BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486521
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60490.1 | Symbols: | Integrase-type DNA-binding superfamil... 1098 0.0
AT2G44940.1 | Symbols: | Integrase-type DNA-binding superfamil... 235 5e-61
> AT3G60490.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr3:22349527-22350371 FORWARD LENGTH=845
Length=845
Score = 1098 bits (594), Expect = 0.0
Identities = 751/821 (91%), Gaps = 34/821 (4%)
Strand=Plus/Plus
Query 1 ATGGGAAAACAAATCAACATAGAGAGTAGTGCTACTCATCATCAAGACAATAATGTTTCC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGGAAAACAAATCAACATAGAGAGTAGTGCTACTCATCATCAAGACAATATTGTTTCC 60
Query 61 GTTATAACAGCCTCGACCGTCGCCGCCACGATTTCCTCCTCCGTGGTAACGTCTTCGTCA 120
|||||||||||| ||| | | | ||||||||||| |||||||||||||||
Sbjct 61 GTTATAACAGCCACGA---T----ATC-C----TCCTCCTCCGTCGTAACGTCTTCGTCA 108
Query 121 GAGTCTTGGTCTACATCCAAAAGGTCGTTAGTGCAAGACAATGGCGT-CGGAGGAAAACG 179
|| ||||||||||| |||||||| ||||||||||||||||||| | | |||||| |||||
Sbjct 109 GACTCTTGGTCTACCTCCAAAAGATCGTTAGTGCAAGACAATGAC-TCCGGAGGGAAACG 167
Query 180 GCGGAAGATCAGCAACGTCAGCGATGATAATAAGAATCCGACGTCGTATAGAGGAGTGAG 239
||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 168 GCGGAAG---AGCAACGTTAGTGATGATAACAAGAATCCGACGTCGTATAGAGGAGTGAG 224
Query 240 GATGAGGAGTTGGGGGAAATGGGTGTCGGAGATTAGAGAGCCGAGGAAGAAGTCAAGAAT 299
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 225 GATGAGGAGTTGGGGAAAATGGGTGTCGGAGATTAGAGAGCCGAGGAAGAAATCAAGAAT 284
Query 300 ATGGCTTGGCACTTATCCAACGGCTGAGATGGCAGCTCGTGCTCATGATGTGGCGGCTTT 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 285 ATGGCTTGGCACTTATCCAACGGCAGAGATGGCAGCTCGTGCTCATGATGTGGCGGCTTT 344
Query 360 AGCTATTAAAGGCAACTCCGGTTATCTCAATTTCCCTGACTTATCCGGTTTGCTTCCTCG 419
||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||
Sbjct 345 AGCTATTAAAGGCAACTCCGGTTTTCTTAATTTCCCTGAATTATCCGGTTTGCTTCCTCG 404
Query 420 TCCGGTTAGCTGCTCTCCTAAGGATATACAAGCTGCAGCTACCAAAGCCGCCGAAGCAAC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 TCCGGTTAGCTGCTCTCCTAAGGATATACAAGCTGCAGCTACCAAAGCCGCCGAAGCAAC 464
Query 480 CACGTGGCAAAAACCGATTATCAATGAGAAATTAGCCGAACCGGAAGGTGATGAGCTAAG 539
||||||||| |||||| ||||| || |||||||||| ||||||||||||
Sbjct 465 CACGTGGCACAAACCGGTTATCGATAAGAAATTAGC------------TGATGAGCTAAG 512
Query 540 CCACTCTGAATTGTTGTCTACGGCTCAGTCTTCGACTTCGAGTAGTTTCGTGTTTTCTTC 599
||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 513 CCACTCTGAGTTGTTGTCTACCGCTCAGTCTTCGACTTCTAGTAGTTTCGTGTTTTCTTC 572
Query 600 GGACACGTCGGAGACTTCTAGTACGGACAAGGAAAGCAACGAAGAGAAGGTGTTTGATTT 659
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 573 GGACACGTCGGAGACTTCTAGTACGGACAAGGAAAGCAACGAAGAGACGGTGTTTGATTT 632
Query 660 GCCGGACCTTTTCACGGACGGGCTGATGAACCAAAACGACGCGTTTTGCTTATGCAACGA 719
|||||||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||
Sbjct 633 GCCGGACCTTTTCACGGACGGGCTTATGAACCCAAACGATGCGTTTTGTTTATGCAACGG 692
Query 720 CACTTTTACGTGGCAGCTTTACGGAGAGGA---TGT-GGGATTAAGGTTTGAAGAGCCGT 775
||| |||||||||||||||||||||||||| ||| ||| || ||||||||||||||||
Sbjct 693 CACCTTTACGTGGCAGCTTTACGGAGAGGAGGATGTAGGG-TTCAGGTTTGAAGAGCCGT 751
Query 776 TTAACTGGCAAAATGACTAAACCACCCTCCACTTGCTTACT 816
|||| |||||||||||||||||| |||||||||||||||||
Sbjct 752 TTAATTGGCAAAATGACTAAACCGCCCTCCACTTGCTTACT 792
> AT2G44940.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr2:18537257-18538418 FORWARD LENGTH=1162
Length=1162
Score = 235 bits (127), Expect = 5e-61
Identities = 177/201 (88%), Gaps = 4/201 (2%)
Strand=Plus/Plus
Query 224 CGTATAGAGGAGTGAGGATGAGGAGTTGGGGGAAATGGGTGTCGGAGATTAGAGAGCCGA 283
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 333 CGTATAGAGGAGTGAGGATGAGGAGTTGGGGAAAATGGGTGTCGGAGATTAGAGAGCCGA 392
Query 284 GGAAGAAGTCAAGAATATGGCTTGGCACTTATCCAACGGCTGAGATGGCAGCTCGTGCTC 343
| ||||| |||||||| ||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 393 GAAAGAAATCAAGAATCTGGCTCGGGACTTATCCAACGGCTGAGATGGCAGCTCGAGCTC 452
Query 344 ATGATGTGGCGGCTTTAGCTATTAAAGGCAACTCCGG-TTATCTCAATTT-CCCTGACTT 401
|||| || ||||||||||| |||||||| | | ||| ||| |||||||| ||| | ||
Sbjct 453 ATGACGTAGCGGCTTTAGCCATTAAAGGTA-CAACGGCTTACCTCAATTTTCCCA-AGTT 510
Query 402 ATCCGGTTTGCTTCCTCGTCC 422
| |||| ||||||||||||
Sbjct 511 AGCCGGCGAGCTTCCTCGTCC 531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39735210277
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5