BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486518
Length=949
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60450.1 | Symbols: | Phosphoglycerate mutase family protei... 1578 0.0
AT3G60440.1 | Symbols: | Phosphoglycerate mutase family protei... 654 0.0
AT3G60420.2 | Symbols: | Phosphoglycerate mutase family protei... 455 4e-127
> AT3G60450.1 | Symbols: | Phosphoglycerate mutase family protein
| chr3:22340957-22342315 FORWARD LENGTH=978
Length=978
Score = 1578 bits (854), Expect = 0.0
Identities = 915/945 (97%), Gaps = 2/945 (0%)
Strand=Plus/Plus
Query 1 GAAGAAGAAAGAAACAATGGAGTCTCCCAAATCTAACATGGACGATGGCTACCAAAACAT 60
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 10 GAAGAAGAAAGAAACAATGGAGTCTCCCAAATCTAACGTCGACGATGGCTACCAAAACAT 69
Query 61 CTTCGTCATGCGTCACGGTGATCGAATCGACAATTTCGAGCCACTCTGGGTTTCAACCGC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 CTTCGTCATGCGTCACGGTGATCGAATCGACAATTTCGAGCCACTCTGGGTTTCAACCGC 129
Query 121 CGAGAGACCTTGGGATCCGCCTCTGGTTCAAGACGGTATGATTCGAGCTTTTCGTACCGG 180
|||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |||||
Sbjct 130 CGAGAGACCTTGGGATCCACCTTTGGTTCAAGACGGTATGATTCGAGCGTTTCGAACCGG 189
Query 181 TCAAAGGATCCGATCTCAGATCGGGTTTCCGATTCACCGTGTCTTCGTCTCCCCTTTCCT 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 190 TCAAAGGATCCGATCTCAGATCGGGTTCCCGATTCACCGTGTCTTCGTCTCCCCTTTCCT 249
Query 241 CCGATGTCTCCAGACAGCTTCCGAAGTCGTCGCAGCTCTCTCCGCCGTCAATGTCGATCC 300
||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 250 CCGATGTCTTCAGACAGCTTCCGAAGTCGTCGCAGCTCTATCAGCCGTCAATGTCGATCC 309
Query 301 CAACGCTATGTCTTCCAAAGACGTCCCTTCCATTGATAAATCTAAGCTCAAGGTTTCTAT 360
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 TAACGCCATGTCTTCCAAAGACGTCCCTTCCATTGATAAATCTAAGCTCAAGGTTTCTAT 369
Query 361 TGAATTAGGTTTGTGTGAGATGCTGAACTCAGTGGCTATAAGGCGTGAGCTTGCTCCTAA 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 370 TGAATTAGGTTTGTGTGAGATGTTGAACTCAGTGGCTATAAGGCGTGAGCTTGCTCCTAA 429
Query 421 AGATGGGAAATTTGACTTCACTATTTCAGATATTGAAACTATGTTTCCTGAGGGAATGGT 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 430 AGATGGGAAATTTGACTTCACTGTTTCAGATATTGAAACTATGTTTCCTGAGGGAATGGT 489
Query 481 GGATCATAATGTCGATATGGTTTATAAAGAGTTGCCAAAATGGGAAGAGTCTGTCGAAGG 540
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 490 TGATCATAATGTGGATATGGTTTATAAAGAGTTGCCTAAATGGGAAGAGTCTGTGGAAGG 549
