BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486519
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60460.1 | Symbols: DUO1 | myb-like HTH transcriptional regu... 1358 0.0
> AT3G60460.1 | Symbols: DUO1 | myb-like HTH transcriptional regulator
family protein | chr3:22342429-22343491 REVERSE LENGTH=894
Length=894
Score = 1358 bits (735), Expect = 0.0
Identities = 849/903 (94%), Gaps = 11/903 (1%)
Strand=Plus/Plus
Query 11 TGGAAACGAAGAAGGAAGAGATAAAGAAAGGGCCATGGAAAGCCGAAGAAGACGAAGTAT 70
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2 TGGAAGCGAAGAAGGAAGAGATAAAGAAAGGTCCATGGAAAGCCGAAGAAGACGAAGTAC 61
Query 71 TAATCAACCATGTTAAGAGATACGGTCCTCGTGACTGGAGCTCCATTCGATCCAAAGGTC 130
| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 62 TCATCAACCATGTCAAGAGATACGGTCCTCGTGATTGGAGCTCCATTCGATCCAAAGGTC 121
Query 131 TTCTTCAACGCACTGGCAAATCTTGTCGTCTCCGTTGGGTCAATAAACTCCGTCCCAATC 190
||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 122 TTCTTCAACGCACCGGCAAATCCTGTCGTCTTCGTTGGGTCAATAAACTCCGTCCCAATC 181
Query 191 TCAAAAATGGATGCAAGTTCTCGGCTGACGAAGAGAGGACTGTGATTGAGTTACAATCTG 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TCAAAAATGGATGCAAGTTCTCGGCTGACGAAGAGAGGACTGTGATTGAGTTACAATCTG 241
Query 251 AATTTGGTAACAAATGGGCGAGAATCGCTACGTATTTACCGGGAAGAACTGATAACGATG 310
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 242 AGTTTGGTAACAAATGGGCGAGAATCGCTACGTATCTACCGGGAAGAACTGATAACGATG 301
Query 311 TGAAGAACTTT-TGGAGTAGCAGACAAAAGAGACTCGCTAGGATTCTTCATAACTCCTCT 369
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TGAAGAA-TTTCTGGAGTAGCAGACAAAAGAGACTCGCTAGGATTCTTCATAACTCCTCT 360
Query 370 GATGCATCGAGTTCGAGTTTCAATCCCAAATCTTCTTCTTCTCATCGAGTCAAGGGTAAA 429
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 361 GATGCATCGAGTTCGAGTTTCAATCCCAAATCTTCTTCTTCTCATCGACTCAAGGGCAAA 420
Query 430 AACGTCAAACCAATCCGTCAATCCTTCAACCCCTCTCAGGGCTTTGGTTTGGTTGAGGAA 489
||||||||||||||||||||||||| | || |||| ||||||||||||||||||
Sbjct 421 AACGTCAAACCAATCCGTCAATCCT-C------TC--AGGGTTTTGGTTTGGTTGAGGAA 471
Query 490 GAGGTTACAGTTGCTTCTTCGTGTTCCCAGATGGTTCCTAATTCATCTGATCAATTTGAT 549
|||||||||||| ||||||| |||||||||||||||||| |||||||||||||| ||| |
Sbjct 472 GAGGTTACAGTTTCTTCTTCATGTTCCCAGATGGTTCCTTATTCATCTGATCAAGTTGGT 531
Query 550 GATGAAACCTTGAGGTTGCCGGATATGGGTGTTAAGTTAGAGCATCAGCCTTTCGCTTTT 609
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 532 GATGAAGTCTTGAGGTTGCCGGATTTGGGTGTTAAGTTAGAGCATCAGCCTTTCGCTTTT 591
Query 610 GGCACTGATCTTGTTCTAACAGAGTTCTCTGACTCACCGAATGATGCAAATCAGCAAGGA 669
|||||||||||||| ||| |||||| ||||||||||| |||||||||||||||||||| |
Sbjct 592 GGCACTGATCTTGTCCTAGCAGAGTACTCTGACTCACAGAATGATGCAAATCAGCAAGCA 651
Query 670 ATTATCCCTTTCTCTCCAGAAAGCAGAGAGCTTTTGGCTAGACTCGACGACCCTTTTTAC 729
|| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 652 ATCAGCCCTTTCTCTCCAGAAAGCAGAGAGCTTTTGGCTAGACTTGACGACCCTTTTTAC 711
Query 730 TATGACATACTTGGACCAGCTGATTCTTCTGAGCCATTGTTCGCTCTTCCTCAGCCGTTT 789
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 712 TATGATATACTTGGACCAGCTGATTCTTCTGAGCCATTGTTCGCTCTCCCTCAGCCGTTC 771
Query 790 TTCGAGCCATCGCCAGCGCCAAGAAGATGCAGACATGTTTCAAAGGATGAAGAACCTGAT 849
|||||||| ||||| | ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 772 TTCGAGCCTTCGCCTGTGCCGAGAAGATGCAGACATGTTTCAAAGGATGAAGAAGCTGAT 831
Query 850 GTATTCTTAGATGATTTCCCGGCTGACATGTTTGATCAAGTTGATCCAATCCGAAGTCCT 909
|| |||||||| |||||||| ||||||||||||||||| ||||||||||||| |||||||
Sbjct 832 GTTTTCTTAGACGATTTCCCAGCTGACATGTTTGATCAGGTTGATCCAATCCCAAGTCCT 891
Query 910 TAG 912
|||
Sbjct 892 TAG 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44557688389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5