BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486522
Length=1640
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60500.1 | Symbols: CER7, G3 | 3'-5'-exoribonuclease family ... 2427 0.0
AT3G12990.1 | Symbols: RRP45a | ribonuclease PH45A | chr3:41561... 1203 0.0
> AT3G60500.1 | Symbols: CER7, G3 | 3'-5'-exoribonuclease family
protein | chr3:22353946-22356585 FORWARD LENGTH=1636
Length=1636
Score = 2427 bits (1314), Expect = 0.0
Identities = 1519/1613 (94%), Gaps = 33/1613 (2%)
Strand=Plus/Plus
Query 29 TTACATGTACTGTTGTTAAGGCCGAGAGATAGATaaaaaaaaaTATTTGTCCGATTTCGC 88
|||||| |||||||||||||||||||||||||||| ||||||| || ||| |||||| ||
Sbjct 4 TTACATTTACTGTTGTTAAGGCCGAGAGATAGATAGAAAAAAACATCTGTGCGATTTTGC 63
Query 89 CGCCGCTCCCTAAAATCTTTGGAGCTCCTTCTTATTTAGCCGGAGGT---G------AAA 139
|||| |||||||||||||||||||||||||| || |||||||||||| | |||
Sbjct 64 CGCCTCTCCCTAAAATCTTTGGAGCTCCTTCGTAGTTAGCCGGAGGTGAAGTACAATAAA 123
Query 140 AGAAGGAAGAAAGTCCAAGTGTCTCTTCTCATCTCTTTTCTCCAATAGTTACTAGTCATA 199
|||| |||||||||||||||||||||||||||||||||||| | | || |
Sbjct 124 AGAAAGAAGAAAGTCCAAGTGTCTCTTCTCATCTCTTTTCT-C--------C-AG---T- 169
Query 200 GCAGAATAATGGAGGGGAGATTGGCTAATATGTGGAGGTTGACTGTGAACGAGAGTAAAT 259
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 170 --AG-ATAATGGAGGGGAGATTGGCTAATATGTGGAGGTTGACTGTTAACGAAAGTAAAT 226
Query 260 TCGTGGAAACTGCGTTGCAATCTGAACTCAGAGTTGATGGTCGTGGCCTTTATGATTACC 319
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 227 TCGTGGAAACTGCGTTGCAATCTGAGCTCAGAGTAGATGGTCGTGGCCTTTATGATTATC 286
Query 320 GCAAGCTTACTATTAAGTTTGGCAAAGAATATGGTAGCTCGGAAGTTCAACTTGGTCAGA 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 GCAAGCTTACTATTAAGTTTGGCAAAGAATATGGTAGCTCGGAAGTTCAACTTGGTCAGA 346
Query 380 CTCATGTAATGGGTTTTGTGACTGCTCAGATGGTACAACCTTACAAAGACAGACCTAATG 439
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 347 CTCATGTAATGGGTTTCGTGACTGCTCAGTTGGTACAACCTTACAAAGACAGACCTAATG 406
Query 440 AAGGTTCTCTATCTATCTTCACGGAATTTTCTCCAATGGCTGATCCGTCTTTTGAGCCTG 499
|||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 AAGGGTCTCTCTCGATCTTCACGGAATTTTCTCCAATGGCTGATCCGTCTTTTGAGCCTG 466
Query 500 GTCGTCCTGGCGAATCTGCTGTGGAGTTGGGACGCATTATCGACCGTGGTCTAAGAGAAA 559
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 467 GTCGTCCTGGCGAATCTGCAGTGGAGTTGGGACGCATTATCGATCGTGGTCTAAGAGAAA 526
Query 560 GCCGTGCGGTAGATACAGAGTCACTCTGCGTTCTAGCTGGAAAGATGGTTTGGTCTGTTC 619