Query 541 TTGCAGAGATCGATATGTGAAAGTTGTAAAGGCTCTTGCTGATAAGTATCCTTCAGAGAA 600
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 550 TTGCAGAGATCGATATGTTAAAGTTGTAAAGGCTCTTGCTGATAAGTATCCTGAAGAGAA 609
Query 601 CTTGCTCTTAGTCACCCACGGGGAAGGAGTTGGAACTACATTTTCGACATTCTATAAAGA 660
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 CTTGCTCTTAGTAACCCACGGGGAAGGAGTTGGAACTACATTTTCGACATTCTATAAAGA 669
Query 661 TACAACAGTGTACGAAGTAGACTACTGTGCTTATGTTGAAATGAGAAGAGAAGTCTCAAG 720
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 670 TACAACAGTGTACGAAGTAGACTACTGTGCTTATGTTGAAATGAGAAGACAAGTCTCAAG 729
Query 721 TAAAGATGGGTCTGTTAAAGCTGGGGACTATGAGGTGGTTTTGAGTCATGGTCAAGCTGG 780
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 TGAAGATGGGTCTGTTAAAGCTGGGGACTATGAGGTGGTTTTGAGTCATGGTCAAGCTGG 789
Query 781 AATCAGGTTTAGTCATGATCCTGTCAGTTATGAACCTGTCATAAGCCAATCACCGGTTTA 840
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 790 GATCAGGTTTAGTCATGATCCTGTCAGTTATGAACCTGTCATAAGCCATTCACCTGTTTA 849
Query 841 GTCAA-TTGTCTTCAGTGTCCTCTGTTTCTGTACTTTTGA-TTGTATTTGAACTGCATTT 898
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 850 GTCAAATTGTCTTCAGTGTCCTCTGTTTCTGTACTTTTGAATTGTATTTGAACTGCTTTT 909
Query 899 GTATGAATTATGAAACATTGTTTCAAAGTTTTCATTCAATCGAAT 943
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 GTATGAATTATGAAACATTGTTTCAAAGTTTTCATTCAATCGAAT 954
> AT3G60440.1 | Symbols: | Phosphoglycerate mutase family protein
| chr3:22337793-22339446 FORWARD LENGTH=1204
Length=1204
Score = 654 bits (354), Expect = 0.0
Identities = 647/786 (82%), Gaps = 29/786 (4%)
Strand=Plus/Plus
Query 13 AACAATGGAGTCTCCCAAATC-TAACATGGACGATGGCTACCAAAACATCTTCG-TCATG 70
||||||||||||| | ||||| || || |||| |||||||||| ||||| | | |||
Sbjct 93 AACAATGGAGTCTGCTAAATCAAAAAAT-CCCGATAGCTACCAAAATATCTT-GATGATG 150
Query 71 CGTCACGGTGATCGAATCGACAATTTCGAGCCACTCTGGGTTTCA-ACCGCCGAGAGACC 129
|||||||||||||| || ||||| |||| ||||||| || || | || || | ||||||
Sbjct 151 CGTCACGGTGATCGCATTGACAAAATCGATCCACTCT-GGCTTGATACAGCTGCGAGACC 209
Query 130 TTGGGATCCGCCTCTGGTTCAAGACGGTATGATTCGAGCTTTTCGTACCGGTCAAAGGAT 189
||||||||| ||||| ||||||||||||||| |||| || |||| || |||||| ||||
Sbjct 210 TTGGGATCCTCCTCTCGTTCAAGACGGTATGGTTCGTGCGTTTCAAACTGGTCAACGGAT 269
Query 190 CCGATCTCAGATCGGGTTTCCGATTCACCGTGTCTTCGTCTCCCCTTTCCTCCGATGTCT 249
