BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486516
Length=1505
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60410.1 | Symbols: | Protein of unknown function (DUF1639)... 2170 0.0
> AT3G60410.1 | Symbols: | Protein of unknown function (DUF1639)
| chr3:22331485-22333652 FORWARD LENGTH=1555
Length=1555
Score = 2170 bits (1175), Expect = 0.0
Identities = 1426/1539 (93%), Gaps = 50/1539 (3%)
Strand=Plus/Plus
Query 1 AGCAATAACATAACTGCCGCTCTTCA-tctctctc---tc--t--ctctGCATTGGCTCT 52
|||||||||||||||||||||||||| |||||||| || | |||| ||||||||||
Sbjct 1 AGCAATAACATAACTGCCGCTCTTCATTCTCTCTCATTTCTTTCGCTCTACATTGGCTCT 60
Query 53 GTG-TTTTTGAATTCTCTATTGATTTCCATTAGGGTTTTCTCACTTTCTTCGATCGTTTG 111
||| |||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 61 GTGTTTTTTGAATTATCTATTGATTTCCATTAGGGTTTTCTCAC-TTCTTTGATCGATTG 119
Query 112 AATTATAGATGTTCCGTCAATCCATGGCGTTTCCTCCACCGACCCATGGTTCTGATGCAC 171
||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 120 AATTATATATGTTCCGTCAATCCATGGCGTTTCCTCCACCGATCCATGGTTCCGATGCAC 179
Query 172 CGCCGCCGCCTCAGCCGCCGTCGGTGGTGAACGGGAGTGAAACCTCTAGAC-G--GCAGC 228
|||||||||| ||||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct 180 CGCCGCCGCCACAGCCGCCGTCGGTGGTGAACGGGATTGAAACCTCTAGACGGCAGCAGC 239
Query 229 AACATATTGCAGCAGCTTCTTCTTCTCCGGTGAAATCCCATCCGCTTCATAACTTCCCTT 288
|||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 240 AACAGATTGCAGCAGCTTCTTCTTCGCCGGTGAAATCTCATCCGCTTCATAACTTCCCTT 299
Query 289 TGTCTGATCTCAGATGGGCTATGAATCACGCCAATACACATCGGCTCCGCAAAGCATCGA 348
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 300 TGTCTGATCTCAGATGGGCTATGAATCACGCCAATACACACCGGCTCCGCAAAGCATCGA 359
Query 349 GTAGATCTCCACTTCGTGAAGCTAATCA-TGGGAAAGGGAATCTGGTGATTGAGGAGGTG 407
|||||||||| ||||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct 360 GTAGATCTCCGCTTCGTGAAGCTAAT-ACTGGGAAAGGAAATCTGGTGATTGAGGAGGTG 418
Query 408 AACGAAGCTTCAGGTTCTTCGTTTGAATTGAGACCGGAGAAGAAGAAGGGAAACAACGCG 467
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 419 AACGAAGCTTCAGGTTCTTCGTTTGAATTGAGACCGGAGAAGAAGAAGGG--A-AACGCG 475
Query 468 GCTGGTGTCAGCGATTCCGCCGCAGATCGATCCGCGACGAAGTCAACGACGCCGGACGGT 527
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 476 TCTGGTGTTAGCGATTCCGCCGCAGATAGATCCGCGACGAAGTCAACGACGCCGGACGGT 535
Query 528 AGATCGAAGATCTTCATACGGATCCGCACGAAGAACAACGAAG-AA-A-C---A--G-CT 578
|||||||||||||| |||||||||||||||||||||||||||| || | | | | ||
Sbjct 536 AGATCGAAGATCTTTATACGGATCCGCACGAAGAACAACGAAGAAACAGCTGTATCGACT 595
Query 579 GATATCGCCACCTCCGTCGTCGCCGCCGCTGTCCAAGTGACTGATGATTCAGCTGGTCAG 638
||||||||||||| | |||||||||| |||| ||||||||||||||||||||||||| |
Sbjct 596 GATATCGCCACCT-C--CGTCGCCGCCTCTGTTCAAGTGACTGATGATTCAGCTGGTCCG 652
Query 639 GCGATCGATGCTGAAGGTGAACGGATCTCCGATGGTGGAGGTCAGGAAGCAGACGAGTTT 698
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 653 GCGATCGATGCTGAAGGTGAACGGATCTCCGATGGTGGTGGTCAGGAAGCAGACGAGTTT 712
