BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486512
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60390.1 | Symbols: HAT3 | homeobox-leucine zipper protein 3... 1962 0.0
> AT3G60390.1 | Symbols: HAT3 | homeobox-leucine zipper protein
3 | chr3:22320595-22322586 REVERSE LENGTH=1357
Length=1357
Score = 1962 bits (1062), Expect = 0.0
Identities = 1271/1365 (93%), Gaps = 41/1365 (3%)
Strand=Plus/Plus
Query 1 CCACAACCCCATATCTCTTTGTCTGAAAAAACTCTTTTGC--ATAT--ATAAATATAAGC 56
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1 CCACAACCCCATATCTCTTTGTCTGAAAAAACTCTTTTGCATATATAAATAAATATAAGC 60
Query 57 CATATC-TTTGAAACTGTACTGCTGCACAAGTGTAGAGGCAGTGGCACAACATCTTTAAG 115
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CATATCTTTTGAAACTGTACTGCTGCACAAGTGTAGAGGCAGTGGCACAACATCTTTAAG 120
Query 116 -AAGAAAGAGAGAGA-AGTCATTTATTCATTTTCTCTCGCTAAAAAATCTTGAGAACCCA 173
|||| ||||||| | ||||||||||||| |||| |||||| |||||||||||| |||||
Sbjct 121 AAAGAGAGAGAGAAAGAGTCATTTATTCA-TTTC-CTCGCTTAAAAATCTTGAGCACCCA 178
Query 174 GACATAA----------TT-TTTCT----TTGAGAAAAATGGGTGAAAGAGATGATGGAT 218
|||| || || ||||| |||||||||||| ||||||||||||||||||
Sbjct 179 GACAGAATTCTTCTTTCTTCTTTCTGGGGTTGAGAAAAATGAGTGAAAGAGATGATGGAT 238
Query 219 TGGGGCTAAGTTTGAGCTTGAGTTTAGGTTTTAATCATAAGGACCCGTCTTCGAGATTAA 278
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 239 TGGGGCTAAGTTTGAGCTTGAGTTTAGGTTTTAATCAAAAGGACCCGTCTTCGAGGTTAA 298
Query 279 ATCCAATGCCTCTGGCTTCTTATTCATCTTCATCACACAT---GCATATGCAGCAGAGCA 335
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 299 ATCCAATGCCTCTGGCTTCTTATGCATCTTCATCACACATGCAGCATATGCAGCAGAGCA 358
Query 336 ATTATAGCCATCCTCAAAAGATTCAGAACACTTGGATTAACATGTTTCAATCTTCAGAGA 395
|||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 359 ATTATAACCATCCTCAAAAGATTCAGAACACTTGGATTAACATGTTTCAGTCATCAGAGA 418
Query 396 GAAACTCCGACATGAGATCGTTTCTCCGGGGAATAGACGTGAACAGAGCTCCATCGACGG 455
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GAAACTCGGACATGAGATCGTTTCTCCGGGGAATAGACGTGAACAGAGCTCCATCGACGG 478
Query 456 TGGTTGTTGATGTGGAGGATGACGGAGCCGGAGTCTCATCTCCGAATAGCACCGTGTCAA 515
|||| ||||| ||||||||||| || |||||||| || |||||||| |||||||| ||||
Sbjct 479 TGGTGGTTGACGTGGAGGATGAAGGCGCCGGAGTTTCGTCTCCGAACAGCACCGTCTCAA 538
Query 516 GCGTGATGAGCGGGAAGAGGAGCGAGCGGGAGCTAATGACTGCGGCAGCTGCAGCCGGAG 575
|||||||||||||||||| ||||||||| ||||||||| ||||||||| |||| | |
Sbjct 539 GCGTGATGAGCGGGAAGAAGAGCGAGCGAGAGCTAATGGCTGCGGCAGGTGCA---GTTG 595
Query 576 GAGGAGGTAGAGTAGAAGATAACGAGATGGAGAGAGCTTCTTGCTCGCTCGGCGGTGGTA 635
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 596 GAGGAGGTAGAGTAGAAGATAATGAGATTGAGAGAGCTTCTTGCTCGCTCGGCGGTGGTA 655