|||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 270 TCGATCTCAGATCCAATTTCCGATTCACCGTGTCTTCGTCTCTCCTTTTATCCGATGTAT 329
Query 250 CCAGACAGCTTCCGAAGTCGTCGCAGCTCTCTCCGCCGTCAATGTCGATCCCAACGCTA- 308
||||| |||||||||||| |||| ||||||||||||||| || ||||||| |||||||
Sbjct 330 ACAGACTGCTTCCGAAGTCATCGCTGCTCTCTCCGCCGTCGATTTCGATCCTAACGCTAC 389
Query 309 TGTCTTCCAAAGACGTCCCTTCCATTGATAAATCTAAGCTCAAGGTTTCTATTGAATTAG 368
| || |||||||||||| |||| || ||||||| |||||| |||||||| |||||||| |
Sbjct 390 T-TCGTCCAAAGACGTCACTTCAATCGATAAATATAAGCTTAAGGTTTCCATTGAATTTG 448
Query 369 GTTTGTGTGAGATGCTGAACTCAGTGGCTA-TAAGGCGTGAGCTTGCTCCTAAAGATGGG 427
||||| ||||||||||||| ||| | |||| ||| || |||| ||||||| |||||||||
Sbjct 449 GTTTGAGTGAGATGCTGAATTCAATTGCTATTAA-GCCTGAGATTGCTCCCAAAGATGGG 507
Query 428 AAATTTGACTTCACT-ATTTCAGATA-TTGAAACTATGTTTCCTGAGGGAATGGTGGATC 485
||||| || |||| | |||||||| | ||||| | || |||||||| |||||||| ||||
Sbjct 508 AAATTCGATTTCA-TGATTTCAGA-ACTTGAAGCGATTTTTCCTGATGGAATGGTTGATC 565
Query 486 ATAATGTCGAT-ATGGTTTATAAAGAGTTGCCAAAATGGGAAGAGTCTGTCGAAGGTTGC 544
||| ||| ||| | |||||||||||| ||||| ||||||||||| |||| ||||| |||
Sbjct 566 ATAGTGTAGATCCT-GTTTATAAAGAGATGCCACAATGGGAAGAGACTGTGGAAGGCTGC 624
Query 545 AGAGATCGATATGTGAAAG-TTG-TAAAGGCTCTTGCTGATAAGTATCCTTCAGAGAACT 602
| |||| ||| | | || ||| ||||| ||||||||||||||||||||||||||||||
Sbjct 625 ACAGATAGAT-T-TCTTAGTTTGATAAAGACTCTTGCTGATAAGTATCCTTCAGAGAACT 682
Query 603 TGCTCTTAGTCACCCACGGGGAAGGAGTT-GGAACTACATTTTCGACATTCTATAAAGA- 660
||||||| ||||| |||||||||||||| ||| |||||||| | || || || || |
Sbjct 683 TGCTCTTGGTCACTCACGGGGAAGGAGTAAGGA-CTACATTTGCAACCTT-TA-AAGGCG 739
Query 661 TACAACAGTGTACGAAGTAGACTACTGTGCTTATGTTGAAATGAGAAGAGAAGTCTCAAG 720
|||| |||||||| ||||| || |||| || || |||| |||||||| | || || ||
Sbjct 740 TACAT--GTGTACGACGTAGAGTATTGTGGTTGTGCTGAATTGAGAAGACAGGTGTCGAG 797
Query 721 TAAAGATGGGTCTGTTAAAGCTGGGGACTATGAGGTGGTTTTGAGTCATGGTCAA-GCTG 779
||||||||||||| ||||||||| |||| ||||||| | |||| | ||||| | ||
Sbjct 798 TAAAGATGGGTCTACTAAAGCTGGAGACTTTGAGGTGATCACAAGTCTTAGTCAATG-TG 856
Query 780 GAATCA 785
||||||
Sbjct 857 GAATCA 862
> AT3G60420.2 | Symbols: | Phosphoglycerate mutase family protein
| chr3:22334431-22337494 FORWARD LENGTH=1232
Length=1232
Score = 455 bits (246), Expect = 4e-127
Identities = 508/631 (81%), Gaps = 31/631 (5%)
Strand=Plus/Plus
