57
Query 61 CATTTCTCTGTGAAACAAAACTGTCATTATCTCGGAGCAGCAAACGCTCGGTATGTTGTT 120
||||||||||||||||||||||||||||||||| | | ||||| ||||||||||||||||
Sbjct 58 CATTTCTCTGTGAAACAAAACTGTCATTATCTC-G-G-AGCAATCGCTCGGTATGTTGTT 114
Query 121 CATTGAGTGAAGAATCAAAAGACCAATGCTTGAGTCGGAGAAGTCTTGTTTATGTTTTGG 180
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 115 CATTGAGTGAAGAACCAAAAGACCAATGCTTGAGTCGGAGAAGTCTTGTTTATGTTTTAG 174
Query 181 TTGCTTCGCCGTGTTTGTTGTTTCCGGCGTTATCTTCATCTGCGAAGACTAAATCAAAGA 240
|||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 175 TTGCTTCGCCGTGTTTGTTGTTACCAGCGTTGTCTTCATCTGCGAAGACTAAATCAAAGA 234
Query 241 GCCCTTATGATGAGAGACGGTTACTGGAACAGAACAAGAGGATACAGAGAGAGAACAATG 300
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 235 GTCCTTATGATGAGAGACGGTTACTAGAACAGAACAAGAGGATACAGAGAGAGAACAATG 294
Query 301 CTCCTGACGAATTTCCTAACTTTGTTAGAGAAGGTTTTGAGGTTAAGGTAGTAGCTTCAG 360
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 295 CTCCTGACGAGTTTCCTAACTTTGTTAGAGAAGGTTTTGAGGTTAAGGTATTAGCTTCTG 354
Query 361 AGAATTACATCAAGGCTGATTCTGGCCTCATATATCGGGATTTCGATGTTGGTCAAGGTG 420
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 355 ATAATTACATCAAGGCTGATTCTGGCCTCATATATCGGGATTTCAATGTTGGTCAAGGTG 414
Query 421 ATTCCCCAAAAGATGGTCAGCAGGTGACTTTTCACTACATTGGCTACAATGAGTCTGGAA 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 ATTTCCCAAAAGATGGTCAGCAGGTGACTTTTCACTACATTGGCTACAATGAGTCTGGAA 474
Query 481 GGCGAATAGATAGCACTTACATACAAGGTTCTCCTGCGAGAATTCGCATGGGGACCAATG 540
||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 475 GGCGAATAGATAGTACTTACATACAAGGTTCTCCTGCTAGAATCCGCATGGGAACCAATG 534
Query 541 CACTTGTTCCAGGATTTGAAATGGGAATTCGTGACATGAAGCCCGGTGGGCGAAGAAGGA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CACTTGTTCCAGGATTTGAAATGGGAATTCGTGACATGAAGCCCGGTGGGCGAAGAAGGA 594
Query 601 TTATTATCCCTCCAGAATTGGGACCTCCGGTGGGACCTTCGACCTTCTTCAGCTCAAAGC 660
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 595 TTATAATCCCTCCAGAATTGGGACCTCCGGTGGGACCTTCGACCTTCTTCAGCTCGAAGC 654
Query 661 AATTTGAAGTTTTCGACGTGGAGTTGCTCAGTATCCAGAATTGTGAGAGGAGGACAATAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 655 AATTTGAAGTTTTCGACGTGGAGTTGCTCAGTATCCAGAATTGTGAGAGGAGGACTATAA 714
Query 721 TAGGATTCTACTCAGACGTCACATGCAGTTAACTTCTAAATGATGGTCACCACTAAGCTT 780
|||| ||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 715 TAGGTTTCTACTCAGATGTCACATGCAGTTAACTTCCAAATGATGGTCATCACTAAGCTT 774
Query 781 CAATGAATCTGCATTCACCATTACT-CGAA-ACTCTATATCTGCACGGCAGATGAAAACT 838
||||||| |||||||| || | || | || |||||| ||||||||||||||||| ||||
Sbjct 775 CAATGAACCTGCATTCTTCAAT-CTTC-AATACTCTAAATCTGCACGGCAGATGAGAACT 832
Query 839 GCAAAGAAACAAAAAGAACAAATCTTCTTTGCTTAGGCATTTATCTTATGGGTTTCATGC 898
|||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 833 ACAAAGAAACAAAAAGAACAATTATTCTTTGCTTAGGCATTTATCTTGTGGGTTTCATGT 892
Query 899 AGAGGTGCACAATTACATAGAGAGA--GATAAAGATCGTGTAAAGTCTCGACCTTTTTCA 956
|||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 893 AGAGATGCACAATTACATAGAGAGACAGATAAAGATCATGTAAAGTCTCGACCTTTTTCA 952
Query 957 TAATCGTAGTTTACTTTTGTTGCTTGGTTGATCACGTTTTAAGCGTTT 1004
||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 953 TAATCGTAGTTTACTTTTGTTGCTTTGTTGATCACGTTTTAAGCGTTT 1000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49179229913
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5