Query 636 GCGACGATGAAGACGGTAGCGGGAACGGAGACGACGGTTCGAGGAAGAAACTCCGTTTGT 695
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||
Sbjct 656 GCGACGATGAAGACGGTAGCGGGAACGGAGATGACAGTTCGAGGAAGAAACTCCGATTGT 715
Query 696 CTAAAGAACAAGCTTTGGTTCTCGAAGAAACTTTTAAAGAACATAGCACACTCAATCCGA 755
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 716 CTAAAGAACAAGCTTTGGTTCTTGAAGAAACTTTTAAAGAACATAGTACACTCAATCCGA 775
Query 756 AGCAAAAGATGGCTTTGGCTAAGCAATTGAATCTGAGGACGAGGCAAGTAGAAGTGTGGT 815
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 776 AGCAAAAGATGGCTTTGGCTAAGCAATTGAATCTGAGGACGAGACAAGTTGAAGTGTGGT 835
Query 816 TCCAAAACCGAAGGGCAAGGACGAAGCTGAAGCAAACGGAAGTAGACTGTGAATATCTTA 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TCCAAAACCGAAGGGCAAGGACGAAGCTGAAGCAAACGGAAGTAGACTGTGAATATCTTA 895
Query 876 AGAGATGTTGCGAGAATCTAACGGATGAGAATCGGAGATTGCAAAAGGAAGTGAGTGAGC 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AGAGATGTTGCGAGAATCTAACGGATGAGAATCGGAGATTGCAAAAGGAAGTGAGTGAGC 955
Query 936 TTAGGGCTTTAAAGCTTTCTCCACACTTATACATGCACATGAAACCTCCCACTACTCTCA 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TTAGGGCTTTAAAGCTTTCTCCACACTTATACATGCACATGAAACCTCCCACTACTCTCA 1015
Query 996 CAATGTGCCCTTCTTGCGAGCGAGTCGCTGTTACATCATCTTCGTCATCGGTGGCTCCTC 1055
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1016 CAATGTGTCCTTCTTGCGAGCGAGTCGCTGTTACGTCATCTTCGTCATCGGTGGCTCCTC 1075
Query 1056 CTGTGATGACTTCATCTTCTCCGATGGGACCGATCAGTCCGTGGGCTGCCATTCCTCTCC 1115
||||||||| |||||| ||||||||||| ||||| ||||||||||||||||| ||||| |
Sbjct 1076 CTGTGATGAATTCATCGTCTCCGATGGGTCCGATGAGTCCGTGGGCTGCCATGCCTCTAC 1135
Query 1116 GGCAACGACCTGCTGCTGGTTCTCATTAGAGTTTAATTAATCTAAAGATAATTAGGTTTG 1175
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1136 GGCAACGACCTGCTGCTGGTTCTCATTAGAGTTTAATTAGTCTAAAGATAAT-AGGTTTG 1194
Query 1176 GTGATTTGTTTTTATTATAATGTCAAAACG-ATCTTGGAAGTTCTTTTCAAGAGTTGGGT 1234
||||||||||||||||||| ||| || || | ||||||||||||||||||||||||| |
Sbjct 1195 GTGATTTGTTTTTATTATATTGTTGAA-CGGA-CTTGGAAGTTCTTTTCAAGAGTTGG-T 1251
Query 1235 CC-ATGCTCTTCTTTCCTTTGTTTTATTCAGTTTCTATTTATAACTGAATTGC-GAAAAA 1292
|| |||||||||||||||||||||||||||||||||||||||| ||||||| | | | ||
Sbjct 1252 CCCATGCTCTTCTTTCCTTTGTTTTATTCAGTTTCTATTTATAGCTGAATT-CTGGATAA 1310
Query 1293 TGGaaaaaaaTGTACTAATATTATTGTCGAATTATTAGTTTGGGG 1337
||||||| | |||||||||||||||| ||||||||||||||||
Sbjct 1311 TGGAAAA---TCTACTAATATTATTGTCCAATTATTAGTTTGGGG 1352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65812914495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5