Query 15 CAATGGAGTCTCCCAAATCTAA-CATGGACGATGGCTACCAAAACATCTTCGTCATGCGT 73
|||||||||| | ||||| || ||| || |||| ||||||| || || | ||||||
Sbjct 14 CAATGGAGTCGGCTAAATC-AATCAT---CGGTGGCCACCAAAATGTCATCCTGATGCGT 69
Query 74 CACGGTGATCGAATCGACAATTTCGAGCCACTCTGGGTTTCAACCGCCGAGAGACCTTGG 133
|| ||||||||| ||||||||||||||||||||||| |||||| || | |||||| |||
Sbjct 70 CATGGTGATCGACTCGACAATTTCGAGCCACTCTGGACTTCAACAGCTGCGAGACCGTGG 129
Query 134 GATCCGCCTCTGGTTCAAGACGGT-ATGATTCGAGCTTTTCGTACCGGTCAAAGGATCCG 192
||||| || || | |||||||||| | || ||| || ||| | || ||||| || |||||
Sbjct 130 GATCCACCGCTTGCTCAAGACGGTAAGGA-TCGGGCCTTTAGAACTGGTCAGAGAATCCG 188
Query 193 ATCTCAGA-TCGGGTTTCCGATTCACCGTGTCTTCGTCTCCCCTTTCCTCCGATGTC-TC 250
||||| | | ||| ||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 189 GTCTCA-ACTTGGGGTTCCGATTCACCGTGTCTTCGTCTCCCCTTTCCTCCGCTG-CATC 246
Query 251 CAGACAGCTTCCGAAGTCGTCGCAGCTCTCTCCGCCGTCAATGTCGATCCCAACGCTATG 310
||||| |||||||||||||| || || ||||| |||||| || ||||||||| ||||||
Sbjct 247 CAGACCGCTTCCGAAGTCGTTGCCGCCCTCTCAGCCGTCGATTTCGATCCCATTGCTATG 306
Query 311 TCTTCCAAAGACGTCCCTTCCATTGATAA-ATCTAAGCTCAAGGTTTCTATTGAATTAGG 369
|| || |||||||| | |||||| || || | ||||| ||||||| |||||||||| ||
Sbjct 307 TCATCTAAAGACGTGCTTTCCATCGACAATA-CTAAGATCAAGGTGGCTATTGAATTTGG 365
Query 370 TTTGTGTGAGATGCTGAACTCAGTGGCTAT-AAGGCGTGA-GCTTGCTCCTAAAGATGGG 427
|||| ||||| | | || || | ||| ||| |||| | ||||||| |||||||||
Sbjct 366 ATTGTCCGAGATACCGCACCCAATCTTTATTAAGA-GTGAAG-TTGCTCCCAAAGATGGG 423
Query 428 AAATTTGACTTCACTATTTCAGATATTGAAACTATGTTTCCTGAGGGAATGGTGGAT-CA 486
|||||||| |||| ||||||||| ||||| ||||||||||||| |||| |||||| |
Sbjct 424 AAATTTGATTTCAAGATTTCAGATCTTGAAGCTATGTTTCCTGAAGGAACAGTGGATTC- 482
Query 487 TAATGTCGATATGGTTTATAAAGAGTTGCCAAAATGGGAAGAGTCTGT-CGAAGG-TT-G 543
|||||| |||||||||||||||||| ||||| |||||| ||| |||| | ||| || |
Sbjct 483 TAATGTGGATATGGTTTATAAAGAGGTGCCAGAATGGGGAGAATCTGCAC-AAGCCTTTG 541
Query 544 CAGAGATCGATATGTGA-AAGTT-GTAAAGGCTCTTGCTGATAAGTATCCTTCAGAGAAC 601
|| ||||||||| | | ||| || ||| |||||| || ||||||||||| ||||||
Sbjct 542 -AG-GATCGATAT-T-ATAAGACAGTGAAGATTCTTGCGGAGAAGTATCCTTCTGAGAAC 597
Query 602 TTGCTCTTAGTCACCCAC-GGGGAAGGAGTT 631
|||||||||||||| || ||||| | ||||
Sbjct 598 TTGCTCTTAGTCACTCATTGGGGA-GCAGTT 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46416351828
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5