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 GCCGTGCAGTAGATACAGAGTCACTCTGCGTTCTAGCTGGAAAGATGGTTTGGTCTGTTC 586
Query 620 GTATTGATCTTCATGTCTTGGACAACGGAGGGAACTTGGTTGATGCTGCAAATATTGCTG 679
| ||||| |||||| |||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 587 GCATTGACCTTCATATCTTGGACAATGGAGGGAACTTAGTTGATGCTGCAAATATTGCTG 646
Query 680 CTTTAGCAGCTCTCATGACGTTTAGGAGACCCGACTGCACTGTAGGAGGAGAGAACGGTC 739
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 647 CTTTAGCAGCTCTCATGACATTTAGGAGACCCGACTGCACTGTAGGAGGAGAGAATGGTC 706
Query 740 AAGAAGTGATCATACATCCACCAGAGGAAAGGGAACCACTTCCATTGATAATACATCATC 799
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 707 AAGAAGTGATCATACATCCACTAGAGGAAAGGGAACCACTTCCATTGATAATACATCATC 766
Query 800 TCCCAATAGCCTTCACGTTTGGATTTTTTAATAAAGGCAACATTGTGGTGATGGACCCAA 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 TCCCAATAGCCTTCACGTTTGGATTTTTTAATAAAGGCAACATTGTGGTGATGGACCCAA 826
Query 860 CTTATGTTGAAGAAGCAGTTATGTGTGGGAGAATGACTGTGACAGTTAATGCCAATGGCG 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 CTTATGTTGAAGAAGCAGTTATGTGTGGGAGAATGACTGTGACAGTTAATGCCAATGGCG 886
Query 920 ATATATGTGCAATCCAAAAACCGGGGGAAGAAGGCGTGAACCAGAGTGTAATTCTTCATT 979
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 887 ATATATGCGCAATCCAAAAACCGGGGGAAGAAGGCGTGAACCAGAGTGTAATCCTTCATT 946
Query 980 GCCTGCGTCTTGCTTCTTCACGAGCTGCTGCAACAACAAAGATCATTAGAGAAGAAGTTG 1039
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 947 GCCTGCGTCTTGCTTCTTCAAGAGCTGCTGCAACAACAAAGATCATTAGAGAAGAAGTTG 1006
Query 1040 AAGCATATAACCGTGAGAGAAGCTTACAGAAGGTGAAGCGACATCCCACTTTGGCTAAAT 1099
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 AAGCATATAACTGTGAGAGAAGCTTACAGAAGGTGAAGCGACATCCCACTTTGGCTAAAT 1066
Query 1100 CTGAAGTTTCTGGACCTACTGTAGCTGTGAAGGAGGAATATAGGAAGTCCTCAGATCAGG 1159
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1067 CTGAAGTTTCTGGACCTACTGTAGCTGTGAAGGAGGAACATAGGAAGTCCTCAGATCAGG 1126
Query 1160 AAAAATCTGCAGAGATATCTCGGGAACATGTTGAAAGACTAAAGCTCTCTCCAGAGGAAC 1219
||| | |||||||||||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct 1127 AAAGAGCTGCAGAGATATCTCGAGAACATGTTGAAAGACTAAAGCTCTCTACGGAGGAAG 1186
Query 1220 TAAGAAGCAGTAAGGAACAAGAAGCTGCCAATTTTAAAGGCGGTCCCTCAAATTGGGACC 1279
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1187 TAAGAAGCAGTAAGGAAGAAGAAGCTGCCAATTTCAAAGGCGGTCCCTCAAATTGGGACC 1246
Query 1280 CTTACTCAGAAGCTATGGATGTTGATTCACTGAAAGTTTCTCTTGCTTCAAAAGCGGATT 1339