Query 699 GGTCCGAAGACTTGGAATCTGAGGCCGAGGAGACCACCGCCGACGAAGAAGCGTTCAATT 758
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 713 GGACCGAAGACTTGGAATCTGAGGCCGAGGAGACCACCGCCGACGAAGAAGCGGTCAATT 772
Query 759 GGACACGGCGGTGGGATACTGAAGAGCTGTAACGGTGCTTTACCGGAGAGCAACAAATCT 818
||||||||||||||| || ||||||||||||||||||||||||| | ||| || ||||||
Sbjct 773 GGACACGGCGGTGGGGTATTGAAGAGCTGTAACGGTGCTTTACC-G-GAG-AATAAATCT 829
Query 819 CTGGGAACGGTTAGAACAGAGTCAATTCGATCCAGGAACGGTGTAGATGCTAAGATGGCG 878
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 830 CTGGGAACGGTAAGAACAGAGTCAATACGATCGAGGAACGGTGTAGATGCTAAGATGGCG 889
Query 879 ACGATGGAAAGAAAGGAGAAGAAACCGAGGTTATCGATTTCGCTCTCAAAGTTGGAGATA 938
|||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 890 ACGACGGAAAGAAAGGAGAAGAAACCGAGGTTATCGATATCGCTCTCAAAGCTGGAGATA 949
Query 939 GATGAAGATATCTACGCGTTGACTGGATCAAAACCTAGCAGGAGACCAAAGAAGAGAGCC 998
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 950 GATGAAGATATCTACGCGTTGACTGGATCAAAACCTAGTAGAAGACCAAAGAAGAGAGCC 1009
Query 999 AAGAACGTGCAGAAGCAGCTCGATGTTCTTTTCCCTGGTTTGTGGATGGGTAACGTTTCT 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 AAGAACGTGCAGAAGCAGCTCGATGTTCTTTTCCCTGGTTTGTGGATGGGTAACGTTTCT 1069
Query 1059 TCAGACGCTTACAAGGTCTCAGAACATGCTTGAAAGGATTGAATGGGAATGATGTGAAGT 1118
||||| || || ||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1070 TCAGAAGCATATAAGGTCTCAGAACATGCTTGAAAGGGTTGAATGAGAATGATGTGAAGT 1129
Query 1119 TAATCTTGTTGAATTGGCTTGGACTGAAATCAGATAGGAGCGTCGAAGAAGCTTCTTCCA 1178
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 1130 TAATCTTGTTGAATCGGATTCGACTGAAATCAGATAGGAGCGTCGAAGAAGCTTCTTCCA 1189
Query 1179 CTGATTGAGGTATAAAAGAACTGCTGAATGATTCGTTTCTTCAAGTGTTGGCTTCATTGC 1238
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
Sbjct 1190 TTGATTGAGGTATAAAAGAACTGC-GAATGATTCGTTTCTTCAAGTTTTGGCTTCATTAC 1248
Query 1239 TGGCTCGCCGGCGGTTTCAAGAGCTGATTTCAACTTCCAACTTCAGATTCGGTC------ 1292
||||||| ||| |||||||||| || ||||||||| |||||||||| |||||
Sbjct 1249 TGGCTCGTCGG---TTTCAAGAGCCGAATTCAACTTC-AACTTCAGATACGGTCTTAAGT 1304
Query 1293 C-TAACTGTCGGCACTATAAAATGTGAATAAAACTAGTTTTCTGATCCAGTCGTCTTATT 1351
| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1305 CCTAACTGTCGGCAGTATAAAATGTGAATCAAACTAGTTTTCTGATCCAGTCGTCTTATT 1364
Query 1352 TGTTACCACTAATGTGAGGTGTTGATACGGCCTTTAtttttttt---CTGTTTA-TTCAT 1407
|||||||||| |||||||||||||||||||||| |||||||||| ||||||| |||||
Sbjct 1365 TGTTACCACTGATGTGAGGTGTTGATACGGCCTCTATTTTTTTTTTTCTGTTTAATTCAT 1424
Query 1408 TCACTTTTTCTAATAAGATTAGTGGGATAGCCTGACCTATTGTAAAGGTAGAAAA-TAAA 1466
||||||| | |||||||||||||||||||||||||| | |||||||||| ||||| ||||
Sbjct 1425 TCACTTTGTGTAATAAGATTAGTGGGATAGCCTGACTTTTTGTAAAGGTGGAAAAATAAA 1484
Query 1467 ATCAGAATTATCAACAAAATTTCTTTATTTCATTACTAA 1505
|||||||||||||||| ||||| |||||| |||||||||
Sbjct 1485 ATCAGAATTATCAACATAATTTATTTATTCCATTACTAA 1523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74246606055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5