BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486519 Length=912 Score E Sequences producing significant alignments: (Bits) Value AT3G60460.1 | Symbols: DUO1 | myb-like HTH transcriptional regu... 1358 0.0 > AT3G60460.1 | Symbols: DUO1 | myb-like HTH transcriptional regulator family protein | chr3:22342429-22343491 REVERSE LENGTH=894 Length=894 Score = 1358 bits (735), Expect = 0.0 Identities = 849/903 (94%), Gaps = 11/903 (1%) Strand=Plus/Plus Query 11 TGGAAACGAAGAAGGAAGAGATAAAGAAAGGGCCATGGAAAGCCGAAGAAGACGAAGTAT 70 ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2 TGGAAGCGAAGAAGGAAGAGATAAAGAAAGGTCCATGGAAAGCCGAAGAAGACGAAGTAC 61 Query 71 TAATCAACCATGTTAAGAGATACGGTCCTCGTGACTGGAGCTCCATTCGATCCAAAGGTC 130 | ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 62 TCATCAACCATGTCAAGAGATACGGTCCTCGTGATTGGAGCTCCATTCGATCCAAAGGTC 121 Query 131 TTCTTCAACGCACTGGCAAATCTTGTCGTCTCCGTTGGGTCAATAAACTCCGTCCCAATC 190 ||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 122 TTCTTCAACGCACCGGCAAATCCTGTCGTCTTCGTTGGGTCAATAAACTCCGTCCCAATC 181 Query 191 TCAAAAATGGATGCAAGTTCTCGGCTGACGAAGAGAGGACTGTGATTGAGTTACAATCTG 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 TCAAAAATGGATGCAAGTTCTCGGCTGACGAAGAGAGGACTGTGATTGAGTTACAATCTG 241 Query 251 AATTTGGTAACAAATGGGCGAGAATCGCTACGTATTTACCGGGAAGAACTGATAACGATG 310 | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 242 AGTTTGGTAACAAATGGGCGAGAATCGCTACGTATCTACCGGGAAGAACTGATAACGATG 301 Query 311 TGAAGAACTTT-TGGAGTAGCAGACAAAAGAGACTCGCTAGGATTCTTCATAACTCCTCT 369 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 TGAAGAA-TTTCTGGAGTAGCAGACAAAAGAGACTCGCTAGGATTCTTCATAACTCCTCT 360 Query 370 GATGCATCGAGTTCGAGTTTCAATCCCAAATCTTCTTCTTCTCATCGAGTCAAGGGTAAA 429 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 361 GATGCATCGAGTTCGAGTTTCAATCCCAAATCTTCTTCTTCTCATCGACTCAAGGGCAAA 420 Query 430 AACGTCAAACCAATCCGTCAATCCTTCAACCCCTCTCAGGGCTTTGGTTTGGTTGAGGAA 489 ||||||||||||||||||||||||| | || |||| |||||||||||||||||| Sbjct 421 AACGTCAAACCAATCCGTCAATCCT-C------TC--AGGGTTTTGGTTTGGTTGAGGAA 471 Query 490 GAGGTTACAGTTGCTTCTTCGTGTTCCCAGATGGTTCCTAATTCATCTGATCAATTTGAT 549 |||||||||||| ||||||| |||||||||||||||||| |||||||||||||| ||| | Sbjct 472 GAGGTTACAGTTTCTTCTTCATGTTCCCAGATGGTTCCTTATTCATCTGATCAAGTTGGT 531 Query 550 GATGAAACCTTGAGGTTGCCGGATATGGGTGTTAAGTTAGAGCATCAGCCTTTCGCTTTT 609 |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 532 GATGAAGTCTTGAGGTTGCCGGATTTGGGTGTTAAGTTAGAGCATCAGCCTTTCGCTTTT 591 Query 610 GGCACTGATCTTGTTCTAACAGAGTTCTCTGACTCACCGAATGATGCAAATCAGCAAGGA 669 |||||||||||||| ||| |||||| ||||||||||| |||||||||||||||||||| | Sbjct 592 GGCACTGATCTTGTCCTAGCAGAGTACTCTGACTCACAGAATGATGCAAATCAGCAAGCA 651 Query 670 ATTATCCCTTTCTCTCCAGAAAGCAGAGAGCTTTTGGCTAGACTCGACGACCCTTTTTAC 729 || | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 652 ATCAGCCCTTTCTCTCCAGAAAGCAGAGAGCTTTTGGCTAGACTTGACGACCCTTTTTAC 711 Query 730 TATGACATACTTGGACCAGCTGATTCTTCTGAGCCATTGTTCGCTCTTCCTCAGCCGTTT 789 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 712 TATGATATACTTGGACCAGCTGATTCTTCTGAGCCATTGTTCGCTCTCCCTCAGCCGTTC 771 Query 790 TTCGAGCCATCGCCAGCGCCAAGAAGATGCAGACATGTTTCAAAGGATGAAGAACCTGAT 849 |||||||| ||||| | ||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 772 TTCGAGCCTTCGCCTGTGCCGAGAAGATGCAGACATGTTTCAAAGGATGAAGAAGCTGAT 831 Query 850 GTATTCTTAGATGATTTCCCGGCTGACATGTTTGATCAAGTTGATCCAATCCGAAGTCCT 909 || |||||||| |||||||| ||||||||||||||||| ||||||||||||| ||||||| Sbjct 832 GTTTTCTTAGACGATTTCCCAGCTGACATGTTTGATCAGGTTGATCCAATCCCAAGTCCT 891 Query 910 TAG 912 ||| Sbjct 892 TAG 894 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44557688389 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5