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1247 CTTACTCAGAAGCTATGGATGTTGATTCACTGAAAGTTTCTCTTGCTTCAAGAGGGGATC 1306
Query 1340 CCATTACTAAGTCATCGAGCAAGAAGAAAATGAATGGCTCTGGAAATGCGCAGAAGGATG 1399
|| |||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||
Sbjct 1307 CCGTTACTAAGTCATCGAGCACGAAGAAAATGAACGGCTCTGGAAATGCGCAGAAGGTTG 1366
Query 1400 ACGGTGAGATTTCAGCTGAGGAAGTAACCGGAGATTTAGGGAAGAAGGATACAAAACACA 1459
| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1367 GTGTTGAGATTTCAGTTGAGGAAGTAACCGGAGAATTAGGGAAGAAGGATACAAAACACA 1426
Query 1460 AGGATGGAGAGATGACACTTAAAGATGCTGTCAAACCTAAAAAGAAGCGGAAAAACAAAA 1519
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 AGGATGGAGAAATGACACTTAAAGATGCTGTCAAACCTAAAAAGAAGCGGAAAAACAAAA 1486
Query 1520 GCTGAGTTAATGCATTTTCCCGATCACTCTTTTACTTT-CTTCTTCCCTTGAAACTCAAG 1578
|||||||||| |||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct 1487 GCTGAGTTAAAGCATTTTCCCGATCACTCGT--ACTTTTCTTCTTCCCTTGAAACTCAAG 1544
Query 1579 ACTAGAGACGGTTT-TAGGTCAATTGTATCTGAAAA--GTCAAGAGTTTTGTT 1628
|||| ||||||||| | ||||||||||||||||||| ||||| |||||||||
Sbjct 1545 ACTATAGACGGTTTAT-GGTCAATTGTATCTGAAAAAAGTCAAAAGTTTTGTT 1596
> AT3G12990.1 | Symbols: RRP45a | ribonuclease PH45A | chr3:4156198-4157964
FORWARD LENGTH=1193
Length=1193
Score = 1203 bits (651), Expect = 0.0
Identities = 852/949 (90%), Gaps = 13/949 (1%)
Strand=Plus/Plus
Query 192 TAG-TCA-TAGCAGAATAATGGAGGGGAGATTGGCTAATATGTGGAGGTTGACTGTGAAC 249
||| ||| ||||| || |||||||||||| ||| ||||||||||||||||||||||||
Sbjct 131 TAGCTCACTAGCA-AACAATGGAGGGGAGGTTGAATAATATGTGGAGGTTGACTGTGAAT 189
Query 250 GAGAGTAAATTCGTGGAAACTGCGTTGCAATCTGAACTCAGAGTTGATGGTCGTGGCCTT 309
||||| |||||||| ||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 190 GAGAGCAAATTCGTTGAATCTGCGTTGCAATCTGAGCTCAGAGTCGATGGTCGTGGCCTT 249
Query 310 TATGATTACCGCAAGCTTACTATTAAGTTTGGCAAAGAATATGGTAGCTCGGAAGTTCAA 369
||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 250 TATGATTACCGCAAGCTTACTATTAAGTTTGGCAAGGAATATGGCAGCTCACAAGTTCAA 309
Query 370 CTTGGTCAGACTCATGTAATGGGTTTTGTGACTGCTCAGATGGTACAACCTTACAAAGAC 429
|| ||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||
Sbjct 310 CTGGGTCAGACTCATGTAATGGCTTTTGTGACTGCTCAGCTAGTACAACCTTACAAAGAC 369
Query 430 AGACCTAATGAAGG-TTCTCTATCTATCTTCACGGAATTTTCTCCAATGGCTGATCCGTC 488
||||||| |||||| | || | ||||||||||| || |||||||||||||||||||| ||
Sbjct 370 AGACCTAGTGAAGGCTCCT-TCTCTATCTTCACCGAGTTTTCTCCAATGGCTGATCCATC 428
Query 489 TTTTGAGCCTGGTCGTCCTGGCGAATCTGCTGTGGAG-TTGGGACGCATTATCGACCGTG 547
|||||||| || | |||||| ||||||||||| ||| || || || ||||| |||||||
Sbjct 429 GTTTGAGCCAGGGCATCCTGGTGAATCTGCTGTTGAGCTT-GGCCGTATTATAGACCGTG 487
Query 548 GTCTAAGAGAAAGCCGTGCGGTAGATACAGAGTCACTCTGCGTTCTAGCTGGAAAGATGG 607
|||| ||||||||||||| |||||||||||||| || || |||||||| |||||| |||
Sbjct 488 CTCTACGAGAAAGCCGTGCAGTAGATACAGAGTCGCTTTGTGTTCTAGCCGGAAAGCTGG 547
Query 608 TTTGGTCTGTTCGTATTGATCTTCATGTCTTGGACAACGGAGGGAACTTGGTTGATGCTG 667
||||||||||||| ||||||||||| | |||||||| ||||||||||||||||||||||
Sbjct 548 TTTGGTCTGTTCGCATTGATCTTCACATTTTGGACAATGGAGGGAACTTGGTTGATGCTG 607
Query 668 CAAATATTGCTGCTTTAGCAGCTCTCATGACGTTT-AGGAGACCCGACTGCACTGTAGGA 726
| ||| ||||||| ||||| || |||||||| ||| |||||||| || ||||||||||||
Sbjct 608 CTAATGTTGCTGCCTTAGCCGCACTCATGAC-TTTCAGGAGACCTGATTGCACTGTAGGA 666
Query 727 GGAGAGAACGGTCAAGAAGTGATCATACATCCACCAGAGGAAAGGGAACCACTTCCATTG 786
|| || ||| ||||||| ||||||||||||||||| || ||||||||||||||||| |||
Sbjct 667 GGGGACAACAGTCAAGACGTGATCATACATCCACCCGAAGAAAGGGAACCACTTCCTTTG 726
Query 787 ATAATACATCATCTCCCAATAGCCTTCACGTTTGGATTTTTTAATAAAGGCAACAT-TGT 845
|||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 727 ATAATACATCATCTCCCAATAGCCTTCACGTTTGGATTTTTTAATAAAGGCAGTATCT-T 785
Query 846 GGTGATGGACCCAACTTATGTTGAAGAAGCAGTTATGTGTGGGAGAATGACTGTGACAGT 905
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 786 GGTGATGGACCCAACTTACGTTGAAGAAGCTGTTATGTGTGGGAGAATGACTGTGACAGT 845
Query 906 TAATGCCAATGGCGATATATGTGCAATCCAAAAACCGGGGGAAGAAGGCGTGAACCAGAG 965
|||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 846 CAATGCCAATGGCGATATATGCGCAATCCAAAAACCAGGAGAAGAAGGCGTGAACCAGAG 905
Query 966 TGTAATTCTTCATTGCCTGCGTCTTGCTTCTTCACGAGCTGCTGCAACAACAAAGATCAT 1025
|||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| ||
Sbjct 906 TGTAATCCTTCATTGCCTGCGTCTTGCTTCTTCAAGAGCTTCTGCAACAACAAAGATAAT 965
Query 1026 TAGAGAAGAAGTTGAAGCATATAACCGTGAGAGAAGCTTACAGAAGGTGAAGCGACATCC 1085
|||||| | |||||||||||| ||||||||||| |||| ||||||||||||||| ||||
Sbjct 966 TAGAGATGCAGTTGAAGCATACAACCGTGAGAGGAGCTCACAGAAGGTGAAGCGGCATCA 1025
Query 1086 CACTTTGGCTAAATCTGAAGTTTCTGG-ACCTACTGTAGCTGTGAAGGA 1133
||||||||||| |||||||||| ||| ||||| ||||| |||| ||||
Sbjct 1026 TACTTTGGCTAAGTCTGAAGTTT-TGGGACCTATTGTAGTTGTGTAGGA 1073
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81023679630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5